LOC113540234 (csrp1a,LOC100304834,LOC107697020,LOC107559179,LOC108425502,LOC107673143,LOC107707378)


Basic Information

Item Value
gene id LOC113540234
gene name csrp1a,LOC100304834,LOC107697020,LOC107559179,LOC108425502,LOC107673143,LOC107707378
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28611191 ~ 28619112 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936574.2
aaaCTTTGAGTAGAAGGAAGTGAGCTCCAACAGGCCAGAGCAGCTTCTCCACCGAtcctctggctctctctctctctctctctctctctctctcacacacacacacacacacacatctcacacttCTGTTTTGACCTTGTTCTGCCTGACCTACTCGAGCACTACAGgatGCCTCTTGGGGGTGGAAACAAGTGTGGCTGCTGTCAGAAGACTGTGTACTTTGCAGAGGAAGTTCAGTGCGATGGACGGAGTTTCCATAAATCATGCTTCCTGTGTATGGTGTGCCGGAAGAACCTAGATAGCACTACTCTGGCCACCCATGAAAATGAGGTCTACTGCAAGTCCTGCTACGGCAAGAAATACGGACCAAAAGGCTATGGGTACGGTGCGGGTGCTGGGACGCTGAGCATGGACAAAGGAGAGTCTCTGGGAATCAAACATAAAGATGATCAGCCGCACCAGCCCACCAGCAACCCGAACACGTCCAAGTTCGCCCAGAGGTTCGGGGGTTCTGATGTGTGCCCTCGCTGCGGCAAAGCTGTGTACGCAGCCGAGAAGACCATCGGAGCAGGGGCGTCGTGGCATAGGAGCTGTTTCCGCTGTGCTAAATGTGGGAAGGGCCTCGAATCCACTACCATGACGGACAAAGATGGCGAGATCTACTGCAAAGGTTGCTATGCTAAAAGCTTTGGTCCAAAAGGGTTCGGGTATGGCCAAGGAGCCGGTGCTCTCGCTCATGCTCAGTAGAGCGACGCGACCAAAACGTTTCTATTCCATACACCTTATTTCACCTCGCTTGGAGAAAAATCACTCGACAAGCTGAAGCTCTTCACTGCATGCGCTAATATTTACAGTCactaaagttagctagctatctttTGCTTGCTATTAAATAAGCTAGCTAGGATTACAAAGTGCTGTCATTGGAGTGTGTTAACGAAACGTAAATTgcttactagctagctaacagtatCATCAGCAATGGTATTAAATATAGCTAGTTGcctatattattaaaaataaatagctagctTGGGTAGTCATAGCTATGCCACTTGGCGTGAAAAACAGCCGCCATGTTGCGTCAGAGGTTTGGTAAAGAGGTGTTCATGGTGGAAAGGAAGAAGGAGACGGAAACACAGATGGAAATAGAATCATTTCACCTGCAAATTATCGACTCATGTCCAAATAGGGCTTTGGGTATTTGGGTATTAATACTTTTCaataaagtagaaaaaaaaaaaaaaa

Function

symbol description
csrp1a Predicted to enable actinin binding activity. Predicted to be a structural constituent of muscle. Acts upstream of or within several processes, including JNK cascade; gastrulation; and neuron projection regeneration. Predicted to be active in Z disc and nucleus. Is expressed in several structures, including axial hypoblast; axis; brainstem; cardiovascular system; and mesoderm. Orthologous to human CSRP1 (cysteine and glycine rich protein 1).

NR:

description
PREDICTED: cysteine and glycine-rich protein 1

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0007254 JNK cascade biological_process
GO:0003007 heart morphogenesis biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K09377 CSRP; cysteine and glycine-rich protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936574.2 True 1248 mRNA 0.47 6 28611191 28619112

Neighbor

gene id symbol gene type direction distance location
lmbr1 lmbr1 coding downstream 5948 28574908 ~ 28605243 (-)
shha shh coding downstream 119344 28476431 ~ 28491847 (-)
ro60 trove2 coding downstream 324533 28276696 ~ 28286658 (-)
cdc73 cdc73 coding downstream 335876 28238896 ~ 28275315 (-)
LOC113540124 NA coding downstream 415134 28173321 ~ 28196057 (-)
LOC113540232 LOC108267757,LOC108430781,LOC107591375,LOC107668940 coding upstream 704 28619816 ~ 28628143 (-)
dcaf8 dcaf8 coding upstream 13642 28632754 ~ 28642395 (-)
scp2a scp2,scp2a coding upstream 49867 28668979 ~ 28680704 (-)
czib c7h1orf123,cunh1orf123,si:ch211-284b7.3,LOC103022465,LOC107681739,LOC107719286,LOC107671679,LOC107722617 coding upstream 63360 28682472 ~ 28685576 (-)
uck2b uck2b,uck2,LOC108267616,LOC108430692,LOC104935075,LOC103363741 coding upstream 67444 28686556 ~ 28690012 (-)
G72726 NA non-coding downstream 139420 28397661 ~ 28471771 (-)
G72709 NA non-coding downstream 227731 28343134 ~ 28383460 (-)
G72720 NA non-coding downstream 232059 28365657 ~ 28379132 (-)
G72658 pfn2,pfn2l non-coding downstream 466325 28081544 ~ 28144866 (-)
G72796 NA non-coding upstream 48211 28667323 ~ 28668643 (-)
LOC117597077 NA non-coding upstream 93922 28713034 ~ 28717955 (-)
G72824 otol1a,LOC108267659,LOC103045957,LOC108430690,LOC107701323,LOC107560771,LOC107593893,LOC107722646,LOC105899147 non-coding upstream 163811 28782923 ~ 28784140 (-)
G72893 NA non-coding upstream 213272 28832384 ~ 28833720 (-)
LOC117597038 NA non-coding upstream 272904 28892016 ~ 28896799 (-)
trnas-uga_2 NA other downstream 374386 28236724 ~ 28236805 (-)
trnas-uga_1 NA other downstream 374924 28236186 ~ 28236267 (-)
LOC117597043 NA other downstream 385588 28197991 ~ 28225603 (-)
prkag2b LOC108267467,LOC108430764,LOC108434244 other downstream 569406 28016064 ~ 28041785 (-)
pcyt1aa pcyt1a,LOC108267677,LOC108430756,LOC103040438,LOC107709348,LOC107671662,LOC107559373 other downstream 1055204 27547752 ~ 27555987 (-)
LOC113540437 fam159a other upstream 29212 28648324 ~ 28652425 (-)
LOC117597168 NA other upstream 168502 28787614 ~ 28791829 (-)
LOC117597037 dnajb4,LOC107566472,LOC107681825,LOC107599850,LOC107690981,LOC107751861,LOC108430719 other upstream 254466 28873578 ~ 28884965 (-)
usp33 usp33,LOC106569751,LOC107708728,LOC107751869 other upstream 529526 29148638 ~ 29171921 (-)
LOC113540665 LOC108267691,LOC108437516,LOC107715522,LOC107681815,LOC105889505 other upstream 945109 29564221 ~ 29575727 (-)

Expression


Co-expression Network