LOC113540236 (LOC108267484)


Basic Information

Item Value
gene id LOC113540236
gene name LOC108267484
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 27237944 ~ 27261901 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936576.2
ACCCACGTCCATCCTCCCTGTTCTCAGCTCTCAACACAATAATACTGCTTTATGTTTTCAAAGAATTTCACATTGAGGAGCTTTTACATCCCACTGACTCAGATTGTTCTGCGTCTGTGAAGGTGCGGgggaaagaaaatgacaaactggAGCTAGACTGGAACATACCATCAGGGGAGCAGGGGAAGCTCATTCCAAACCTGTAGGAAGACAGGTTAAACAAGGTATGAAAATTCCACCAAGCTGAAAAAACAGTTGAGGCCCACAAACAATGGACACAAAGAAAGTGAATGGTGTTGCCCCAAAAGAAAACGGAAGTCATAGAAAACCACCCTCCTATTCTGTCGAAACCCCCTATGGATTTCACTTGGACCtggattttgttaaatatgTCGAGGACATCGAAAAGGGCAACACAATCAGAAGGGTGCAACTTCAGCGTAGACCGCGTGGGCGGAGCAGTGGAAACCTGTCGCGTAACCTCAGTTTACCTGGGTACAGTTGCAGATCCTCTCAGTGGAACTCAATGACCATCTCATTTCCCAGAACTCGACTTGCAGACTCCCAGCAGCCGTGTGATTTTCAGTGCAGCAGCGATGGTGAGTCAGCTGGTTTCAGCAGGCAATCAGAGTCTTCCTACAAAACCTCAAAGGCGTTTGATGAGCAGCCGTTGGGACCACATGTGAGGCCAAATCTACTGCGGGCCTCGAGTTTACCCTTAacagtgttactgagaaaatacTCCACTGAGGACCCGACCAGCCCCAATGGTTCGAGGGATTTTCTCTCTCAAGAAAACGGTTCTTCTGAGGACGTCTTCCACAGCCCAGGAGGCGTGAGCGGGACTTTTCAGCAGCTGACTGCAGCTCTCCAGAGAGTTGGTGAGCTTGAAGAGGAGATCAGGATCATACCAGAACTTAAAGCACAGATATGTATCTTACAGGAGGAGCGAGAGAGGCTCCTGCACACATTCCAATCCGAACCTgacaacactgtgactctggACTTTCCTAGAGGTGTGGTGAAgatggtggagaaaaaaaataaagcaaacaatGACTGGATGGATCGGGAGTATGATCAGCTGGAAGAGAATGTCAAGGCTTCCTCTGAGCAAGTTGAGGCAATTGTAATAACCACAGAAAAAAACTCACTAGCAACTAAGAGAGATCATGAAGTCGTTGAGGAGTTGCAGAAGAAAATCACAATGCTAGAGCAGAAGCTTCACGATCTTGAGTTTGATCTGAAAAAAACGACAAATCTTCTtaaggaacaggaacaggagaGTCGTATCAAGGACAAGAGAATCAATGAGTTGACCAAACAACATGCAGAAAACATCTGGGTTAAACTAGACAACGTGAGGAACACACCAGACATAGAGAACAAGTTAGAACCATCTGTGCAAACATACTCACCTGACTCTGAATCAAGTAAAGCTAACCAGGTGTGTTTAATGGAAGAATTTAAACCCTGTGCAACAACAGGACCTGCGGGATCACAAGCAGACATGGAGCACCATGTGAAAAAAGTCAGAGAGCTCCTACAGGAGCAGTGGGAGTGTCTTTGCAGAAATGAGGATTCAGGAAAAGTGCTGTCCTCTGAACATCTACACCCACGAGTCTGCTCCATCCAAAGACAGCTGGTCTCTTTAGTCCACCTCCTTACACTCTATATATCACCTGCAGGAGATGCACCACCATCAGCTCAGGAGTCCATGATGGAGGACCAAATATATGTGGTGAAGACATGGGAAAGTCCTGAACAAGACTATGGAAGAGACCGATTTGTTCTGAGCAATTCTAGCAAAGTAGTGGAGGGCAGCACGAGGCCAAAGGATCCTGCTGAGGAGGGGTTTAACCAAAAAAATTCCCAAATTGAAGAGCTGCCAGGTTCTACACTGACCTCCAGAAAGCAAGAGCTCATCGGAGAAGCCACTGCAGAGACCACACACTTGAAAGTGGCTGAAGAACATCATGAAGATCAGGCAGTAGAAAAAGAGGACAAGCAGGATGGCACATGTTCAGGAGCTGGATCAGAAGAAGCATCACATGGTGAAGGAGGAAGGGGGGTGGAGACTGACTTCATGAATGCGTGTCACTTCTTAGAGAAACACATGGATGAAGTTTCTGAACCAAATGATGAAATGAGGCAGGCTTTGACTGTGGTGTTCCAGCAGTGGTTCCACGTGTGTGCTGAGGAGAACTCGTGTGCCGACACGGTCGCTCTGTACATTAATGAAGTGGCCACAGAAACCCCCGCAGTGCTGCAGTTCCTGGTCAATATGGTGGATGATAATGGAAACACAGCCCTGCATTACAGCGTGTCCCACTCAAACTTCAGCATTGTTAAACTCCTCTTGGACACGGgtgtgtgtgacgTGGATCTGAAGAATAAGACTGGGTACACAGCGGTCATGTTGGCGTCTCTCCAGCCGGTGGACACTGATACAGATATAAAGGTGGTCCAGCAGCTGATGGAGTTCGGTGATGTTAACGCTCGTGCAGGTCAGGTGGGTCAGACGGCGCTCCACCTGGCGGTCAGACACGGCCGAGCGTCCATGGTGAGACTCCTTCTGGCACATGGAGCAAACGTTAATGCTCAGGATCAAGCGGGAACCACAGCTCTGATCAGCGCCTGTGACCGTGGACACGCCGACATTGTCCGAATTCTGCTGCAGGACCCTGACTGCGATGTGAACCTTACAGATAAGGGAAGTCGCAGCGCTCTGTCCCTGGCCACACAGGCGTCACACACCGAGATCGCAGACCTGCTTAAAGCTCGGACCACCAACACTAAAGCCCATGACAAATGCAAGATGGCTTAGATACGAGAACCTGCTCGGTGGAGAGCTCCATGAACATGTAGAAACCTTTCTGCATGTTCATTCTGGAATATCTACAGTTTTCATTATGTTTCTGTCATAATTTGCTTCATTTGAATAATAAGGCCATTTTATgatcagttattattattattattattattattattattagtcttgcCTGAAAGATGGATGCGTGGATTCATTTATGATTTTGACTGAAAGATTGCGAAAAGGTAAATTATTTGTGCTGGAGTATTTCTGTGGAAGACTTTCTACAGTTTCGCCATATATCctgtaaaataatcatcattttgTTCTACCGGTCTCtttaaattacacattttattattcagcTCTGATTATGCACAGCTTGTCAAACTCAACTGTTGACTCATTTGTAATTCTAATTCTAATCATTGTGGTTAGCGACTGTCTCATATCAGCAAATTCACATGAAAATATCCtacaaacaagttagttcctgttctcacttacgttatagcagctataaacagtcattccctcaccagcctctctttatttctcttgctgat
>XM_026936577.2
ACCCACGTCCATCCTCCCTGTTCTCAGCTCTCAACACAATAATACTGCTTTATGTTTTCAAAGAATTTCACATTGAGGAGCTTTTACATCCCACTGACTCAGATTGTTCTGCGTCTGTGAAGGTGCGGgggaaagaaaatgacaaactggAGCTAGACTGGAACATACCATCAGGGGAGCAGGGGAAGCTCATTCCAAACCTGTAGGAAGACAGATATACACAAGACAGTATCTGCAGGAAAAATTAAAGCCCCCATGCCTGAGAGCTTTGTCTGCATTaacaatgaaaaagagaaaaattcaAGACTTCAATCAAAGCCTCCAAGGTTAAACAAGGTATGAAAATTCCACCAAGCTGAAAAAACAGTTGAGGCCCACAAACAATGGACACAAAGAAAGTGAATGGTGTTGCCCCAAAAGAAAACGGAAGTCATAGAAAACCACCCTCCTATTCTGTCGAAACCCCCTATGGATTTCACTTGGACCtggattttgttaaatatgTCGAGGACATCGAAAAGGGCAACACAATCAGAAGGGTGCAACTTCAGCGTAGACCGCGTGGGCGGAGCAGTGGAAACCTGTCGCGTAACCTCAGTTTACCTGGGTACAGTTGCAGATCCTCTCAGTGGAACTCAATGACCATCTCATTTCCCAGAACTCGACTTGCAGACTCCCAGCAGCCGTGTGATTTTCAGTGCAGCAGCGATGGTGAGTCAGCTGGTTTCAGCAGGCAATCAGAGTCTTCCTACAAAACCTCAAAGGCGTTTGATGAGCAGCCGTTGGGACCACATGTGAGGCCAAATCTACTGCGGGCCTCGAGTTTACCCTTAacagtgttactgagaaaatacTCCACTGAGGACCCGACCAGCCCCAATGGTTCGAGGGATTTTCTCTCTCAAGAAAACGGTTCTTCTGAGGACGTCTTCCACAGCCCAGGAGGCGTGAGCGGGACTTTTCAGCAGCTGACTGCAGCTCTCCAGAGAGTTGGTGAGCTTGAAGAGGAGATCAGGATCATACCAGAACTTAAAGCACAGATATGTATCTTACAGGAGGAGCGAGAGAGGCTCCTGCACACATTCCAATCCGAACCTgacaacactgtgactctggACTTTCCTAGAGGTGTGGTGAAgatggtggagaaaaaaaataaagcaaacaatGACTGGATGGATCGGGAGTATGATCAGCTGGAAGAGAATGTCAAGGCTTCCTCTGAGCAAGTTGAGGCAATTGTAATAACCACAGAAAAAAACTCACTAGCAACTAAGAGAGATCATGAAGTCGTTGAGGAGTTGCAGAAGAAAATCACAATGCTAGAGCAGAAGCTTCACGATCTTGAGTTTGATCTGAAAAAAACGACAAATCTTCTtaaggaacaggaacaggagaGTCGTATCAAGGACAAGAGAATCAATGAGTTGACCAAACAACATGCAGAAAACATCTGGGTTAAACTAGACAACGTGAGGAACACACCAGACATAGAGAACAAGTTAGAACCATCTGTGCAAACATACTCACCTGACTCTGAATCAAGTAAAGCTAACCAGGTGTGTTTAATGGAAGAATTTAAACCCTGTGCAACAACAGGACCTGCGGGATCACAAGCAGACATGGAGCACCATGTGAAAAAAGTCAGAGAGCTCCTACAGGAGCAGTGGGAGTGTCTTTGCAGAAATGAGGATTCAGGAAAAGTGCTGTCCTCTGAACATCTACACCCACGAGTCTGCTCCATCCAAAGACAGCTGGTCTCTTTAGTCCACCTCCTTACACTCTATATATCACCTGCAGGAGATGCACCACCATCAGCTCAGGAGTCCATGATGGAGGACCAAATATATGTGGTGAAGACATGGGAAAGTCCTGAACAAGACTATGGAAGAGACCGATTTGTTCTGAGCAATTCTAGCAAAGTAGTGGAGGGCAGCACGAGGCCAAAGGATCCTGCTGAGGAGGGGTTTAACCAAAAAAATTCCCAAATTGAAGAGCTGCCAGGTTCTACACTGACCTCCAGAAAGCAAGAGCTCATCGGAGAAGCCACTGCAGAGACCACACACTTGAAAGTGGCTGAAGAACATCATGAAGATCAGGCAGTAGAAAAAGAGGACAAGCAGGATGGCACATGTTCAGGAGCTGGATCAGAAGAAGCATCACATGGTGAAGGAGGAAGGGGGGTGGAGACTGACTTCATGAATGCGTGTCACTTCTTAGAGAAACACATGGATGAAGTTTCTGAACCAAATGATGAAATGAGGCAGGCTTTGACTGTGGTGTTCCAGCAGTGGTTCCACGTGTGTGCTGAGGAGAACTCGTGTGCCGACACGGTCGCTCTGTACATTAATGAAGTGGCCACAGAAACCCCCGCAGTGCTGCAGTTCCTGGTCAATATGGTGGATGATAATGGAAACACAGCCCTGCATTACAGCGTGTCCCACTCAAACTTCAGCATTGTTAAACTCCTCTTGGACACGGgtgtgtgtgacgTGGATCTGAAGAATAAGACTGGGTACACAGCGGTCATGTTGGCGTCTCTCCAGCCGGTGGACACTGATACAGATATAAAGGTGGTCCAGCAGCTGATGGAGTTCGGTGATGTTAACGCTCGTGCAGGTCAGGTGGGTCAGACGGCGCTCCACCTGGCGGTCAGACACGGCCGAGCGTCCATGGTGAGACTCCTTCTGGCACATGGAGCAAACGTTAATGCTCAGGATCAAGCGGGAACCACAGCTCTGATCAGCGCCTGTGACCGTGGACACGCCGACATTGTCCGAATTCTGCTGCAGGACCCTGACTGCGATGTGAACCTTACAGATAAGGGAAGTCGCAGCGCTCTGTCCCTGGCCACACAGGCGTCACACACCGAGATCGCAGACCTGCTTAAAGCTCGGACCACCAACACTAAAGCCCATGACAAATGCAAGATGGCTTAGATACGAGAACCTGCTCGGTGGAGAGCTCCATGAACATGTAGAAACCTTTCTGCATGTTCATTCTGGAATATCTACAGTTTTCATTATGTTTCTGTCATAATTTGCTTCATTTGAATAATAAGGCCATTTTATgatcagttattattattattattattattattattattagtcttgcCTGAAAGATGGATGCGTGGATTCATTTATGATTTTGACTGAAAGATTGCGAAAAGGTAAATTATTTGTGCTGGAGTATTTCTGTGGAAGACTTTCTACAGTTTCGCCATATATCctgtaaaataatcatcattttgTTCTACCGGTCTCtttaaattacacattttattattcagcTCTGATTATGCACAGCTTGTCAAACTCAACTGTTGACTCATTTGTAATTCTAATTCTAATCATTGTGGTTAGCGACTGTCTCATATCAGCAAATTCACATGAAAATATCCtacaaacaagttagttcctgttctcacttacgttatagcagctataaacagtcattccctcaccagcctctctttatttctcttgctgat

Function

NR:

description
PREDICTED: KN motif and ankyrin repeat domain-containing protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936576.2 False 3381 mRNA 0.46 10 27237944 27261901
XM_026936577.2 True 3493 mRNA 0.46 11 27237944 27261901

Neighbor

gene id symbol gene type direction distance location
LOC113540028 NA coding downstream 79929 27153499 ~ 27158015 (-)
cfap57 cfap57 coding downstream 94093 27108812 ~ 27143851 (-)
tmem125b LOC108267439 coding downstream 129533 27105494 ~ 27108411 (-)
LOC113540546 NA coding downstream 255735 26981189 ~ 26982209 (-)
prkci prkci,LOC107706387,LOC107668962,LOC107659412,LOC107738175,LOC107591345 coding downstream 304425 26917159 ~ 26933519 (-)
LOC113539949 LOC108267483 coding upstream 25260 27287161 ~ 27310976 (-)
si:ch211-107p11.3 LOC108267482 coding upstream 119274 27381175 ~ 27385533 (-)
insl5b LOC108268041 coding upstream 151555 27413456 ~ 27414564 (-)
cmpk cmpk1,cmpk,LOC107719256,LOC107681787,LOC107559368,LOC107671754 coding upstream 171791 27433692 ~ 27441494 (-)
slc35a3b LOC108267645 coding upstream 185354 27447255 ~ 27455713 (-)
G71918 NA non-coding downstream 23545 27214152 ~ 27214399 (-)
G71912 NA non-coding downstream 30463 27207202 ~ 27207481 (-)
G71907 NA non-coding downstream 38203 27199418 ~ 27199741 (-)
G71905 NA non-coding downstream 42131 27195490 ~ 27195813 (-)
G71903 NA non-coding downstream 46135 27191462 ~ 27191809 (-)
G71950 LOC108267486,LOC103364420,LOC106568718 non-coding upstream 12280 27274181 ~ 27274507 (-)
G71951 NA non-coding upstream 15116 27277017 ~ 27279367 (-)
G71952 NA non-coding upstream 19148 27281049 ~ 27283657 (-)
G71955 NA non-coding upstream 24338 27286239 ~ 27286698 (-)
G72073 NA non-coding upstream 139769 27401670 ~ 27402635 (-)
G71909 LOC108267490 other downstream 33758 27203783 ~ 27204186 (-)
G71832 NA other downstream 137086 27096602 ~ 27100858 (-)
G71596 NA other downstream 686914 26472080 ~ 26551030 (-)
ltb4r2b NA other downstream 861536 26371921 ~ 26376408 (-)
ccdc24 ccdc24 other downstream 2651896 24565741 ~ 24586048 (-)
trnat-ugu_3 NA other upstream 133456 27395357 ~ 27395429 (-)
trnat-ugu_4 NA other upstream 134250 27396151 ~ 27396223 (-)
LOC113540508 LOC108268039 other upstream 153366 27415267 ~ 27432678 (-)
tsen15 tsen15 other upstream 212864 27474765 ~ 27483833 (-)
pcyt1aa pcyt1a,LOC108267677,LOC108430756,LOC103040438,LOC107709348,LOC107671662,LOC107559373 other upstream 285851 27547752 ~ 27555987 (-)

Expression


Co-expression Network