vps4b (vps4b,LOC107681797,LOC107727524,LOC107710065,LOC105899228,LOC107671729)


Basic Information

Item Value
gene id vps4b
gene name vps4b,LOC107681797,LOC107727524,LOC107710065,LOC105899228,LOC107671729
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 27941464 ~ 27956911 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936599.2
CTCAAGCCTGATGGGTGTTACAGGTCAGACAATACACAATCACACGAGCTCACACACCTTCTGCTTCACCATGCTTTCAGAGACTCGCTCGTGATCACGGAGTATAATGGAGCTCACTAACTTACAGAAAGCCATAGTGATCGCCACCAAAGCCTCACTGGAGGACGAGGCTGGGAATTACGAAGAGGCCATCAAATCCTACCACCATGCTGTGAAGCATTTTCTGCACATCCTAAAGCGCGAGCCTCAGGGGAAAGACGGAAACCAGAAGATCCGAGAGAAGTGCTCTCAGTACCTGGACCGAGCCGAGAAGCTGCGGGAGTATCTAGATGAGAAACAGAAAGCTATAGATCTGGCCAGTAAGGCGGCGCAGGAGGACAAGGCGCAGAATTACGAGGAGGCACTGAGGCTGTACCAACACGCAGTTCAGTACTTCCTACACGTCATCAAATATGAAGCTCAGGGGGACAAAGCCAAACAGAGCATCAGAGCCAAGTGTGCGGAGTACCTGGACCGAGCGGAGAAGCTGAAAGAGTatctgaagaagaaggagaaagcgCCGGCTAAACCCGTCAAAGAGTCTCAGTCCGATGAAAAAGGAAACGACAGCGATGAGGGAGAAAATCCAGAGAAGAAGAAATTCCAGAACCAACTTTCAGgggCCATCGTCATGGAGAAACCAAACATCCAGTGGAACGATGTCGCCGGACTCGAAGGAGCCAAAGAGGCCCTGAAAGAAGCCGTTATTCTGCCCATTAAATTCCCCCACCTCTTCACAGgtAAGCGCACTCCATGGAGGGGGATCCTGCTCTTCGGTCCTCCTGGAACGGGAAAGTCATACCTGGCCAAGGCCGTGGCCACCGAGGCCAACAACTCCACCttcttctccatctcctcctcagACCTGGTGTCCAAGTGGCTAggagaaagtgaaaaGCTGGTGAAGAATCTGTTCGAGCTGGCCAGAGAACACAGTCCATCCATCATCTTCATCGACGAGATCGACTCTCTGTGCGGCTCCAGGAGCGAGAACGAGAGCGAGGCGGCTCGCAGGATCAAGACCGAGTTCCTGGTGCAGATGCAGGGTGTTGGGAATGACAACAAGGGAATCCTGGTGCTTGGAGCAACCAACATCCCGTGGACACTCGACTCTGCCATCAGGAGACGatttgaGAAGCGTATCTACATCCCTCTGCCGGAGGAACACGCCCGCTCCTTCATGTTTAAGCTGCATCTGGGCACCACGCCCAACAGCCTGACCGACGCTGACTACGTCACGCTGGGCAAGAAGACCGAGGGCTACTCGGGCGCCGACATCAGCATCATAGTGCGCGACGCTCTTATGCAGCCCGTCAGGAAAGTGCAATCCGCTACACACTTCAAAAGGGTACGAGGACCCTCCAGAGACAACCCCAACGTGATCATGGATGACCTTCTGACCCCGTGCTCTCCCGGAGATCCTCAGGCCATCGAGATGTCATGGATGGAGGTTCCTGGAGATAAACTCCTGGAGCCTGTGGTTAGCATGGCGGACATGTTGCGATCGCTGGCCAACACGAAGCCCACCGTGAACGAGCAGGATCTGGAGAAGCTGAAGAAATTCACAGAGGATTTTGGCCAGGAGGGTTGAGCGAGGAACCAAAGCAGCAGGGTCCAGGATTTGTAAAGTCTTCTCCTCGTCTACTCTTCCctcttttcccctcttttcttcCTGGACTTCCTGTTGGACTGGCGAGTGGAAGGACAGCTCAGTAAAGGCCAGTCTGGAGCCTACATGGGACCGGATTTACATTTATGCGTTTCATTTTCTAATAGTAGTTATTTTGGGTTTTTAAAAGCATTCTCAGTTTATTTGGATTCACTACGTCACTGGTggttaaactgtaaaaatttcTGTTAAATAACGAGCACTAATTTGAATTGGGCATGGGGCTGATGTTCAGAATTTTCCCATCATGATAATCTCCAAACTTCATATCGTGGTTTACAATATTATCAAGTGGCTATACACTTACAAGCACAGAGGACACTATCTAGGCAGTGCAAAGGTAGTAACaatgttgtgcatgctgaatATCACAGTATATCACATTTCTGAGTATCGGCACGTGCCTCAATCTGAGAAGTGAGTAGTGATGAGCCGTATTTGGATCGTGTCAGTTTGTGGGCTGTGTTCCAATTCGCACATGATGAAGCTGGCCGTAGAGCTCCCCTTTATTCCTCCATACAAGTGCCGTTTAAAGAGTCGTGGACGTAACCGCAAACACGATAttgaaatctttatttaaatagcCATCAAAAACAGTGATTTTAGGTTTTACATTTGGCAAGAGCCCTTTCAGTCTACAATTTAATGCGCCCTAGTCGACTTTGATTACCACTCGGGAGTGTGTACCATCGACATCACACAGCTATCTCTAGCTACTTTACATAGCTGGTTTCCGTGGTGATTTGTTCAGGCAATTGCTAGCAGGAATGATACAGTTGGTTTCCATGGCTATTTGTACAGGCTATCTCTAGCAGAAAATGACAGTTTGGTTTCCACGGCGATTTCTACAGGCTAATGCTAGCAAAAACAACATGGTTTCCATGGTGATTTGTACAGGCTACTTTTTCCTGCTAGCATGCTCATTTTAACGCTCATTCATCGCTTCAGCGATCAGCTTCGTCCGCCATTTTGAAAAGGAAATTGCATCAGACCAGCATGAGTTCTAGGTAAGATTTCCTCCTGAAGTGTACAGTGATGTTAACGTGATCCCTCAGGACTTCAAAGGGCTTATCTGATGAAAGTAACGCAAACTGattaaagtaatggcacccaAGATGGCGACTAAGACGGTGGGGTGTGAATTCAGTTGTAATACACTTTTACCTTTTTCCTTTGAGCTTTCCCTGTGCTAATTATGCTAGCTAATATCATGCTAGCAGCGTGAAGTTTGCAAAGTTTCAGATTCGTACAGATCAGAGTCGCTACATGTAACTCAAATTGATCTCagctatttaaatatttcattatgttAGAATGCAACGCATTTTAGGGCTTATAATGAAACTGAACAGCGCTTAAGATGGCACCGATGGGCAAAATCAGAGGAGGAGTCAACAAGGGCGCATGAAACGCAAAATTGTTACAAGGCTTTGATGGGTGTAGACCTTGTGAAGGTCACATGACTACGATAACATCTTAAgttctgtaaatgttttgtgttataTTACGGAACCGGGAATCTTTAAGTAgtatatatcaaatatattgTACTTTCTTTCAAATTCAATGTTATTTTTGGCCAACAATTATGGGATGTGACAGGAAGGCGTCTTAGTGACTCATGGTCACGTGACGCAAAgccaactattttttttttttttttttttttttggaccatCTTGCTGCAGCAAACTTGTGCCTTCAATAcgtttttcttttacataaaaacaaaccaaatctTTGTGTATAtctcataaatgttaataaacatttatgcgAGGCAAAAAAAGATATTTGCACATTTCACTTCATTCTCCTTCACTGTCTGATTGGATACAGCTTCTCTCCTGTGCACTTACGGTATTGGGGTTTCTATATAacaaactttacattttatcCTTCATAgcctttttgttgtttaaactTAAAGTTTTTGTTTCTTCATCAGATTTTGGTGTTGCTCATGTACTTCTTTTATCATACAcgtgtaaataaaagctgagatTGAAAAACAA
>XM_026936600.2
GTGATTGTCGTAGGCGGAAGTGACATTCGACATTTTTTAACGCGGAAGTTTTCTCCTCCATTATCCAGCAGGATTTAAATAACAacgcagaaaagaaaaagcgcTTCGTGACTTCGCGATTATTTGTATGATTTGGAAAACATCGtagtacttttttaaatatcagcaGAAAAAACACGCCGTGTTTTAGTAAAATCGCGATATTTTCCCAGCCCCTATGGCTGCCAACAACAACTTGCAGAAAGCTATAGATCTGGCCAGTAAGGCGGCGCAGGAGGACAAGGCGCAGAATTACGAGGAGGCACTGAGGCTGTACCAACACGCAGTTCAGTACTTCCTACACGTCATCAAATATGAAGCTCAGGGGGACAAAGCCAAACAGAGCATCAGAGCCAAGTGTGCGGAGTACCTGGACCGAGCGGAGAAGCTGAAAGAGTatctgaagaagaaggagaaagcgCCGGCTAAACCCGTCAAAGAGTCTCAGTCCGATGAAAAAGGAAACGACAGCGATGAGGGAGAAAATCCAGAGAAGAAGAAATTCCAGAACCAACTTTCAGgggCCATCGTCATGGAGAAACCAAACATCCAGTGGAACGATGTCGCCGGACTCGAAGGAGCCAAAGAGGCCCTGAAAGAAGCCGTTATTCTGCCCATTAAATTCCCCCACCTCTTCACAGgtAAGCGCACTCCATGGAGGGGGATCCTGCTCTTCGGTCCTCCTGGAACGGGAAAGTCATACCTGGCCAAGGCCGTGGCCACCGAGGCCAACAACTCCACCttcttctccatctcctcctcagACCTGGTGTCCAAGTGGCTAggagaaagtgaaaaGCTGGTGAAGAATCTGTTCGAGCTGGCCAGAGAACACAGTCCATCCATCATCTTCATCGACGAGATCGACTCTCTGTGCGGCTCCAGGAGCGAGAACGAGAGCGAGGCGGCTCGCAGGATCAAGACCGAGTTCCTGGTGCAGATGCAGGGTGTTGGGAATGACAACAAGGGAATCCTGGTGCTTGGAGCAACCAACATCCCGTGGACACTCGACTCTGCCATCAGGAGACGatttgaGAAGCGTATCTACATCCCTCTGCCGGAGGAACACGCCCGCTCCTTCATGTTTAAGCTGCATCTGGGCACCACGCCCAACAGCCTGACCGACGCTGACTACGTCACGCTGGGCAAGAAGACCGAGGGCTACTCGGGCGCCGACATCAGCATCATAGTGCGCGACGCTCTTATGCAGCCCGTCAGGAAAGTGCAATCCGCTACACACTTCAAAAGGGTACGAGGACCCTCCAGAGACAACCCCAACGTGATCATGGATGACCTTCTGACCCCGTGCTCTCCCGGAGATCCTCAGGCCATCGAGATGTCATGGATGGAGGTTCCTGGAGATAAACTCCTGGAGCCTGTGGTTAGCATGGCGGACATGTTGCGATCGCTGGCCAACACGAAGCCCACCGTGAACGAGCAGGATCTGGAGAAGCTGAAGAAATTCACAGAGGATTTTGGCCAGGAGGGTTGAGCGAGGAACCAAAGCAGCAGGGTCCAGGATTTGTAAAGTCTTCTCCTCGTCTACTCTTCCctcttttcccctcttttcttcCTGGACTTCCTGTTGGACTGGCGAGTGGAAGGACAGCTCAGTAAAGGCCAGTCTGGAGCCTACATGGGACCGGATTTACATTTATGCGTTTCATTTTCTAATAGTAGTTATTTTGGGTTTTTAAAAGCATTCTCAGTTTATTTGGATTCACTACGTCACTGGTggttaaactgtaaaaatttcTGTTAAATAACGAGCACTAATTTGAATTGGGCATGGGGCTGATGTTCAGAATTTTCCCATCATGATAATCTCCAAACTTCATATCGTGGTTTACAATATTATCAAGTGGCTATACACTTACAAGCACAGAGGACACTATCTAGGCAGTGCAAAGGTAGTAACaatgttgtgcatgctgaatATCACAGTATATCACATTTCTGAGTATCGGCACGTGCCTCAATCTGAGAAGTGAGTAGTGATGAGCCGTATTTGGATCGTGTCAGTTTGTGGGCTGTGTTCCAATTCGCACATGATGAAGCTGGCCGTAGAGCTCCCCTTTATTCCTCCATACAAGTGCCGTTTAAAGAGTCGTGGACGTAACCGCAAACACGATAttgaaatctttatttaaatagcCATCAAAAACAGTGATTTTAGGTTTTACATTTGGCAAGAGCCCTTTCAGTCTACAATTTAATGCGCCCTAGTCGACTTTGATTACCACTCGGGAGTGTGTACCATCGACATCACACAGCTATCTCTAGCTACTTTACATAGCTGGTTTCCGTGGTGATTTGTTCAGGCAATTGCTAGCAGGAATGATACAGTTGGTTTCCATGGCTATTTGTACAGGCTATCTCTAGCAGAAAATGACAGTTTGGTTTCCACGGCGATTTCTACAGGCTAATGCTAGCAAAAACAACATGGTTTCCATGGTGATTTGTACAGGCTACTTTTTCCTGCTAGCATGCTCATTTTAACGCTCATTCATCGCTTCAGCGATCAGCTTCGTCCGCCATTTTGAAAAGGAAATTGCATCAGACCAGCATGAGTTCTAGGTAAGATTTCCTCCTGAAGTGTACAGTGATGTTAACGTGATCCCTCAGGACTTCAAAGGGCTTATCTGATGAAAGTAACGCAAACTGattaaagtaatggcacccaAGATGGCGACTAAGACGGTGGGGTGTGAATTCAGTTGTAATACACTTTTACCTTTTTCCTTTGAGCTTTCCCTGTGCTAATTATGCTAGCTAATATCATGCTAGCAGCGTGAAGTTTGCAAAGTTTCAGATTCGTACAGATCAGAGTCGCTACATGTAACTCAAATTGATCTCagctatttaaatatttcattatgttAGAATGCAACGCATTTTAGGGCTTATAATGAAACTGAACAGCGCTTAAGATGGCACCGATGGGCAAAATCAGAGGAGGAGTCAACAAGGGCGCATGAAACGCAAAATTGTTACAAGGCTTTGATGGGTGTAGACCTTGTGAAGGTCACATGACTACGATAACATCTTAAgttctgtaaatgttttgtgttataTTACGGAACCGGGAATCTTTAAGTAgtatatatcaaatatattgTACTTTCTTTCAAATTCAATGTTATTTTTGGCCAACAATTATGGGATGTGACAGGAAGGCGTCTTAGTGACTCATGGTCACGTGACGCAAAgccaactattttttttttttttttttttttttggaccatCTTGCTGCAGCAAACTTGTGCCTTCAATAcgtttttcttttacataaaaacaaaccaaatctTTGTGTATAtctcataaatgttaataaacatttatgcgAGGCAAAAAAAGATATTTGCACATTTCACTTCATTCTCCTTCACTGTCTGATTGGATACAGCTTCTCTCCTGTGCACTTACGGTATTGGGGTTTCTATATAacaaactttacattttatcCTTCATAgcctttttgttgtttaaactTAAAGTTTTTGTTTCTTCATCAGATTTTGGTGTTGCTCATGTACTTCTTTTATCATACAcgtgtaaataaaagctgagatTGAAAAACAA

Function

symbol description
vps4b Predicted to enable ATP hydrolysis activity and microtubule-severing ATPase activity. Acts upstream of or within odontogenesis. Predicted to be located in late endosome membrane. Predicted to be active in nucleus. Is expressed in ceratobranchial 5 primary tooth; pharyngeal arch 3-7; and pharyngeal pouch. Orthologous to human VPS4B (vacuolar protein sorting 4 homolog B).

NR:

description
PREDICTED: vacuolar protein sorting-associated protein 4B isoform X1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG:

id description
K12196 VPS4; vacuolar protein-sorting-associated protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936599.2 True 3723 mRNA 0.46 13 27941464 27956911
XM_026936600.2 False 3624 mRNA 0.45 11 27947400 27956911

Neighbor

gene id symbol gene type direction distance location
kmt2cb LOC108267465 coding upstream 2040 27857336 ~ 27939424 (+)
arhgap21b LOC108267702 coding upstream 242808 27648814 ~ 27698656 (+)
prtfdc1b prdc1,LOC108430708,LOC105891346,LOC105019119 coding upstream 301503 27628448 ~ 27639961 (+)
trnat-ugu_8 NA coding upstream 320081 27621311 ~ 27621383 (+)
trnat-ugu_6 NA coding upstream 320787 27620605 ~ 27620677 (+)
kdsr kdsr,LOC106599247,LOC102792240 coding downstream 974 27957885 ~ 27966288 (+)
bcl2b LOC108267470 coding downstream 15730 27972641 ~ 28008193 (+)
nmur1b LOC108268311 coding downstream 90288 28047199 ~ 28054319 (+)
LOC113539840 LOC108267776 coding downstream 108156 28065067 ~ 28069266 (+)
pfn2l pfn2,pfn2l,LOC107681776 coding downstream 147594 28104505 ~ 28111007 (+)
LOC113540592 NA non-coding upstream 382037 27556085 ~ 27559427 (+)
LOC113540696 NA non-coding upstream 383562 27557765 ~ 27557902 (+)
LOC113540695 NA non-coding upstream 384816 27556517 ~ 27556648 (+)
G72118 NA non-coding upstream 385758 27553127 ~ 27555706 (+)
LOC113540179 NA non-coding upstream 453753 27483820 ~ 27487711 (+)
G72236 NA non-coding downstream 54833 28011744 ~ 28012459 (+)
G72276 LOC108267477 non-coding downstream 157540 28114451 ~ 28122142 (+)
G72336 NA non-coding downstream 512037 28468948 ~ 28471765 (+)
G72378 NA non-coding downstream 618011 28574922 ~ 28578950 (+)
G72404 NA non-coding downstream 662913 28619824 ~ 28637201 (+)
sgip1b LOC108267185,LOC108430747,LOC107593781,LOC107719259,LOC107681818,LOC107709351 other upstream 535066 27384807 ~ 27406398 (+)
gng7 NA other upstream 1059994 26872676 ~ 26881470 (+)
LOC117597079 LOC108267150,LOC107738160 other upstream 1565638 26353189 ~ 26375826 (+)
zgc:66427 zgc:66427,LOC108267510,LOC107738154,LOC101067737,LOC107100876,LOC103396713,LOC104950485,LOC107659393,LOC107668973,LOC107706368,LOC107557724,LOC107591360 other upstream 1648680 26288290 ~ 26292784 (+)
G71385 NA other upstream 1712273 26228764 ~ 26229191 (+)
insig1 insig1 other downstream 345940 28302851 ~ 28383422 (+)
htr5ab htr5a,htr5ab,LOC108412811,LOC103024346,LOC107684958,LOC107659435,LOC107591053,LOC107742155,LOC107598724 other downstream 359493 28316404 ~ 28338173 (+)
gng5 NA other downstream 801634 28758545 ~ 28761451 (+)
selenot1a selenot,selt1a,LOC107681817,LOC107708642 other downstream 835936 28792847 ~ 28797159 (+)
G72873 NA other downstream 917445 28874356 ~ 28912104 (+)

Expression


Co-expression Network