pdcd10b (pdc10,LOC108411198,LOC107557361,LOC103039132,LOC107706406,LOC105906142,LOC107684411)


Basic Information

Item Value
gene id pdcd10b
gene name pdc10,LOC108411198,LOC107557361,LOC103039132,LOC107706406,LOC105906142,LOC107684411
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 26689037 ~ 26696324 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936651.2
CACATACGCAGCTCGCGCAGAACACTTCCGCCTTCTGAAGCGGAGAAGCTAGCGACTCTATGAGCGGAGTTCGCGGTCTGAGCGGCGGCATAGCGCTGTTTAATCTTGGCCTGGGTTTCTAACTGAAAGATTTAAAAGGATTCCCCGGAGTCGGAGTCGTGGTGGAGTTGGAGTCGCGGTGTTCCCGGGGCCGGAGTCGCAGTGTTCTCCGAATCGTGTTCCTTCACCACTTTCTCCAGTTCCAGTAGCTTTTCCTCCCATGCGGTTGTTGATGTATGGGGGTTAAAATGGAAGAGATGAAGAATGAAGCTGAGACGAGTTCAATGGTCTCGATGACGTTATACGCCGTCATGTATCCCGTCTTCAATGAGCTGGAGAGAATAAACCTGTCAGCAGCTCAGACTCTGCGTGCAGCATTTATTAAAgcAGAGAAGGAGAACCCAGGTCTCACTCAGGACATCATCATGAAGATCCTGGAGAAGAAAAATGTGGAGATTAATTTCACAGAGTCGTTACTACGCATGGCTGCGGACGATGTTGAAGaGTATCTGATCGAGCGGCCAGAGCAGGAGTTTCAGGATCTGAATGATAAAGCACGGGCGCTGAAGCAGATCCTGAGTAAAATTCCAGATGAGATAAATGACAGAGTGCGCTTCCTCCAGACTATAAAAGACATTGCGAGTGCCATAAAGGAGCTGCTGGACACCGTCAACAACGTCTTCAAGAAATACCAGTATCAGAACCGCAGggCGCTTGAACACCAAAAGAAGGAATTTGTGAAATACTCGAAAAGTTTCAGCGACACACTGAAGACCTACTTCAAAGACGGAAAAGCaataaatgtgttcattagTGCCAACCGGCTGATCCACCAAACAAACCTGATCCTGCAGACCTTCAAAACCGTTGCCTAGGaaaccgagagagagagcgagagagagagcgagagagagagcgagagagagagcgagagagagagcgagagagagagcgagagtatGGATGAGTGTGAGGGTTTATGGGAAATTcctgttataatgtaatatacaaaagtcttttgtttctttcatctttttgtctttttccctttttcctctttttgaaCGTGTAATTTATAAACCGGaggaaactaataaaaaaataaacatgca
>XM_026936653.2
GCTCGCGCAGAACACTTCCGCCTTCTGAAGCGGAGAAGCTAGCGACTCTATGAGCGGAGTTCGCGGTCTGAGCGGCGGCATAGCGCTGTTTAATCTTGGCCTGGGTTTCTAACTGAAAGATTTAAAAGTACTGATCCCGTCACAGGATTCCCCGGAGTCGGAGTCGTGGTGGAGTTGGAGTCGCGGTGTTCCCGGGGCCGGAGTCGCAGTGTTCTCCGAATCGTGTTCCTTCACCACTTTCTCCAGTTCCAGTAGCTTTTCCTCCCATGCGGTTGTTGATGTATGGGGGTTAAAATGGAAGAGATGAAGAATGAAGCTGAGACGAGTTCAATGGTCTCGATGACGTTATACGCCGTCATGTATCCCGTCTTCAATGAGCTGGAGAGAATAAACCTGTCAGCAGCTCAGACTCTGCGTGCAGCATTTATTAAAgcAGAGAAGGAGAACCCAGGTCTCACTCAGGACATCATCATGAAGATCCTGGAGAAGAAAAATGTGGAGATTAATTTCACAGAGTCGTTACTACGCATGGCTGCGGACGATGTTGAAGaGTATCTGATCGAGCGGCCAGAGCAGGAGTTTCAGGATCTGAATGATAAAGCACGGGCGCTGAAGCAGATCCTGAGTAAAATTCCAGATGAGATAAATGACAGAGTGCGCTTCCTCCAGACTATAAAAGACATTGCGAGTGCCATAAAGGAGCTGCTGGACACCGTCAACAACGTCTTCAAGAAATACCAGTATCAGAACCGCAGggCGCTTGAACACCAAAAGAAGGAATTTGTGAAATACTCGAAAAGTTTCAGCGACACACTGAAGACCTACTTCAAAGACGGAAAAGCaataaatgtgttcattagTGCCAACCGGCTGATCCACCAAACAAACCTGATCCTGCAGACCTTCAAAACCGTTGCCTAGGaaaccgagagagagagcgagagagagagcgagagagagagcgagagagagagcgagagagagagcgagagagagagcgagagtatGGATGAGTGTGAGGGTTTATGGGAAATTcctgttataatgtaatatacaaaagtcttttgtttctttcatctttttgtctttttccctttttcctctttttgaaCGTGTAATTTATAAACCGGaggaaactaataaaaaaataaacatgca
>XM_034304157.1
CAGAACACTTCCGCCTTCTGAAGCGGAGAAGCTAGCGACTCTATGAGCGGAGTTCGCGGTCTGAGCGGCGGCATAGCGCTGTTTAATCTTGGCCTGGGTTTCTAACTGAAAGATTTAAAAGgaagggcgtgtgtgtgtgtgtcagagctggatcagGATTCCCCGGAGTCGGAGTCGTGGTGGAGTTGGAGTCGCGGTGTTCCCGGGGCCGGAGTCGCAGTGTTCTCCGAATCGTGTTCCTTCACCACTTTCTCCAGTTCCAGTAGCTTTTCCTCCCATGCGGTTGTTGATGTATGGGGGTTAAAATGGAAGAGATGAAGAATGAAGCTGAGACGAGTTCAATGGTCTCGATGACGTTATACGCCGTCATGTATCCCGTCTTCAATGAGCTGGAGAGAATAAACCTGTCAGCAGCTCAGACTCTGCGTGCAGCATTTATTAAAgcAGAGAAGGAGAACCCAGGTCTCACTCAGGACATCATCATGAAGATCCTGGAGAAGAAAAATGTGGAGATTAATTTCACAGAGTCGTTACTACGCATGGCTGCGGACGATGTTGAAGaGTATCTGATCGAGCGGCCAGAGCAGGAGTTTCAGGATCTGAATGATAAAGCACGGGCGCTGAAGCAGATCCTGAGTAAAATTCCAGATGAGATAAATGACAGAGTGCGCTTCCTCCAGACTATAAAAGACATTGCGAGTGCCATAAAGGAGCTGCTGGACACCGTCAACAACGTCTTCAAGAAATACCAGTATCAGAACCGCAGggCGCTTGAACACCAAAAGAAGGAATTTGTGAAATACTCGAAAAGTTTCAGCGACACACTGAAGACCTACTTCAAAGACGGAAAAGCaataaatgtgttcattagTGCCAACCGGCTGATCCACCAAACAAACCTGATCCTGCAGACCTTCAAAACCGTTGCCTAGGaaaccgagagagagagcgagagagagagcgagagagagagcgagagagagagcgagagagagagcgagagagagagcgagagtatGGATGAGTGTGAGGGTTTATGGGAAATTcctgttataatgtaatatacaaaagtcttttgtttctttcatctttttgtctttttccctttttcctctttttgaaCGTGTAATTTATAAACCGGaggaaactaataaaaaaataaacatgca
>XM_034304158.1
CACATACGCAGCTCGCGCAGAACACTTCCGCCTTCTGAAGCGGAGAAGCTAGCGACTCTATGAGCGGAGTTCGCGGTCTGAGCGGCGGCATAGCGCTGTTTAATCTTGGCCTGGGTTTCTAACTGAAAGATTTAAAAGGATTCCCCGGAGTCGGAGTCGTGGTGGAGTTGGAGTCGCGGTGTTCCCGGGGCCGGAGTCGCAGTGTTCTCCGAATCGTGTTCCTTCACCACTTTCTCCAGTTCCAGTAGCTTTTCCTCCCATGCGGTTGTTGATGTATGGGGGTTAAAATGGAAGAGATGAAGAATGAAGCTGAGACGAGTTCAATGGTCTCGATGACGTTATACGCCGTCATGTATCCCGTCTTCAATGAGCTGGAGAGAATAAACCTGTCAGCAGCTCAGACTCTGCGTGCAGCATTTATTAAAgcAGAGAAGGAGAACCCAGGTCTCACTCAGGACATCATCATGAAGATCCTGGAGAAGAAAAATGTGGAGATTAATTTCACAGAGTCGTTACTACGCATGGCTGCGGACGATGTTGAAGaGTATCTGATCGAGCGGCCAGAGCAGGAGTTTCAGGATCTGAATGATAAAGCACGGGCGCTGAAGCAGATCCTGAGTAAAATTCCAGATGAGATAAATGACAGAGTGCGCTTCCTCCAGACTATAAAAGACATTGCGAGTGCCATAAAGGAGCTGCTGGACACCGTCAACAACGTCTTCAAGAAATACCAGTATCAGAACCGCAGggCGCTTGAACACCAAAAGAAGGAATTTGTGAAATACTCGAAAAGTTTCAGCGACACACTGAAGACCTACTTCAAAGACGGAAAAGCaataaatgtgttcattagTGCCAACCGGCTGATCCACCAAACAAACCTGATCCTGCAGACCTTCAAAACCGTTGCCTAGGaaaccgagagagagagcgagagagagagcgagagtatGGATGAGTGTGAGGGTTTATGGGAAATTcctgttataatgtaatatacaaaagtcttttgtttctttcatctttttgtctttttccctttttcctctttttgaaCGTGTAATTTATAAACCGGaggaaactaataaaaaaataaacatgca

Function

NR:

description
PREDICTED: programmed cell death protein 10-B-like

GO: NA

KEGG:

id description
K18269 PDCD10; programmed cell death protein 10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936651.2 False 1151 mRNA 0.47 8 26689037 26696324
XM_026936653.2 False 1158 mRNA 0.47 8 26689047 26696324
XM_034304157.1 True 1169 mRNA 0.47 9 26689054 26696324
XM_034304158.1 False 1103 mRNA 0.46 9 26689037 26696324

Neighbor

gene id symbol gene type direction distance location
ptx3b NA coding upstream 1023 26685510 ~ 26688014 (+)
klhl6 klhl6 coding upstream 15026 26666239 ~ 26674011 (+)
LOC113540735 NA coding upstream 24955 26663971 ~ 26664082 (+)
pak2a pak2a,LOC108267562,LOC108411195,LOC107659428,LOC107706409,LOC107557297,LOC107738196,LOC107684413 coding upstream 25322 26643100 ~ 26663715 (+)
ing5b ing5 coding upstream 46803 26632809 ~ 26642234 (+)
nrd1a nrd1a,LOC108268052 coding downstream 22906 26719230 ~ 26735596 (+)
si:dkey-193b15.8 LOC108268053 coding downstream 39119 26735443 ~ 26738278 (+)
ifi44c2 NA coding downstream 55312 26751636 ~ 26764604 (+)
apoda.1 LOC108267187 coding downstream 70660 26766984 ~ 26770244 (+)
gadd45bb LOC108267448 coding downstream 119737 26816061 ~ 26818849 (+)
G71519 NA non-coding upstream 20909 26667762 ~ 26668128 (+)
G71485 NA non-coding upstream 138011 26472575 ~ 26551026 (+)
G71482 NA non-coding upstream 224723 26464011 ~ 26464314 (+)
G71408 NA non-coding upstream 394055 26294755 ~ 26294982 (+)
LOC117597184 NA non-coding upstream 462622 26225431 ~ 26226415 (+)
G71550 NA non-coding downstream 88248 26784572 ~ 26786560 (+)
G71557 NA non-coding downstream 111733 26808057 ~ 26856605 (+)
G71819 NA non-coding downstream 346379 27042703 ~ 27042912 (+)
G71827 NA non-coding downstream 377517 27073841 ~ 27074076 (+)
G71864 NA non-coding downstream 499677 27196001 ~ 27196373 (+)
LOC117597079 LOC108267150,LOC107738160 other upstream 313211 26353189 ~ 26375826 (+)
zgc:66427 zgc:66427,LOC108267510,LOC107738154,LOC101067737,LOC107100876,LOC103396713,LOC104950485,LOC107659393,LOC107668973,LOC107706368,LOC107557724,LOC107591360 other upstream 396253 26288290 ~ 26292784 (+)
G71385 NA other upstream 459846 26228764 ~ 26229191 (+)
LOC117597118 LOC108261462,LOC108261092,LOC108261095 other upstream 464999 26216064 ~ 26224038 (+)
LOC113539772 kiaa0040 other upstream 787031 25897017 ~ 25902006 (+)
gng7 NA other downstream 176352 26872676 ~ 26881470 (+)
sgip1b LOC108267185,LOC108430747,LOC107593781,LOC107719259,LOC107681818,LOC107709351 other downstream 688483 27384807 ~ 27406398 (+)
insig1 insig1 other downstream 1606527 28302851 ~ 28383422 (+)
htr5ab htr5a,htr5ab,LOC108412811,LOC103024346,LOC107684958,LOC107659435,LOC107591053,LOC107742155,LOC107598724 other downstream 1620080 28316404 ~ 28338173 (+)
gng5 NA other downstream 2062221 28758545 ~ 28761451 (+)

Expression


Co-expression Network