lamc1 (lamc1,LOC107658363,LOC107563558,LOC107557259,LOC107678923,LOC106599430)


Basic Information

Item Value
gene id lamc1
gene name lamc1,LOC107658363,LOC107563558,LOC107557259,LOC107678923,LOC106599430
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 31619845 ~ 31684467 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936654.2
AAAGAGTTCTCAGCCGGAAGTAGATGTAGAAAGTTTTTTCCGCAGTGGAGCTGCTGGACCTGCGCACTAGCGGGCAGGGTGTAGCCTGTAGCCTGGTCAGATGTAGAACTTTTCCTCTGCGACTTTTCTCCTTCATGGCGGCGCTCAGGGATCAGTAGCTGAAGAAGGAGCGGAATAAagtggagaaaagagagaagagaaaggagagaataCAGAGCAGGAAGGGTGGAAGTGCATGGTTTTGTCTGGGGCTCCGCAGGGCTGTTGAGAAGGCGCAGGGAGAGCAGGAACAGGAAGGTGCTCGGTTTGGGGAACGCGCCAGGACGCACGGAGACGACAATGCGCGGCGTGGCTCTGGCTCTGCTGGCTCTGCTGGCCGTGTGCGCGCGGCGCGCTCACGCAGCCATGGACGAGTGCGTGGACGAGCTGAGCCGCCGGCCTCAGAGCTGCATGCCCGAGTTCGTGAACGCGGCGTTCAACATGACCGTGGTGGCCACCAACACATGCGGCTCTCCTCCTGAAGAGTACTGCGTGCAGACCGGCGTCACCGGAGTCACCAAGTCGTGCCACATCTGCGATGCCCGAGACCCGAGACAGCATCACAGCGCCGTCTACCTCACCGACTACAACAACCAGGCGGACATCACCTGGTGGCAGAGCCAGACCATGCTCGCAGGAGTCCAGTACCCCACCTCCATCAACTTAACCCTGCACCTAGgaaaggcCTTCGATATCACCTACGTGCGTCTGAAGTTCCACACCAGCCGCCCCGAGAGCTTCGTCATCTACAAGCGCACGCGCGAGGACGGCCCGTGGATCCCGTACCAGTACTACAGCGGCTCGTGCGAGAAAACCTACGGCAAGGTGAACCGAGGTTTCATCCGCACCGGCGAGGACGAGCAGCAGGCGCTCTGCACGGACGAGTTCAGCGACATCTCGCCGCTCACCGCAGGAAACGTGGCCTTCTCGACACTCGAGGGACGCCCCAGCGCATACAACTTCGACAACAGCCTGGTGCTTCAGGATTGGGTGACTGCGACAGACATCAGAGTGACCCTGAACAGGCTGAACACGTTCGGAGATGAAGTGTTCAACGACCCCAAGGTCCTGAAGTCGTACTACTACGCCATCTCCGACTTTGCTGTGGGAGGAAGGTGCAAGTGTAACGGCCACGCCAGCGAGTGTGTGAAGAACGAGTACAGCAGGCTGGTGTGTAACTGCAAGCACAACACAGAGGGCGATGACTGCAACGTGTGTAAACCCTTCTATAACGACCGGCCGTGGAAAAGAGCCACCACTGACAACGCCAACGAGTGCCTGCcatgtaACTGCAATGGCAAGAGCAGCGAATGTTTCTTCGACCCGGCTCTGTACCGTGCCACGGGTCACGGAGGTCACTGCCGCAACTGCGCCGACAACACGGACGGCCCCAACTGCGAGCGCTGCCTGGACAACTACTACAGAGTGGGTCCAAACCAGCGCTGCCTGCCCTGCAGCTGTAACCCTGTTGGCTCTCTGAGCACTCAGTGCGACAACACGGGCCGCTGTAGCTGCAAACCGGGTGTGATGGGAGATAAGTGTGACCGCTGCCAGCCCGGATACCACTCCCTGACCGAGGCAGGCTGCAGCCCCTGCTCCTGCAACCCTGCCGGAAGCACACAGGAGTGCGATGTCAATACAGGACGCTGCCAGTGCAAGGAAAACGTGGACGGCTTCAGCTGCGACAGGTGTAAACTCGGCTTCTTCAACCTGGACCCCCAGAATCCTCAGGGATGCATGCCGTGCTTCTGCTTCCATCATTCCACTGTGTGTGCGAGTGCAGAAGGCTACAGCATACACACCCTCAAGTCCACCTTTGATCAAGGTGATGAAGGCTGGAAGGGTCAGCAGAGAGACAGCTCCAGCGTGCCAGTGCACTGGTCTCCGAGCTCTCAGGAGATCTCGCTCATTTCAGAGGATTACTTCCCCATGTACTTTGTGGCTCCAGAGAAATTTTTGGGGAACCACATCCTGAGCTACGGTCAGAACCTGACACTCAACTTCCGGGTGGATCGCCGTGACACTCGTCTTTCAGCCGAGGATGTGGTGCTGGAGGGGGCAGGACTCCGCATCGCTGTGCCGCTCATCGCTCAGGGAAACGCTTATCCTGACGACCAGATGCAGACCTATGTGTTCAGGCTCCATCACACCCCAGACTCCTCTACCTGGAGACCAGAGCTGAAACACGCAGAGTTCCAGAAGCTTCTCCACAATCTTACTTCCATCAAGATCCGTGGAACCTACAGCGAGAGAAGTGGTGGATATCTGGATAACATGTCTTTGGTGACTGCGCGGCGAGGACACGGGGATCCAGCACGCTGGGTGGAGAAGTGTTCATGTCCTCCCGGCTACGAGGGTCAGCACTGTGGGAAATGCGCTCTGGGATACAGGAGGAGCCAACCAGAGCTGGGTCAATTCAGCCCCTGTGAAACCTGCAACTGCAATGGCCACAGCGACACCTGCGACCCTGTAACAGGAATGTGTAACTGTGAGCACAATACATTTGGCATGAGCTGTGAGAGGTGTAAGGATGGTTTCTATGGCGATGCCACAGTGGGTTCGGCTTCTGACTGTAAACCGTGCCCGTGTCCTGCAGGAACCGCCTGCGCGATCGTGCCCAAAACCAAAGAGGTGGTGTGCACCAACTGTCCGCTCGGCACCACAGGGAAACGTTGCGAGCTTTGCGACGACGGATTCTTCGGCCCCCCACAAAAAGTTAACGGTGTAGTGAGGGTGTGCCGGGCGTGCAACTGCAACAATAACATCGACCCCAACGCCGTGGGCAACTGTGACCGCGATAGTGGCGAGTGCCTCAAGTGCATCTACAACACGGACGGCTTTTTCTGTGATCGCTGCAAAGATGGTTACTATGGCAACGCCTTGGCTAGCAACCCAGCTGAAAAGTGCAAAGCTTGTGCGTGCTCTCGGTACGGCACGGTGGACGGACAGAAGACCTGCACGCAGGTGACGGGGCAGTGCGAGTGTCTCCCTCACGTCACCAACCGAGACTGCAGCGCCTGTGAGCCCGGCTACTACAACCTTCAGAGCGGAGAAGGCTGCCAACGCTGCAACTGCAACCCTGTTGGCTCCACGAATGGGCAGTGTGACATTGTGAGTGGACAGTGCGAGTGCCAGCCTGGGGTCAAGGGTCAGCACTGTGAGCGCTGTGAAGTCAACTTCTTCGGCTTCAGCTCGTCTGGATGCAAACCCTGCGACTGCGACCCTGAGGGCTCGCGGACGGCTCAGTGCAGAGACGACGGCCGGTGCGAGTGTCGGCCCGGCTTCGTCGGTAATCGCTGTGATATGTGTGAGGAGAACTACTTCTACAACCGCTCTGTCTCTGGCTGCCAACAGTGTCCCAACTGCTACAGTCTCGTCAGGGACAAGGTGAACCAGCAGAGACAGAAGCTCCATGACCTGCAGAATCTGATCGACAACTTGGGCAGCCAGGATACAGTGAGCGACAAAGCCTTCGAAGACCGTCTCAAAGAGGCTGAGAAGACCATCATGGATTTACTGAAGGAGGCTCAGGCCAGCAAAGAGGTGGACAAAGACCTCTTGGATCGTCTTAAGAGCATCAACAGCACGCTGACGACGCAGTGGAACCGGCTGCAGAACATCAGGAACACCGTGGAAGACACCGGAAACCTGGCGGATAAGGCACGCAGCAGAGTGAGCGAGACGGAAAAACTCATCCAGCGGGCTAGAGAGGAGCTGGACAAGGCGAAGGATGCCATCAGCAAAGTGGATATCAAAATTCCCACAACCACTGGAGATCCGAACAACATGACGCTCCTGGCTGAGGAGGCGCGCAGTCTGGCAGAGAaGCATAAGACAGATGCAGATCAGATTGAGAAGATTGCGAAAGACGCTAACGACACTTCGACTAAAGCCTACAACCTGCTGATGAAGACGCTGGACAGCGAGGACAAGATCAACAAGGACATTGATGACCTGAACAAGAAGTACAACGAGGCCAAGGATCTGGCGAAGAACCTGGAGAAACAGGCCACTAAAGTACGAGctgaagcagaagaagcagGAGACAAGGCTATGAAGATCTACGCTAACCTGACCAGCCTGCCTCCATTCGATATCAGATCACTGGAGGATGAagccaataaaataaagaaggaGGCATCGGACCTGGATAAGCTTATCGATAAAACCGAGAGGGAATACAACGATCTAAGAGAAGACttgagaggaaaagaaaacgaTGTGCGCAGACTGCTGGAGAAGGGAAAGACTGAGCAGCAGACAGCGGATCAGTTGCTGGCACGGGCCGATGCAGCCAAGGCCCTGGCAGAGGAGGCAGCAAAGAAAGGCCTGTCCACATACCAGGAGGCGAAGGACATTCTCAACAACCTCCGAGACTTCGATAAGAGAGTGAACGACAACAAGACCACAGCGGAGGAGGCTTTGAAACGCATCCCACAAATCAACGCGACAATCAACGCAGCCAGTGAGAAGACTCGTCAGGCCGAGACGGCCCTCGGCAACGCGAGCGCCGACGCTAAAGAGGCCAAATCCAAAGCAGAGGAAGCTGAGAAAATCGCCAGCAATGTCCAGAAGGGTTCGGCTAAAACCAAAGCCGAAGCAGAAAAGGCCTTTGGTGACACGATGAAGCTGGACGACGAGGTGAAGGACATGATGAAGCAGCTGGCAAACGCAGAGAACGAgctggagaagaagaaagaagaggcAATGCAGGACATGATGATGGCTTCTATGGCATCAGACAACGCGAAGGAAGCAGAAGAAAACGCACGCAAAGCCAAAAACTCCGTCCGCACTGTTCTCGACGCAATCGCTGACTTACTCGGCCAGCTAGGCAACATTGACAAGGTGGATCTGAGTAAGCTGGACCAGATCGACAGATCTCTGAAGGAGGCCAAGGAGAAAATGGCAGGCAGCGACTTGGACAGGAAGCTGAAGGAGCTGAATGACGTGGCCAAGAGCCAGGAGGATATGATCACCGATTACGACCGGCAGATCCGCGAGATCCGTTCCGACATCGCCAACCTCAACGACATCAAGAACACTCTGCCGAACGGCTGCTTCAACACGCCGTCCCTCGAGCGGCCTTAacctctcatcctctcatcctctcatccctcCCTCTCCGCCCCTTCCTGTCTCTACTACACCTGTCGCCATCTAACATTTGGGGCAAGATGCCATCTTTTAccaaaatctctctcttttttttttttttttttttttgtttgttttagctgTGTTTTCTTCTCCATCAGTGAAGCCACATTTTTATCAAATCCGACAATTCACAGACAATAGCAGCTTTTTACTACCGCATATGCAATCATACTGAAAAGACAGGCTTGGAGAGGCGGCTTCTCGAGTTGTGTGACCGCACCATCTCCAGAACTTTTATTTCCTCCTCCATCCTGCCTTCAATCCCAGTGAAGCAGTCTCATCAGTTTGCTTGGAGAAGggtgtgatatttttttgttataactTTTTTAAGCTACTATCCAGCACATTACTTTATAACTCCAACTATTTACCATTGGTTCAGAAAACGGACAGTGAAGGAATCTTAGTTGCTGTTTTCTTTGtaatctgcctctctctctctctctctctctctctctctctccgcctgTGTGTGCGCTTTCACAAAGCTATAGACACCAGCTATCTGTGGCTGTGCAGAGAGAGCtagcaacacacactacagtacagtattCAGCTCGTCTCATCTTGTCTCATGAGCGTAACTGCAAACAGTGATGCACAGAAGCCGTGTAGATTCAGACTTCATATCCCGTTCACATTCAGCTCAGTGGTCTAAACACATTTCATGTAGTCATTCTAACGCTACACCGTCGTCATCTTCTATAAAAGCTGCTGCTTCCTTACAGGTGTACTGCAAATCACAcgttcacatttttattttcaaggcAAAATTTCAACACTATGCAACTTTGTACATTTGCGCAGCGAGACTTATCTGATACACTGGTGCtaataattatttcaaatgttatatttttgtgtgaatgttttttttaattattattattatgatatagagtgaggattttttttttttttttttttgtgtaaatatattcTTAAATGTTTCAGGAATGGCTGATTTTTGAAACTCCATCACCACCCAGCCAGCTGTAGGTTATTTCACAAGAGAAAATCAGCTAAAATCTCCACCTCCataatatataaatctatatatatatcaagtTCTGTGGTATAATATGCTTGCTTGTATACATGGCTAATTTTTTGTTGCCTCATAGCGCtgccatttattttaattgtgtttaattcTCAGCGGGtggttaattaataaataaaaaaagatataatgCTTTTGTAAGAAGAACACTCCCTTAACTAAAACTGCCTAAACACGTACAAGATGGCTAACATTTCAAAAAGTGTTTTGACAGCTAGCTGGTCACGTGACTAGTTCAGCAGATATGATGGTGTCTTGTGCCTTAACTGCTGGAGAAGATCGTCAGCCCACCTACTCCAAgatttatatacttttttttttataaggctGTACTCAGAAAATGTGCACACACTATGCGATTCTTGTTGTCACTTGTTTTGAAGAAGCAGGAAGAGTATTAAGCACTCCGCTACAGATACAGCTTCTCAGAGAAATTATTACtcattttttgtctcatttctgGTCATGAATGGCTTTGACACTCCTACTTTATGTATATTTCCTGGTGAATTTATCCTGAACACTTCTTCGAAACCTCTCGCATTACCACTGTGGACACGAGTGCAACATGTACACAGTTATGTATACAACAGTATTTCTAATTTATAATAGAACAAGTATTTGTTTATGCTGTTCTTcagtatgtgggtgtgtgttgcaCAGTCTTTAAGTTGGTTTTAAGCTCCTGCTTTCCTCTGTTGATCTTCAAggcactcttcacacacaccacacactcgaAAGGGCCTGAGAAACTCCAGCTTGTCACCCATTTGCCTGTTAAATCAAATTATaacatttgaataataaacTGTGGTTATTTCCTGATAACCTGA

Function

symbol description
lamc1 Predicted to be an extracellular matrix structural constituent. Acts upstream of or within several processes, including animal organ development; detection of light stimulus involved in visual perception; and retinal ganglion cell axon guidance. Predicted to be located in extracellular region. Predicted to be active in basement membrane. Is expressed in several structures, including central nervous system; eye; median fin fold; musculature system; and optic cup. Orthologous to human LAMC1 (laminin subunit gamma 1).

NR:

description
laminin subunit gamma-1-like

GO:

id name namespace
GO:0050908 detection of light stimulus involved in visual perception biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0048570 notochord morphogenesis biological_process
GO:0007634 optokinetic behavior biological_process
GO:0007155 cell adhesion biological_process
GO:0005604 basement membrane cellular_component

KEGG:

id description
K05635 LAMC1; laminin, gamma 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936654.2 True 7095 mRNA 0.51 28 31619845 31684467

Neighbor

gene id symbol gene type direction distance location
dhx9 dhx9 coding upstream 9648 31596514 ~ 31610197 (+)
LOC113540625 LOC108267346 coding upstream 25158 31587261 ~ 31594687 (+)
zp3f.2 NA coding upstream 33090 31584100 ~ 31586755 (+)
ap1g2 LOC108267338,LOC108438930,LOC105021476,LOC106569429,LOC100380629 coding upstream 38305 31566281 ~ 31581540 (+)
prmt5 prmt5,LOC107694666,LOC107668985,LOC107558089 coding upstream 59138 31548280 ~ 31560707 (+)
lamc2 LOC108267337 coding downstream 5708 31690175 ~ 31706269 (+)
smg7 smg7,LOC107658366,LOC107563557,LOC107557277 coding downstream 48145 31732612 ~ 31753667 (+)
LOC113540131 NA coding downstream 397452 32081919 ~ 32105291 (+)
LOC117597128 NA coding downstream 632521 32316988 ~ 32319907 (+)
LOC117596959 NA coding downstream 651621 32336088 ~ 32336582 (+)
LOC117597165 NA non-coding upstream 73050 31544698 ~ 31546795 (+)
G74309 psmb5,LOC107668975,LOC106569426,LOC107558100 non-coding upstream 86622 31531453 ~ 31533223 (+)
LOC117597166 NA non-coding upstream 88649 31524103 ~ 31531196 (+)
G74315 NA non-coding upstream 91775 31527856 ~ 31528070 (+)
G74199 NA non-coding upstream 263724 31355554 ~ 31356121 (+)
G74370 NA non-coding downstream 22761 31707228 ~ 31707436 (+)
G74384 NA non-coding downstream 50189 31734656 ~ 31743095 (+)
LOC113540254 NA non-coding downstream 93654 31778121 ~ 31847866 (+)
LOC117597031 NA non-coding downstream 175493 31859960 ~ 31863157 (+)
LOC117597174 NA non-coding downstream 261581 31946048 ~ 31946542 (+)
c4h22orf39 c7h22orf39 other upstream 266701 31351201 ~ 31353144 (+)
spsb4a spsb4a,LOC108267127,LOC108440634,LOC103021520,LOC107706335,LOC107561810,LOC107694659,LOC107583109 other upstream 521916 31061730 ~ 31097929 (+)
G73944 NA other upstream 852713 30746131 ~ 30767132 (+)
uggt1 uggt1,LOC107748935,LOC107683622,LOC107727334 other upstream 1141552 30454757 ~ 30478293 (+)
zgc:153115 LOC108268059 other upstream 1938670 29673514 ~ 29681175 (+)
LOC113540067 NA other downstream 75422 31759889 ~ 31776798 (+)
LOC117597173 NA other downstream 274555 31959022 ~ 32330845 (+)
LOC117597122 NA other downstream 276402 31960869 ~ 31965136 (+)
LOC117596936 NA other downstream 282732 31967199 ~ 31967957 (+)
LOC117597123 NA other downstream 286467 31970934 ~ 31972279 (+)

Expression


Co-expression Network