LOC113540276 (LOC108267420)


Basic Information

Item Value
gene id LOC113540276
gene name LOC108267420
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 13724314 ~ 13738910 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936675.2
CCGCCTGTAGCTGGATGACGCAGAGGTCACGTGTTGTTTGTGCCGCGGTCCATAGAGATGTGTGTACAGAGGGAGTGAGAAGCAGATTGGCAGCGCCGCTAGGATCTACCGATAATAGAAACGGGTAATGTGGTCATGTTGCAGTGGCTTGGCTTGAATTCTTGTCGCGTTGGCTGCGTTTTCCTGAGGCGGCTCAGAGGAGCGCATCATCGGGAGGAATAAATTGCGCCGCTGCTGGAGGAGAACACGACCCCCCTCCCTCCCCAAACAAGAATGGGGTCTCATAGCGCAACACTAAGGCGAAGATAAACTTGACCCAGCGTTTACTAACCAAATGGCGAATCTTGCGAATTATCCAGAAGGCAACGCCGCCTTGCTGATGCTGGAAGTGCAGCAGAGGACTGTCGGAGCTAAAGCAGATTCAAACGGCGGCCCCTCCGGCGGGGATCCCCCTTCCTCCCCGCTGCACGGCGGCGGCGCTGCTCGCTTCCATCAACACCAGCAGGCTGCGCCGCCAAGCGCACATCATCAACCGCAggaccaccaccaccaccaccaacaacagcaacaacaacattttgATCACGAAAACTATCAACAGTCTCCAGCGCGAAAAAGCCTCTTGTCTTCTCTTAAACCAGCACATGAGGACTCCGCTGCTTCTGCTGCTACGAGCCACACACAGGCTACCTCATCTGCCACTGCCATGGCTGTTAACACCGGCGCCGCTGCTGCAGACGGGCTGGACGACATTAGGAAGTGCGGCTAcctgagaaaacagaaacacGGCCATAAGAGGTTTTTCGTCTTACGCTCGGCGAGCCGTTCAGGGCCGAGCCGACTGGAGTACTATGACAGTGAAAAGAAGTTCCGTAGTAGCCTTCGCTCTGCCGCCgctgccgccgccgccgccgccgccgcctcGTCTACCGGTGCTGCTGCAGCGAGCGCTTCTCCTCCCAAACGCGTGATTTATCTCTACCAGTGTTTCACTGTAAACAAAAGGGCGGATTCAAAGAACAAACACCTCATAGCTCTCTATACCAAGGACGAATACTTTGCGATTGTGGCCGAAAATGAGCAAGAGCAAGAAGACTGGTACTTGGCGCTCAGCGACCTGATGAGTGAAGGCAAAAAAGGCCACACGGAGGCCGACGAGCTCGACGACGGCTACGGTACAGTAACGCCAGGCACCGTCTTCAAAGAGGTCTGGCAGGTAAACGTGAAACCCAAGGGCCTAGGGCAGACTAAGAATCTCACAGGTGTGTACAGACTGTGCCTCTCTTCTAAAACCATCCACCTAGTAAAACTGAACTCTGAGACCCCATGTGTAAACTTGCAGCTGATGAACATCAGACGCTGTGGCCACTCTGAGAGCTTCTTCTTTATAGAGGTTGGGCGCTCCTCTTCAATCGGTCCTGGAGAGTTATGGATGCAGGTGGATGATTCTGTGGTGGCTCAGAGTATGCATGAGACCATTTTAGACACCATGAAGGCTCTAAAGGCCTACGCCGAGTTCAGGCCGAGGAGTAAAAGTCAGTCGTCTGGCTCTAACCCTATGGCTTTCATGACCACACGTCGCCACCTGGGAAACCTCCCACCCAGCCAGACAGGTCTGCAGAGGCGGTCTCGGGCTGAGTCTGTGGTTGGCACCCCACCTAGCAGTAAGAGCAGTGGTGCAAGTGGATACAGGTTTCGCACCTCCAGTGAAGGTGAGGGCACCATGAACCGCCCATTTCGATCAGTCACAGGCAGCCTGATCCACCTCAATACAGCCCGTGCCAACTTGGGTAGACAGGAGAGCAGTGGTGGAATGGGGAGCCGATACGTACGAGCCCCGCCAGGTGCCACCTACCATGCACGGTCTGCCTCACTTCCAGTGTCTCACTTCCCCTCCACCACCAGTCCCGTCAGTATGTCCAGTAGCAGCGGCCATGGTTCAGTCACTGATACCAACACCCGGCCTTCCAGCGCTTCCGTCTGCGGTTCGCCCAGTGATGGAGGCTTCAACTCCTCTGATGAATACGGCTCCAGCCCCGGAGACTTCCGCTACTTCAGAGTACGCAGCAACACACCTGACTCATTGAGCAACACGCCACCCATCCGGGAGGAGCACTGTCTGAGTGACTACATGGCTATGGGCTGGAGCCGAGACATGTTCACTGGGAGTGCCGGGGAGGTTTCCCGTGACGAAACTGCTGATGAAGATTCACGGTCATTTAGGAGGCGCACTCCTTCCTTTTCCAGACAGGTGGGAGCCGGCAGTGCAGGCGGAGTAGCTGTTTACCAGAAGATGACTCAGACCAACTTCTCGCTGGACGAGGCTGTAGCTGATGGAAGCTTTCTGGGCAGCAATAGCCAGGTTGCCTCCATCTCTTCATCACTTCGTTCTGATTACAGCTCCAGCTCTGAACACAGCCAGGACCACCCCCCTGCACTGCGGGCTGCTGATTCTTTCAAAGACGATGGATACATGCCCATGATGGCTGGTGTGGTACCCTCTGCACGAGACACAGATTACATGCCTATGCAACCCAGTCCTCTTGTCTGTGCCTCTCCACAAATCCAGAGCATGGCCTCTCCTCCCTCTCAGCACATGGACTCACAAGGCTACATGATGATGCTCCCAGGTGGGAATGGGGGTGCAGACCCCCCAGTGCCAGGCAGCCCCCACATTAGCTGCAGGGGCCTTAGTCAGAGAGGTAATGAGCGTCCTGAAAATGGAGAATACATGGATATGTCTCAGAGTAGGCCCATGGCAGGCAGGCGAAAATTCTCTAATGACAGTTACTACACATTGACTGCTCCTGAGATACCCAAATCCCACAGTTCATATTTCTCCCTACCACGTTCATACAAAACCCCAGCAAAACATCGGCGTGAGCATGATGAATACGTTCCCATGAGTTCACCTGCCAAACCTGTCTACATCTCTCCGAGTACCACACCTGAGCATAATGGCTGTAGCGATATGGATTGCCATTCTTCACGTCCAAATCTCCTCCCCCTTAGCCGACGCAGTTTCCATGGGTCTTTACAGGCGAGTGAGACGGTGGAATGTCCCTCCAGTCCTGGAGAGTACATTAACATTGAGTTTGGTGACCAGGCCTCATACTCGCTCACTACAGAGGACACTCTCACCAGCCAAAGCACCCACCGGCAGGACCGGCACTCTCCCCTTCCCCAGGACTACATGAGTGTGGAAGTGGATGGCCTTCCACCCAAAAGTCAGTCTTCACGTTCATCACTGGTGGCCCCTTGGAACCTCCCTACTTACATTCGTACCAGTGGTGGTGGAGTCACTTTGGGACAGTCGGATGACTACACAGAGATGAGCAGTGGTCGGCGTGAGGAGCGTAAAAGCCCCACAACTATGTTGCAACACCTTAGCATTTGTGAGCAGAGGTATTCAAGCTCTAGCGCACCCGTTGAGCCAAAGGTCATACGTGCAGACCCCCAGGGCAGGCGGAGACACAGCTCTGAGACTTTCATCACATCTACGGAAGTGACAGGAGCGACTGGCCTGGACAACAGCGCCTCAGTGCCTAGCACTGTTCCTCAGGTGGGGGATAACAAGTGGCAGAGCTCATCATCCTTCGACAGCACATGGATGTGTGTGGAGAACAAAGCAGCAGGTGACAAAGAGGAAGCACCGGGCCTCTCCTCAGACCGAGCTGAAGCAAGTGCCTCTTCTGTGAGAACCAGAAGGACTCTATCTGTGGAACACCAAAATGGCCTCAACTACATTGCCCTGGATCTGAGAGAGGACCAAGGGACTGAGAGTGCCAGCACTGAACCCCAAATGCCGGCCTCTGGCGTGCTCCTCCCAGAAAATGGGGAATACGCCAGCATAGATTTCACTAAATCTGAGCGGATCACTGCGGCTTCTAAAGAGTAAAGTTGAGCTACGTGGCTGCTTTTTGGAGAATGGAGGAGCCACCGAGCCACTTCCGGCCCGTCACACACCCTGCAGAAACGACCCCAGGGACCTCCACTTTGTTTTCTCGTCATGTCCTCGCTTTAAATTTCGCCTCTTTTAAGAGCGCATTATCTTCTGGGTTGGTGTTGTTTGAAGTCAGCGCTTTAATATTTTGAtcgttttttaatgttttactttttaattgtGCATAAAAGGGTTTTGCTCACTGACATGCAGAGATCCCAATGCTGTTGTCAGCAGTCTCATCCACACAGGTACACAGTGTTTACTGATTAAACATTACTGATTAAAATGCGGTCGTTTTAA

Function

NR:

description
PREDICTED: insulin receptor substrate 2-B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936675.2 True 4246 mRNA 0.54 2 13724314 13738910

Neighbor

gene id symbol gene type direction distance location
rasl11a rasl11a,LOC108412587,LOC107596470,LOC106577879,LOC107707904,LOC107684967 coding upstream 24624 13692777 ~ 13699690 (+)
arhgap36 LOC108267422,LOC108412584,LOC107702308,LOC107596505 coding upstream 39715 13647181 ~ 13684599 (+)
nhsl2 nhsl2 coding upstream 78330 13573634 ~ 13645984 (+)
rps4x rps4x,LOC103480264,LOC107373838 coding upstream 154715 13564728 ~ 13569599 (+)
hdac8 hdac8,LOC107707919,LOC107711573,LOC107695331 coding upstream 170366 13533817 ~ 13553948 (+)
col4a6 col4a6,LOC108267418 coding downstream 59270 13798180 ~ 13880674 (+)
ankrd46b ankrd46,ankrd46b,LOC108428588 coding downstream 143402 13882312 ~ 13889584 (+)
LOC113539767 t185a,tmem185a coding downstream 152203 13891113 ~ 13898505 (+)
m1ap m1ap coding downstream 235086 13973996 ~ 14016125 (+)
nagk nagk,LOC107697250 coding downstream 296297 14035207 ~ 14039607 (+)
G63976 NA non-coding upstream 151481 13570002 ~ 13572833 (+)
G63936 NA non-coding upstream 219595 13504460 ~ 13504719 (+)
G63898 NA non-coding upstream 256588 13459362 ~ 13467726 (+)
G63901 NA non-coding upstream 306873 13417221 ~ 13417441 (+)
G63889 NA non-coding upstream 336360 13387598 ~ 13387954 (+)
G64025 NA non-coding downstream 16634 13755544 ~ 13759751 (+)
G64049 NA non-coding downstream 164531 13903441 ~ 13909459 (+)
G64102 NA non-coding downstream 273188 14012098 ~ 14012315 (+)
G64103 NA non-coding downstream 274309 14013219 ~ 14013418 (+)
G64105 NA non-coding downstream 278376 14017286 ~ 14017669 (+)
gc2 LOC108267421,LOC108412585 other upstream 4860 13705417 ~ 13719454 (+)
cited1 cited1 other upstream 162048 13558623 ~ 13562266 (+)
LOC113539889 LOC108267838 other upstream 249277 13468552 ~ 13475037 (+)
G63903 NA other upstream 305618 13418377 ~ 13418696 (+)
slc16a13 slc16a13 other upstream 438480 13275462 ~ 13285834 (+)
brms1 brms1,LOC108268191,LOC108428539,LOC107661966,LOC107721670,LOC107661087,LOC105894187,LOC107583285 other downstream 516834 14255744 ~ 14269340 (+)
zgc:194930 LOC108268002 other downstream 893120 14632030 ~ 14658936 (+)
LOC113540079 sh3tc1 other downstream 2284284 16023194 ~ 16039984 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other downstream 2571303 16310213 ~ 16319166 (+)
LOC113540582 cyb5d1,LOC108267266,LOC108434590,LOC107738084,LOC107683579,LOC106577649,LOC105907155,LOC107595290,LOC107707052,LOC107702060 other downstream 2629046 16367956 ~ 16370957 (+)

Expression


Co-expression Network