plxdc2 (plxdc2,LOC107724400,LOC107659453,LOC107598695,LOC107684879)


Basic Information

Item Value
gene id plxdc2
gene name plxdc2,LOC107724400,LOC107659453,LOC107598695,LOC107684879
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 22045016 ~ 22163581 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936701.2
tccTTCTGCATCCGAGCAGCAGTCAGTCGTGTGCGCGAGGACTGTTATTTGATGACACTACTGTATTTAAGTGTGTCTCGTTTCTCCGTTTTCAGGACCCGTGAACtcagttctcacacacacacacacacacacacacacacagacagacagacaagcgCGCGCACATCCCGATCCACTTGAGCGGTGTGAGTTGTGGGAGCAGCGCGTGGCGGAGAGACGAGAGCGCGAGGAGGAGCTGACAGTAACACCGCGGCTCCAGTGAAACGCCTGCTTCAGTCCTGCCTGTGCTCGTGTGCAGAGGAGCAGAGGAGCAGAGCACATCACATCAGCCGCACATCTTCTCGTCATGGCGGGGGCGAAGGCGCTCGACCTCATGCTTGGAGTTGTGTTACTTCTGCATGCTCTTGGAAGTCTGTTCCAAATCACCCGCGGGGAATTAACCACAGAGGGAGTTTCCTATTCTGTGCTTCAGGGGCCGGGGCAAGACAATGACATCACAGTGGAAGTACTCAGGAAGAGACGGTGGCTGTCTGAGCCAAGAATGACCAGCAACAAAGCCAGTCAGGAGACTTCAGAGGCGGAGTCACAGGATGTACCTGGACCACTGGCAGATACTGATGCAGATAACAGCTCCCAGATAACCgagGACACAGATCACAACTATTACACATCAAAGACCTACGGCCCTAACGATCCCATGAGCAAAGAATTATGGGTGAACATTGATCAGATGGACAAGGAGAAAGTGAAGATCCATGGAAtcctgtccaacacacacagacaagcagcaCGGGTCAACCTGTCGTTTGATTTCCCCTTTTATGGACATTTTCTCAGGGAGATCACTGTGGCAACTGGCGGGTTCATTTACACAGGAGATGTGGTACACAGAATGCTGACAGCCACACAGTACATCGCCCCCCTCATGGCGAACTTCGACCCCAGTCTGTCCCGAAACTCGactgtcatttattttgacAATGgCACTGCACTGGTGGTTCAGTGGGATCACGTTCACCTCCAGGACTCGTTTAATCTGGGCAGCTTCACATTTCAGGCCACACTACACAGTGATGGCAGAATTATCTTCGCCTACAAGGAGGTTCCTATTCAGATCGGACAGATCAGCTCTGTTAACCATCCAGTGAAGGTGGGCCTCTCTGACGCCTTCGTGGTGGTTCACAGGATTCAACAAATTCCTAatgttcGGAGGAAGACCATCTATGAGTATCACCGTGTGGAGTTACTCAAGACCAAAATCACAAACAGCACAGCTGTGGAAATGATGCCACTCCCTACCTGTCTGCAGTTTAGAAGCTGTTCTGCCTGCATCGCTGCCGAGATCAACTTCAACTGCAGCTGGTGTCACCGACTTAACAGATGCTCTAGTGGTTTTGACCGCCATCGGCAGGACTGGGTAGACAACAGCTGCCcagatgagACAAAGGACAACATGTGCGACATCATCAAAACCACTCAGTTTGAATCATCTACCACTGCATCAGTGACCAAGACATCCACGAGGAACAGAGCCATTACAGAGACTGATTCCACCCAGTCTACATCACATCCACCCACCAGCATCCCTACAGAAGATGACACCAAGATTGCCCTTCATCTCAAAGACAATAGAGCGGCAGCGGCACACAGCATGGCGGAGAGGGAATCAACCAGCAACAAACACAACCTTCACACAGGCCTGATCCTGGCCATGCTCATGCTGATGTTGGTCATAGTGGCTGTGGTGCTGGTGACTGTTTACATCTACCACCACCCCAGCTCAGCCGCCAGCCTCTTCTTCAtcgagAGACGACCAAGCCGGTGGCCTGCCATGAAGTTCCGCCGTGGTTCAGGGTATCCTGCGTACGCCGAGGTGGAGCCTGTCGGCCAGGAGAAAGAGGGCTTCATCGAGGCTGAGCAGTGCTGAGgtcctgacctttgaccttgtgCCCCCATACACTGCCCTGCTCCCTCTTCATACACACTCATCCATGTAAGAACTGAAATGTCCCGCTTTCATCAACCGTCCAAATAGGAAACAACAGTGTGGATATAAAATCATTCCTGCAAGTAAGAGAAGTATCTGATGGCTGATGATTAGTAGCACAGAATCAGATTCCTACAGCTTGATGATCAAATGAGCCATGAGAGAACTGACAAAGGTCTGAATCTGGATCATCTCTAAACTGCACGCTGAGCGCTAGACCTGATCTGGAACCAGCACCCAAAGCCTCGATCCCACTGGAGCAGATTTGGATTCAAATTCAATGCATCTTTTTCCTTTCACCACAGAGGAATTTCTTTTtgaaaactctttaaaaatCAGAGCTGTGCATCTCCGGTTTATGGTTTAGGAGAATTTATTTAGGTCTTTATATATCTTTGCAACGGGTTTTAGGGTTTTTCTTTTGACCATATTGctttgtttcagttttaatttgatGTTTTGGAGGAATTTAGTGCAGATTGTTGCTTGAAATGCAGTTATACTCATATAAAATCATtcatgctttcattttctgctACAATTGGGAAACGTTTGCATGCTGTATCCAACAGTGGTGCTCAACTTTTCCATGCCTATGACTCATACTTAAATTTTTTGcacaaatcttttttaaatgcacatatgtttttggtttttttcaatttgtttggattttattcTTGGGTTACTAATGCAAAGTTACAAGACAGGCGCTTGTGGATCTTTGTCTCCTGTATGTGTCAAAATGGAGGTGGGACAGTGTTTGGATGAATTATCTTGTTtgttgatttatatttttgattggTTTCAAatggttttgtcttttttcctgtGACACACTGAttagagactccttccttccTACTGCAAATGTTCATTTTGCTAGTTAGAATTGATTCCTATTCAATTGCTTCAACACGGTACATGCAATAGACATGCCAGTGGACGTGACCACATAAATGAGAATATATATTTGATATCTGTCCATATGTAATTACttatataaatctataagaataacagtgtttaaatgttatCAGCTGTGTTCTCATGATGACATGAATGGAGTgggtttttttaatggaatgaAGACTATAAAATCCTTCAGGTTCATCCTGCGATTCATGCATTCTCCATATAGAATCAGAGAAATAGATTTCTATTAATGTAGCATAGACACAAATAAATACTAAACCctagtctttctttctttcagttaaTTCAATACGAGTGTGTTATTGCCGTTAAACTTTTAAGACTTGGTTCTCACTCTACAGTCGTATCAGTGGCTATAATCACAGCACTTCTTAATTTTTCTTGTAGCAAGTGTTTTACTGTTTTCAAAACCAAAGACCCATATCACTGCATCACAACTACTGTTCCTTATGTTCTTCCctctcattgtctctctttctttctctcacacacatacacacacatgcacacacacacacatgcacacagaggcACGGATTTAGACAAAAGGATAAGGCTTCTGAAACTACACAATAGACTCAGGTCCAGTTAGAAACATGATCGTGTGAATTACAGAGGAAACCAGAAGGACAAATAACAAAGATAACAATACATTACAGATGCAAAAATCCTCCATGGTTGCTCGTTTTACACAACCAATGCAGATGATAGTATATAAGAACCataataattaagtaaaaaatatttataagaatGCAGGAAAGACAACTAGGCCTTCTTTTAGTTTGTTGgggtttttgcttttgttttggtttaagtttttttttctgtatcacTGGACTCATTTGACGAATTTCATCCagcctgagagtgtgtgtgtgtgtgtgattcttaAAGTGAATGAATGTTTGACAGATGAGGAGAATGTTACATTTAACAGCAGGCTGTGCTCTCAAAGTCAGGATTTTTCACAATAACAGTCCTCTGAGAGCTGCTGGCCTAGTCGATGCTGTAACTCTGTGTGCTCCTCTATAACTACTGTCATTTTGATtgcattttaaatcaataaagttGTTTAAACAAG
>XM_034303946.1
ctccTTCTGCATCCGAGCAGCAGTCAGTCGTGTGCGCGAGGACTGTTATTTGATGACACTACTGTATTTAAGTGTGTCTCGTTTCTCCGTTTTCAGGACCCGTGAACtcagttctcacacacacacacacacacacacacacacagacagacagacaagcgCGCGCACATCCCGATCCACTTGAGCGGTGTGAGTTGTGGGAGCAGCGCGTGGCGGAGAGACGAGAGCGCGAGGAGGAGCTGACAGTAACACCGCGGCTCCAGTGAAACGCCTGCTTCAGTCCTGCCTGTGCTCGTGTGCAGAGGAGCAGAGGAGCAGAGCACATCACATCAGCCGCACATCTTCTCGTCATGGCGGGGGCGAAGGCGCTCGACCTCATGCTTGGAGTTGTGTTACTTCTGCATGCTCTTGGAAGTCTGTTCCAAATCACCCGCGGGGAATTAACCACAGAGGGAGTTTCCTATTCTGTGCTTCAGGGGCCGGGGCAAGACAATGACATCACAGTGGAAGTACTCAGGAAGAGACGGTGGCTGTCTGAGCCAAGAATGACCAGCAACAAAGCCAGTCAGGAGACTTCAGAGGCGGAGTCACAGGATGTACCTGGACCACTGGCAGATACTGATGCAGATAACAGCTCCCAGATAACCgagGACACAGATCACAACTATTACACATCAAAGACCTACGGCCCTAACGATCCCATGAGCAAAGAATTATGGGTGAACATTGATCAGATGGACAAGGAGAAAGTGAAGATCCATGGAAtcctgtccaacacacacagacaagcagcaCGGGTCAACCTGTCGTTTGATTTCCCCTTTTATGGACATTTTCTCAGGGAGATCACTGTGGCAACTGGCGGGTTCATTTACACAGGAGATGTGGTACACAGAATGCTGACAGCCACACAGTACATCGCCCCCCTCATGGCGAACTTCGACCCCAGTCTGTCCCGAAACTCGactgtcatttattttgacAATGgCACTGCACTGGTGGTTCAGTGGGATCACGTTCACCTCCAGGACTCGTTTAATCTGGGCAGCTTCACATTTCAGGCCACACTACACAGTGATGGCAGAATTATCTTCGCCTACAAGGAGGTTCCTATTCAGATCGGACAGATCAGCTCTGTTAACCATCCAGTGAAGGTGGGCCTCTCTGACGCCTTCGTGGTGGTTCACAGGATTCAACAAATTCCTAatgttcGGAGGAAGACCATCTATGAGTATCACCGTGTGGAGTTACTCAAGACCAAAATCACAAACAGCACAGCTGTGGAAATGATGCCACTCCCTACCTGTCTGCAGTTTAGAAGCTGTTCTGCCTGCATCGCTGCCGAGATCAACTTCAACTGCAGCTGGTGTCACCGACTTAACAGATGCTCTAGTGGTTTTGACCGCCATCGGCAGGACTGGGTAGACAACAGCTGCCcagatgagACAAAGGACAACATGTGCGACATCATCAAAACCACTCAGTTTGAATCATCTACCACTGCATCAGTGACCAAGACATCCACGAGGAACAGAGCCATTACAGAGACTGATTCCACCCAGTCTACATCACATCCACCCACCAGCATCCCTACAGAAGCGGCAGCGGCACACAGCATGGCGGAGAGGGAATCAACCAGCAACAAACACAACCTTCACACAGGCCTGATCCTGGCCATGCTCATGCTGATGTTGGTCATAGTGGCTGTGGTGCTGGTGACTGTTTACATCTACCACCACCCCAGCTCAGCCGCCAGCCTCTTCTTCAtcgagAGACGACCAAGCCGGTGGCCTGCCATGAAGTTCCGCCGTGGTTCAGGGTATCCTGCGTACGCCGAGGTGGAGCCTGTCGGCCAGGAGAAAGAGGGCTTCATCGAGGCTGAGCAGTGCTGAGgtcctgacctttgaccttgtgCCCCCATACACTGCCCTGCTCCCTCTTCATACACACTCATCCATGTAAGAACTGAAATGTCCCGCTTTCATCAACCGTCCAAATAGGAAACAACAGTGTGGATATAAAATCATTCCTGCAAGTAAGAGAAGTATCTGATGGCTGATGATTAGTAGCACAGAATCAGATTCCTACAGCTTGATGATCAAATGAGCCATGAGAGAACTGACAAAGGTCTGAATCTGGATCATCTCTAAACTGCACGCTGAGCGCTAGACCTGATCTGGAACCAGCACCCAAAGCCTCGATCCCACTGGAGCAGATTTGGATTCAAATTCAATGCATCTTTTTCCTTTCACCACAGAGGAATTTCTTTTtgaaaactctttaaaaatCAGAGCTGTGCATCTCCGGTTTATGGTTTAGGAGAATTTATTTAGGTCTTTATATATCTTTGCAACGGGTTTTAGGGTTTTTCTTTTGACCATATTGctttgtttcagttttaatttgatGTTTTGGAGGAATTTAGTGCAGATTGTTGCTTGAAATGCAGTTATACTCATATAAAATCATtcatgctttcattttctgctACAATTGGGAAACGTTTGCATGCTGTATCCAACAGTGGTGCTCAACTTTTCCATGCCTATGACTCATACTTAAATTTTTTGcacaaatcttttttaaatgcacatatgtttttggtttttttcaatttgtttggattttattcTTGGGTTACTAATGCAAAGTTACAAGACAGGCGCTTGTGGATCTTTGTCTCCTGTATGTGTCAAAATGGAGGTGGGACAGTGTTTGGATGAATTATCTTGTTtgttgatttatatttttgattggTTTCAAatggttttgtcttttttcctgtGACACACTGAttagagactccttccttccTACTGCAAATGTTCATTTTGCTAGTTAGAATTGATTCCTATTCAATTGCTTCAACACGGTACATGCAATAGACATGCCAGTGGACGTGACCACATAAATGAGAATATATATTTGATATCTGTCCATATGTAATTACttatataaatctataagaataacagtgtttaaatgttatCAGCTGTGTTCTCATGATGACATGAATGGAGTgggtttttttaatggaatgaAGACTATAAAATCCTTCAGGTTCATCCTGCGATTCATGCATTCTCCATATAGAATCAGAGAAATAGATTTCTATTAATGTAGCATAGACACAAATAAATACTAAACCctagtctttctttctttcagttaaTTCAATACGAGTGTGTTATTGCCGTTAAACTTTTAAGACTTGGTTCTCACTCTACAGTCGTATCAGTGGCTATAATCACAGCACTTCTTAATTTTTCTTGTAGCAAGTGTTTTACTGTTTTCAAAACCAAAGACCCATATCACTGCATCACAACTACTGTTCCTTATGTTCTTCCctctcattgtctctctttctttctctcacacacatacacacacatgcacacacacacacatgcacacagaggcACGGATTTAGACAAAAGGATAAGGCTTCTGAAACTACACAATAGACTCAGGTCCAGTTAGAAACATGATCGTGTGAATTACAGAGGAAACCAGAAGGACAAATAACAAAGATAACAATACATTACAGATGCAAAAATCCTCCATGGTTGCTCGTTTTACACAACCAATGCAGATGATAGTATATAAGAACCataataattaagtaaaaaatatttataagaatGCAGGAAAGACAACTAGGCCTTCTTTTAGTTTGTTGgggtttttgcttttgttttggtttaagtttttttttctgtatcacTGGACTCATTTGACGAATTTCATCCagcctgagagtgtgtgtgtgtgtgtgattcttaAAGTGAATGAATGTTTGACAGATGAGGAGAATGTTACATTTAACAGCAGGCTGTGCTCTCAAAGTCAGGATTTTTCACAATAACAGTCCTCTGAGAGCTGCTGGCCTAGTCGATGCTGTAACTCTGTGTGCTCCTCTATAACTACTGTCATTTTGATtgcattttaaatcaataaagttGTTTAAACAAG

Function

symbol description
plxdc2 Predicted to be integral component of membrane.

NR:

description
PREDICTED: plexin domain-containing protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936701.2 True 4010 mRNA 0.44 14 22045017 22163581
XM_034303946.1 False 3972 mRNA 0.44 13 22045016 22163581

Neighbor

gene id symbol gene type direction distance location
malrd1 malrd1 coding upstream 9455 21974743 ~ 22035561 (+)
arl8 arl5b,LOC103034648,LOC100708858,LOC107591025,LOC103373092,LOC107723111 coding upstream 99428 21934492 ~ 21945588 (+)
cacnb2a cacnb2,cacb2 coding upstream 130784 21849641 ~ 21914232 (+)
LOC113540130 slc39a12 coding upstream 201132 21829024 ~ 21843884 (+)
mrc1a mrc1 coding upstream 216177 21807724 ~ 21828839 (+)
nfx1 nfx1,LOC108268165 coding downstream 6751 22170332 ~ 22184685 (+)
smarcd3b smarcd3,smarcd3b,LOC108268163,LOC108442951,LOC103047704,LOC106578675 coding downstream 27105 22190686 ~ 22239624 (+)
abcf2b abcf2b,LOC108268161,LOC108440639,LOC103022164,LOC107684499 coding downstream 96411 22259992 ~ 22268392 (+)
prkdc prkdc,LOC107598697,LOC103399435 coding downstream 108894 22272475 ~ 22317291 (+)
ncf2 ncf2 coding downstream 165687 22329268 ~ 22338376 (+)
G68687 NA non-coding upstream 127240 21914806 ~ 21917776 (+)
G68621 NA non-coding upstream 295697 21732946 ~ 21749319 (+)
G68523 NA non-coding upstream 557528 21486974 ~ 21487488 (+)
G68435 NA non-coding upstream 728501 21316255 ~ 21316515 (+)
G68313 NA non-coding upstream 810758 21234025 ~ 21234258 (+)
G68947 NA non-coding downstream 81007 22244588 ~ 22244825 (+)
G68955 NA non-coding downstream 219513 22383094 ~ 22387745 (+)
G68954 scrib non-coding downstream 229258 22392839 ~ 22397101 (+)
G68999 NA non-coding downstream 363747 22527328 ~ 22527556 (+)
LOC113540593 NA non-coding downstream 763229 22926810 ~ 22938741 (+)
LOC113540377 NA other upstream 282715 21752416 ~ 21762301 (+)
mettl4 mettl4 other upstream 404859 21629076 ~ 21640157 (+)
plag1 plag1,LOC107570635 other upstream 721049 21314218 ~ 21323967 (+)
G68232 LOC108267516 other upstream 1011263 21020258 ~ 21033753 (+)
fcer1g LOC100305060 other upstream 1890239 20147795 ~ 20154777 (+)
LOC113540463 NA other downstream 486229 22649810 ~ 22652447 (+)
G69509 LOC108267411 other downstream 1154923 23318504 ~ 23320343 (+)
klhl18 klhl18,LOC107657445,LOC107701005,LOC107733883,LOC107730797 other downstream 1864525 24028106 ~ 24106223 (+)
G69971 NA other downstream 1945214 24108795 ~ 24109889 (+)
kif2c kif2c other downstream 2695445 24859026 ~ 24871263 (+)

Expression


Co-expression Network