cop1 (rfwd2,LOC107722073,LOC107726924)


Basic Information

Item Value
gene id cop1
gene name rfwd2,LOC107722073,LOC107726924
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 25643402 ~ 25664410 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936708.2
TCTGCGGTGGattgaaatgtggaaaaaaaaaaaaccttctgagTGTCAACAAATATCGTTGTAGTAACAAATGCTCGAGTTTTGTTGCGTCGTTCAAGTTcgttaagcttttaatgatagATCTCCTCTGAAcgtgttaaacaaacaaaagcgcTATTTGGTGGTAACAGCCAATGTGATAACTCTTAGCTCAGTCTTAGTGCGTTAACTGGCTAAAACATAaagcagctagctagcattatccGCCCGGATGCGGTGAAAGCGCCTGAGGAAGCTAACGGCAGCGCAGCTTTTTGCTACGGACGGGCCTCGAAAAGGAGTTCAGAGGCGTCTTGAAAGATGTCAGGCTGtcggcagcagcagcagcagcagcagcagcagtccgGTGGTGCTTTGGGATCTGTACCGGGAACGAGCTCTGGGAGCACGGCGACTGCTAACATTGCTAATAACGGGGGGAGCAGCGCTAATGCTAATGGCAATGGCATTTCTTTGCGAAGTCTCGGATCTGGGAGCGAGGCGCAGCTACTGGGTGCACAGAGACCCAGTTTATCCGGCGCCAACCACAGCAAGAAAAGACCTCTATATAACGGTCTTATTAATCCATATGAAGATAAgagtaatgattttgtgtgTCCCATATGTTTTGACATGATAGAGGAAGCTCATATGACTAAATGTGGTCACAGTTTCTGTTACAAATGTATACGGCGGAGTTTAGAGGACAGCAACAGGTGCCCGAAGTGTAATTACATTATTGACAATGTGGATCAGCTGTACCCCAACTTCTTAGTTAATGAGCTGATCCTCAAGCAGAAACAGAGATCCGAAGAGAAGCGACTAAAACGGGACCACCCTAATGGAACCAAATGGCAGTTTTTCCAAGATGTTCTTGGCACAGACCAGGAGCATCTGGATTTAGCAAATGTCAACTACATGTTGGAACTGCTGGTGCAGAAAAAGAAGCAGCTTGAAGCGGAATCGCAAGCAGCTCAGCGTCAAATCCTAATGGAGTTCTTGAAAGAAGCTAGGAGGAATAAGAGAGAGCAACTAGAGCAATTACAGAAAGAACTGAACTTTTTGGAAGAGGACATAAAGAGTGTTCAGGATATGAGTGGGCTGTACTCACCAGTTATTGATATGGACCCCAATTTGGACAGCACTGTTCCCCAGTTTGGAGATGCACACTCTCCTGCACCCAGcagtaGCATCATTGAACCCACAGAGTATATCCAGCCTCCTCAGTTTGGAGGAAGCTCACAGGGTAAAAGACAGACATCATACAATAGCACTCTGGCCTCTCGGAGAAAGAGGCTAACAGCACACTTTGAGGACTTAGAGCAGTGCTACTTTTCCAACAGAATGTCACGAATCACAGATGACAGCAGAACTGTTAACCAGCTGGATGACTTCATGGAGTGTCTCTCCAAATTCACACGTTACAACTCTGTACGCCCTCTGGCCACTCTGTCTTATGCAAGCGACCTCTACAATGGTTCTAGTATTGTTTCTAGCATTGAGTTTGACCGTGACTGTGATTATTTCGCCATTGCCGGTGTCACCAAGAAAATTAAAGTTTTTGAGTATGGAACAGTGATCCAGGATGCTGTGGACATTCATTATCCTGTCAACGAAATGACATGCAACTCCAAAATAAGCTGTATCAGCTGGAGTAGCTACCACAAGAACCTGTTGGCAAGCAGTGACTATGAGGGAACAGTGATTCTTTGGGATGGGTTTACGGGGCAGAGGTCAAAGGTTTATCAGGAGCATGAGAAGAGATGTTGGAGCGTTGATTTCAACCTTATGGATCCCAAACTTTTGGCATCAGGCTCAGATGATGCAAAAGTCAAGCTGTGGTCCACTAACCTGGATAACTCAGTTGCCAGCATTGAAGCCAAGGCCAATGTGTGCTGTGTCAAATTCAGCCCAACATCTAGGTATCACCTCGCATTTGGATGCGCAGACCACTGTGTCCACTACTATGATTTGCGGAACACTAAGCAACCCATCATGGTCTTCAAAGGTCACCGGAAGGCTGTGTCCTATGCCAAGTTCGTCAATGGAGAAGAGATTGTGTCTGCCTCCACGGACAGCCAGCTAAAGCTGTGGAATGTGAACAAGCCCCACTGCCTGCGCTCTTTCAAAGGCCACATTAATGAGAAAAACTTTGTAGGCCTGGCCTCCAATGGAGATTATGTAGCATGTGGAAGTGAGAACAACTCCCTATATCTGTATTATAAGGGGCTCTCCAAAACATTGCTGACCTTCAAGTTTGACACTGTGAAGAGCGTTCTGGACAAGGACAAGAAGGAAGACGACACTAACGAGTTTGTCAGTGCCGTATGTTGGCGGGCTTTACCAGACGGGGAGTCCAATGTGCTGATTGCAGCCAACAGTCAAGGAACAATCAAGGTACTTGAGCTAATTTGAAGGTCTACTAGAAACAATCATCACATCCTTTTGACAAACCAGTGGAATATTTCTAATGCAATGTGACTgaccacaaaagaaaaaacctcTGGATGCTGACACTGatgttttcacaaaaaaaaaaaagtgctccaGTTTCAGGACCGGTTGTGACCTCCAGGGAATAGATGTGGACAATTCTGGTGGAAAAGGAAATGGTGACTCTTCTTTTAAAAGCCTCATTTGGAGTAAAATGCTTAATTAAAGGCATTAATAAAGACTGAGCCTTCAAAGTAGAGGCAGAAGTTAGAGCTGTGTGAGTACAAAGCCAAAGCACAAGACCAGAACACAATGAAATGCTTTTTGTTGTACAAATAATCAATTGCCACATCATTATTTTGAGCCTGTAGTATCCATATATTCTTTTCATTTGATACAGTATCTGTCTATAAAATTTCCACTCTGTTTGGCTGATGCCACTGGACTCTCCAAAATAATTCTTGGGCCTTCTTCAGTTTATATGTTGCTTATATCAAGGGACCTCGAGACTTGGCTGCCTCATGCAAATAAGGCAGATTTCCTTTAAGATGCTTTGTAAGTCATGTTGAAAAGAAGAtactaaactgatttttaactttaatgtCATTAGTTGCCATGACTTCCTTATTCTTTTCCCCCTTGTGGACATATTTTGTCAGACCTAGGGATGAATAAGATGTTATGATGACACTATGTATTCTCTATTGGGATTATTTAACAATCACCCAAAAACATTGCTGCTCTTTTTATCATTAAATTTCTGTacaagtattatttatttttgtaatttatagAAACTTTGTGAACTTCACACCCAATTATAGAGTGTAGGTTTTTTGGAGCTTGGATTTATGTTGCATCCCAGTAATTCCCTTTTTGTGTACGCATTCTATGATTTTAACCCATtcatttgaatgaataaatgattctCTTTGCATTGa
>XM_026936709.2
TCTGCGGTGGattgaaatgtggaaaaaaaaaaaaccttctgagTGTCAACAAATATCGTTGTAGTAACAAATGCTCGAGTTTTGTTGCGTCGTTCAAGTTcgttaagcttttaatgatagATCTCCTCTGAAcgtgttaaacaaacaaaagcgcTATTTGGTGGTAACAGCCAATGTGATAACTCTTAGCTCAGTCTTAGTGCGTTAACTGGCTAAAACATAaagcagctagctagcattatccGCCCGGATGCGGTGAAAGCGCCTGAGGAAGCTAACGGCAGCGCAGCTTTTTGCTACGGACGGGCCTCGAAAAGGAGTTCAGAGGCGTCTTGAAAGATGTCAGGCTGtcggcagcagcagcagcagcagcagcagcagtccgGTGGTGCTTTGGGATCTGTACCGGGAACGAGCTCTGGGAGCACGGCGACTGCTAACATTGCTAATAACGGGGGGAGCAGCGCTAATGCTAATGGCAATGGCATTTCTTTGCGAAGTCTCGGATCTGGGAGCGAGGCGCAGCTACTGGGTGCACAGAGACCCAGTTTATCCGGCGCCAACCACAGCAAGAAAAGACCTCTATATAACGGTCTTATTAATCCATATGAAGATAAgagtaatgattttgtgtgTCCCATATGTTTTGACATGATAGAGGAAGCTCATATGACTAAATGTGGTCACAGTTTCTGTTACAAATGTATACGGCGGAGTTTAGAGGACAGCAACAGGTGCCCGAAGTGTAATTACATTATTGACAATGTGGATCAGCTGTACCCCAACTTCTTAGTTAATGAGCTGATCCTCAAGCAGAAACAGAGATCCGAAGAGAAGCGACTAAAACGGGACCACCCTAATGGAACCAAATGGCAGTTTTTCCAAGATGTTCTTGGCACAGACCAGGAGCATCTGGATTTAGCAAATGTCAACTACATGTTGGAACTGCTGGTGCAGAAAAAGAAGCAGCTTGAAGCGGAATCGCAAGCAGCTCAGCGTCAAATCCTAATGGAGTTCTTGAAAGAAGCTAGGAGGAATAAGAGAGAGCAACTAGAGCAATTACAGAAAGAACTGAACTTTTTGGAAGAGGACATAAAGAGTGTTCAGGATATGAGTGGGCTGTACTCACCAGTTATTGATATGGACCCCAATTTGGACAGCACTGTTCCCCAGTTTGGAGATGCACACTCTCCTGCACCCAGtaGCATCATTGAACCCACAGAGTATATCCAGCCTCCTCAGTTTGGAGGAAGCTCACAGGGTAAAAGACAGACATCATACAATAGCACTCTGGCCTCTCGGAGAAAGAGGCTAACAGCACACTTTGAGGACTTAGAGCAGTGCTACTTTTCCAACAGAATGTCACGAATCACAGATGACAGCAGAACTGTTAACCAGCTGGATGACTTCATGGAGTGTCTCTCCAAATTCACACGTTACAACTCTGTACGCCCTCTGGCCACTCTGTCTTATGCAAGCGACCTCTACAATGGTTCTAGTATTGTTTCTAGCATTGAGTTTGACCGTGACTGTGATTATTTCGCCATTGCCGGTGTCACCAAGAAAATTAAAGTTTTTGAGTATGGAACAGTGATCCAGGATGCTGTGGACATTCATTATCCTGTCAACGAAATGACATGCAACTCCAAAATAAGCTGTATCAGCTGGAGTAGCTACCACAAGAACCTGTTGGCAAGCAGTGACTATGAGGGAACAGTGATTCTTTGGGATGGGTTTACGGGGCAGAGGTCAAAGGTTTATCAGGAGCATGAGAAGAGATGTTGGAGCGTTGATTTCAACCTTATGGATCCCAAACTTTTGGCATCAGGCTCAGATGATGCAAAAGTCAAGCTGTGGTCCACTAACCTGGATAACTCAGTTGCCAGCATTGAAGCCAAGGCCAATGTGTGCTGTGTCAAATTCAGCCCAACATCTAGGTATCACCTCGCATTTGGATGCGCAGACCACTGTGTCCACTACTATGATTTGCGGAACACTAAGCAACCCATCATGGTCTTCAAAGGTCACCGGAAGGCTGTGTCCTATGCCAAGTTCGTCAATGGAGAAGAGATTGTGTCTGCCTCCACGGACAGCCAGCTAAAGCTGTGGAATGTGAACAAGCCCCACTGCCTGCGCTCTTTCAAAGGCCACATTAATGAGAAAAACTTTGTAGGCCTGGCCTCCAATGGAGATTATGTAGCATGTGGAAGTGAGAACAACTCCCTATATCTGTATTATAAGGGGCTCTCCAAAACATTGCTGACCTTCAAGTTTGACACTGTGAAGAGCGTTCTGGACAAGGACAAGAAGGAAGACGACACTAACGAGTTTGTCAGTGCCGTATGTTGGCGGGCTTTACCAGACGGGGAGTCCAATGTGCTGATTGCAGCCAACAGTCAAGGAACAATCAAGGTACTTGAGCTAATTTGAAGGTCTACTAGAAACAATCATCACATCCTTTTGACAAACCAGTGGAATATTTCTAATGCAATGTGACTgaccacaaaagaaaaaacctcTGGATGCTGACACTGatgttttcacaaaaaaaaaaaagtgctccaGTTTCAGGACCGGTTGTGACCTCCAGGGAATAGATGTGGACAATTCTGGTGGAAAAGGAAATGGTGACTCTTCTTTTAAAAGCCTCATTTGGAGTAAAATGCTTAATTAAAGGCATTAATAAAGACTGAGCCTTCAAAGTAGAGGCAGAAGTTAGAGCTGTGTGAGTACAAAGCCAAAGCACAAGACCAGAACACAATGAAATGCTTTTTGTTGTACAAATAATCAATTGCCACATCATTATTTTGAGCCTGTAGTATCCATATATTCTTTTCATTTGATACAGTATCTGTCTATAAAATTTCCACTCTGTTTGGCTGATGCCACTGGACTCTCCAAAATAATTCTTGGGCCTTCTTCAGTTTATATGTTGCTTATATCAAGGGACCTCGAGACTTGGCTGCCTCATGCAAATAAGGCAGATTTCCTTTAAGATGCTTTGTAAGTCATGTTGAAAAGAAGAtactaaactgatttttaactttaatgtCATTAGTTGCCATGACTTCCTTATTCTTTTCCCCCTTGTGGACATATTTTGTCAGACCTAGGGATGAATAAGATGTTATGATGACACTATGTATTCTCTATTGGGATTATTTAACAATCACCCAAAAACATTGCTGCTCTTTTTATCATTAAATTTCTGTacaagtattatttatttttgtaatttatagAAACTTTGTGAACTTCACACCCAATTATAGAGTGTAGGTTTTTTGGAGCTTGGATTTATGTTGCATCCCAGTAATTCCCTTTTTGTGTACGCATTCTATGATTTTAACCCATtcatttgaatgaataaatgattctCTTTGCATTGattatttgaatgaataaatgattctctttgcattgatta

Function

symbol description
rfwd2 E3 ubiquitin-protein ligase RFWD2

NR:

description
E3 ubiquitin-protein ligase RFWD2 isoform X2

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10143 RFWD2, COP1; E3 ubiquitin-protein ligase RFWD2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936708.2 False 3392 mRNA 0.43 20 25643402 25664372
XM_026936709.2 True 3427 mRNA 0.43 20 25643402 25664410

Neighbor

gene id symbol gene type direction distance location
astn1 astn1 coding upstream 90563 25270222 ~ 25552839 (+)
dars2 dars2,LOC107658301,LOC104960769,LOC104948518 coding upstream 596085 25021613 ~ 25047317 (+)
klhl20 klhl20,LOC106569069 coding upstream 630096 24994877 ~ 25013306 (+)
kiss1ra kiss1ra,LOC108267265,LOC108411985,LOC107657423,LOC107599909 coding upstream 835998 24792295 ~ 24807404 (+)
zgc:113531 LOC108267389,LOC108430294,LOC106532842,LOC105940236,LOC107081705 coding upstream 1046293 24587207 ~ 24597109 (+)
mrps14 mrps14,LOC107678929,LOC107726917,LOC107559053,LOC107563590 coding downstream 286744 25951154 ~ 25953899 (+)
cacybp cacybp,LOC100304883 coding downstream 290546 25954956 ~ 25964158 (+)
plk3 plk3,LOC107726922,LOC107557223,LOC107722069,LOC107658359,LOC107678927 coding downstream 309471 25973881 ~ 25979456 (+)
rasal2 rasal2,LOC107678931 coding downstream 378513 26042923 ~ 26124146 (+)
si:ch211-284o19.8 LOC108414935 coding downstream 649933 26314343 ~ 26318878 (+)
G70808 NA non-coding upstream 16465 25626713 ~ 25626937 (+)
G70798 pappa2 non-coding upstream 29726 25613444 ~ 25613676 (+)
G70782 NA non-coding upstream 53215 25589967 ~ 25590187 (+)
G70780 NA non-coding upstream 56944 25586253 ~ 25586458 (+)
G70778 NA non-coding upstream 57868 25585326 ~ 25585534 (+)
G71163 tnn non-coding downstream 259542 25923952 ~ 25928740 (+)
G71322 NA non-coding downstream 374772 26039182 ~ 26039383 (+)
G71329 NA non-coding downstream 464209 26128619 ~ 26128826 (+)
G71373 NA non-coding downstream 541148 26205558 ~ 26205786 (+)
G71374 NA non-coding downstream 543910 26208320 ~ 26208544 (+)
kif2c kif2c other upstream 772139 24859026 ~ 24871263 (+)
G69971 NA other upstream 1533513 24108795 ~ 24109889 (+)
klhl18 klhl18,LOC107657445,LOC107701005,LOC107733883,LOC107730797 other upstream 1537179 24028106 ~ 24106223 (+)
G69509 LOC108267411 other upstream 2323059 23318504 ~ 23320343 (+)
LOC113540463 NA other upstream 2990955 22649810 ~ 22652447 (+)
tnr tnr other downstream 43417 25707827 ~ 25881110 (+)
LOC113539772 kiaa0040 other downstream 232607 25897017 ~ 25902006 (+)
LOC117597118 LOC108261462,LOC108261092,LOC108261095 other downstream 551654 26216064 ~ 26224038 (+)
G71385 NA other downstream 564354 26228764 ~ 26229191 (+)
zgc:66427 zgc:66427,LOC108267510,LOC107738154,LOC101067737,LOC107100876,LOC103396713,LOC104950485,LOC107659393,LOC107668973,LOC107706368,LOC107557724,LOC107591360 other downstream 623880 26288290 ~ 26292784 (+)

Expression


Co-expression Network