LOC113540294 (LOC108267627,LOC108267624)


Basic Information

Item Value
gene id LOC113540294
gene name LOC108267627,LOC108267624
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29208334 ~ 29218020 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936710.2
CTCTCCGGCAGGTTTTCAggttgctataacagcagaagagagagaggcaacGTCATGAGCGTATGGTGGAAATCTACCAGTCGTGCTGTTACTCATTCTACTTTGCTCTCCAAACCGAATTTACTGCTACTGGGTAGAAGAAAAAAAGCTTCCACTGAGTGTCATGGATCCAGCTGTTCAACGCACGGGTCATTTTGCACCCAACTGCATTGATCTCCAACCAGGAAAAAACTTCTCCAATCCCAGTTATGGACAAGTGGCTCTCCCGCCAGGCTACGTTCCTCCTCAGGCTCCGGCGATGATGCCGGCTCCTCAGAGACCGGCCGGGTGTCCACCTGGGCTGGAGTACTTAACGCAGATCGACCAGCTTCTCGTTCACCAGAAAGTGGAGCTGGCTGAAGTTTTTATAGGATGGGAGACCAACAACAAGTATCTGGTGAAGAACTCACTCGGGCAGCAGGTCTTCTTCGTGGCCGAGGAGAACGACTGCTGTAACCGGAACTGCTGCGGACCGCTTCGCTCCTTCGCCCTCCACGTCCAGGACAACATGGGCCAGGAGGTGCTCACGCTCACACGTCCTCTACGCTGCAGCAGCTGCTTTTACCCCTGCTGTCTGCAAGAGctGGAGGTGCAATCTCCACCGGGGACTCCTATCGGGTACGTGGTTCAGACGTGGCACCCTTATTTACCCAAGTACACCGTTCAAAATGAGAAGAAGCAGGACGTTTTGAAGATCATGGGACCTTGCTGCACGTTTAAATGCTGTTCCGATGTGAATTTTGAGgTTTTGTCGATGGATGAAACAGCGTCTGTGGGCCGCATCAGTAAGCAGTGGACAGGCTACGTACAAGAGGCTTTCACGGACGCAGACAATTTCGGGATCAAGTTCCCTCTGGACCTGGATGTGAAGATCAAGGCTGTGCTTCTCGGAGCCTGTTTTCTCATCGATTTCATGTTCTTTGAGAATAAACAGAATAGACACTGAGTGGGAGGTTCCATCCTGTTTTCCTCATCGTGAGCCGTCCGTGCTTCACGTCTTTGCTGGACccaaatatatataacatgagaatatatatatatctttcttGCTACAAGTATGCAATGTATCTTTAATACACTGTACATGTACATCGTGTATGGGACTTCTCATTTATATGTGCTTTTGTGTTATAAGCTGTAGATGGCTCCATAGCGCAATTTTCCTGAGCAGCTGTCCGACTGTCACTGTGCCGTCGCGTCGTTGTGTCGTTGTGTCGTTGTGTCGTTGTGTATACACCGTAAATGTTACAGTGACCAAGTTCTTTAGACAGAAATCTTTTGAAAGCAAAGAATCACCACTGATTGGGTCAGTTTGGCAAAGACTAGGCCTTAACTGGTGCCCAAGAAACCATTACAGTCAGATTGCTACAACAGAAATACCAAAGAACAGAGGTTTTGTGTTGAAAATGGACAACACTGAGTCTCTTAACACTTCCATAACGTACACAGCCTGTCTCTAGGCTGACTAGAACTGGGTGTTTTTTCTGCCAGGGTGCAGAACACAAGCCTGCGTCCTGGGGTGTGACTGGTGGATGCGTTTGGTTTGATCAATAATGGAGGATTCGTCTAACGCAGGCATCTAGAGAGGCAGTCGTGTTCCAAATGAAACGTCGCAGGCGTTTCACCTGACCCACATCGGGCCATCTGTGGACTATAGACTCTGTCATAACTTCCCGTGACTACTATCCACACTTCTAACAAAACTGAGAACATTTTTGAACCTATGCATGACTCAACCCGCCCAACAAAAACAACCCAATTAAGAATAGCGTCTGATCTGGATGTTCacaaagaaaacaggaaacataATGGCCGTGCAATCGCCGAGATAGAACTCCCGATCTCGTGATGACTCGGATACACCAAACTGGAACATAACCCAAACTAACCAGGCTAAGAAAGTAAATCAGGCCAAAGGAATAgcatcatttaaataatataaagaaaattaaagaacTCGTGCTATTTCTATTTCCACATTTCTGCGATTTATACAacatagctaacattagacaagtatatatgTAATCAGTAAATGGTTATTACGCATTTACCAGAATTTGGCTGAAAATACTCCGAAAATAACGCCACTGTTTTAAATCCCTATCAATAAACTGTAGCGAACGATTGACGTATTTTTGAATGAAAATTCATAGCAGCGTACTCTTTTTGCTGTAGCAAAAGTTACACgtaatacacaaaaaaaagtcaagaaaaACAGGATGCTTTGGACAAAATGGTTGATAATGAAACACCAGAACATGGCGTTAATTCGATGGGGTGGGGTTCCAAAGTTGTGAGATTGTAGATGAGCTCGTTCTCCTAACGTTTCCTCTCTTCATCGCTCGCGTAATCACAACGAGCGACGCAAACGGAAATGTCATTAACGTTATATCCATCGCTGTTAGAGtgtaaggaaaaaaatcctTCATTCTGATTATACGAAGGTGCTCGACAAATCATTTCATCTCTAAGTCTTCATCTCAGTATTTAAGAAACCTTCATAATATGCACAGCAACAGTGATTAAAAGTCAATAAATCCTCGAACTAGCTTTGTTATATGAAGTCGTCTTGttacaagattaaaaaaaaagctatctCACCACTTGTAGTAATTCttaaaaactatatatttttttgtttattgtttattttcttacattttagtGATTATTCTCAATgcatgtaacaaaaaaaaaaaaccacacacaataAAGAAACAAGAATCAGT
>XM_026936711.2
CAGTGCAcatttttccacacacacacacacacacactccagacacTTTTATTATCAGCTTCCTATTATGTCCAGCACTGAAAGACCCCCTTTTAAGCCTCCCCGCTCGGTTTCTCCTCCCCCTCCCTCACGAACACAAAAACATCTGCTTTCTGCGCTCCCAAGAACACATCTGCTTTCTGTGCTCCCAAGTTCACATTTAAAAAGGCTACGACTATTCTCATTGTTTGTCAGGAAAAAAAGCTTCCACTGAGTGTCATGGATCCAGCTGTTCAACGCACGGGTCATTTTGCACCCAACTGCATTGATCTCCAACCAGGAAAAAACTTCTCCAATCCCAGTTATGGACAAGTGGCTCTCCCGCCAGGCTACGTTCCTCCTCAGGCTCCGGCGATGATGCCGGCTCCTCAGAGACCGGCCGGGTGTCCACCTGGGCTGGAGTACTTAACGCAGATCGACCAGCTTCTCGTTCACCAGAAAGTGGAGCTGGCTGAAGTTTTTATAGGATGGGAGACCAACAACAAGTATCTGGTGAAGAACTCACTCGGGCAGCAGGTCTTCTTCGTGGCCGAGGAGAACGACTGCTGTAACCGGAACTGCTGCGGACCGCTTCGCTCCTTCGCCCTCCACGTCCAGGACAACATGGGCCAGGAGGTGCTCACGCTCACACGTCCTCTACGCTGCAGCAGCTGCTTTTACCCCTGCTGTCTGCAAGAGctGGAGGTGCAATCTCCACCGGGGACTCCTATCGGGTACGTGGTTCAGACGTGGCACCCTTATTTACCCAAGTACACCGTTCAAAATGAGAAGAAGCAGGACGTTTTGAAGATCATGGGACCTTGCTGCACGTTTAAATGCTGTTCCGATGTGAATTTTGAGgTTTTGTCGATGGATGAAACAGCGTCTGTGGGCCGCATCAGTAAGCAGTGGACAGGCTACGTACAAGAGGCTTTCACGGACGCAGACAATTTCGGGATCAAGTTCCCTCTGGACCTGGATGTGAAGATCAAGGCTGTGCTTCTCGGAGCCTGTTTTCTCATCGATTTCATGTTCTTTGAGAATAAACAGAATAGACACTGAGTGGGAGGTTCCATCCTGTTTTCCTCATCGTGAGCCGTCCGTGCTTCACGTCTTTGCTGGACccaaatatatataacatgagaatatatatatatctttcttGCTACAAGTATGCAATGTATCTTTAATACACTGTACATGTACATCGTGTATGGGACTTCTCATTTATATGTGCTTTTGTGTTATAAGCTGTAGATGGCTCCATAGCGCAATTTTCCTGAGCAGCTGTCCGACTGTCACTGTGCCGTCGCGTCGTTGTGTCGTTGTGTCGTTGTGTCGTTGTGTATACACCGTAAATGTTACAGTGACCAAGTTCTTTAGACAGAAATCTTTTGAAAGCAAAGAATCACCACTGATTGGGTCAGTTTGGCAAAGACTAGGCCTTAACTGGTGCCCAAGAAACCATTACAGTCAGATTGCTACAACAGAAATACCAAAGAACAGAGGTTTTGTGTTGAAAATGGACAACACTGAGTCTCTTAACACTTCCATAACGTACACAGCCTGTCTCTAGGCTGACTAGAACTGGGTGTTTTTTCTGCCAGGGTGCAGAACACAAGCCTGCGTCCTGGGGTGTGACTGGTGGATGCGTTTGGTTTGATCAATAATGGAGGATTCGTCTAACGCAGGCATCTAGAGAGGCAGTCGTGTTCCAAATGAAACGTCGCAGGCGTTTCACCTGACCCACATCGGGCCATCTGTGGACTATAGACTCTGTCATAACTTCCCGTGACTACTATCCACACTTCTAACAAAACTGAGAACATTTTTGAACCTATGCATGACTCAACCCGCCCAACAAAAACAACCCAATTAAGAATAGCGTCTGATCTGGATGTTCacaaagaaaacaggaaacataATGGCCGTGCAATCGCCGAGATAGAACTCCCGATCTCGTGATGACTCGGATACACCAAACTGGAACATAACCCAAACTAACCAGGCTAAGAAAGTAAATCAGGCCAAAGGAATAgcatcatttaaataatataaagaaaattaaagaacTCGTGCTATTTCTATTTCCACATTTCTGCGATTTATACAacatagctaacattagacaagtatatatgTAATCAGTAAATGGTTATTACGCATTTACCAGAATTTGGCTGAAAATACTCCGAAAATAACGCCACTGTTTTAAATCCCTATCAATAAACTGTAGCGAACGATTGACGTATTTTTGAATGAAAATTCATAGCAGCGTACTCTTTTTGCTGTAGCAAAAGTTACACgtaatacacaaaaaaaagtcaagaaaaACAGGATGCTTTGGACAAAATGGTTGATAATGAAACACCAGAACATGGCGTTAATTCGATGGGGTGGGGTTCCAAAGTTGTGAGATTGTAGATGAGCTCGTTCTCCTAACGTTTCCTCTCTTCATCGCTCGCGTAATCACAACGAGCGACGCAAACGGAAATGTCATTAACGTTATATCCATCGCTGTTAGAGtgtaaggaaaaaaatcctTCATTCTGATTATACGAAGGTGCTCGACAAATCATTTCATCTCTAAGTCTTCATCTCAGTATTTAAGAAACCTTCATAATATGCACAGCAACAGTGATTAAAAGTCAATAAATCCTCGAACTAGCTTTGTTATATGAAGTCGTCTTGttacaagattaaaaaaaaagctatctCACCACTTGTAGTAATTCttaaaaactatatatttttttgtttattgtttattttcttacattttagtGATTATTCTCAATgcatgtaacaaaaaaaaaaaaccacacacaataAAGAAACAAGAATCAGT

Function

NR:

description
PREDICTED: phospholipid scramblase 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936710.2 False 2771 mRNA 0.43 10 29208334 29218020
XM_026936711.2 True 2865 mRNA 0.44 10 29211965 29218020

Neighbor

gene id symbol gene type direction distance location
LOC113540202 LOC108267626,LOC108437507 coding upstream 2591 29196589 ~ 29205743 (+)
miga1 miga1 coding upstream 24078 29172756 ~ 29184256 (+)
ak5 ak5,LOC107703241,LOC107681791,LOC107599844 coding upstream 79770 29080184 ~ 29128564 (+)
st6galnac5a st6galnac3,st6galnac5,st6galnac5a,LOC107751866,LOC107708707,LOC107681827,LOC107599846,LOC107703199,LOC107558179 coding upstream 165339 28940674 ~ 29042995 (+)
cope cope,LOC107709006,LOC107681743 coding upstream 277802 28923611 ~ 28930532 (+)
LOC113539851 LOC108267627 coding downstream 1506 29219526 ~ 29225911 (+)
pls1 pls1,LOC108268020,LOC108437523,LOC107681752,LOC107709028 coding downstream 121103 29339123 ~ 29356789 (+)
ephb3a ephb3a,LOC108267069,LOC108437521,LOC107681809,LOC107599837,LOC107708817,LOC107656865,LOC105889460,LOC107722542 coding downstream 172013 29390033 ~ 29423768 (+)
LOC113540045 LOC108267996 coding downstream 237531 29455551 ~ 29459295 (+)
tbl1xr1b tbl1xr1b,LOC108267995,LOC108437519,LOC103032574,LOC107656866,LOC103359463,LOC107568629 coding downstream 263222 29481242 ~ 29496585 (+)
G72917 NA non-coding upstream 154116 29053486 ~ 29054218 (+)
G72913 NA non-coding upstream 274025 28933983 ~ 28934309 (+)
G72910 NA non-coding upstream 276936 28931076 ~ 28931398 (+)
G72892 NA non-coding upstream 289936 28917742 ~ 28918398 (+)
G72889 dnajb4,LOC107708915,LOC107566472,LOC107690981 non-coding upstream 293076 28914629 ~ 28915258 (+)
G73000 LOC108268022,LOC108437525,LOC107681802,LOC107599840,LOC107565821,LOC107722302 non-coding downstream 81115 29299135 ~ 29301133 (+)
G73072 NA non-coding downstream 265242 29483262 ~ 29524242 (+)
G73069 eif4a2,LOC107708841,LOC107103884 non-coding downstream 301088 29519108 ~ 29521022 (+)
G73088 NA non-coding downstream 306278 29524298 ~ 29524836 (+)
G73089 NA non-coding downstream 308182 29526202 ~ 29526918 (+)
fubp1 fubp1 other upstream 12185 29181767 ~ 29196149 (+)
G72873 NA other upstream 296230 28874356 ~ 28912104 (+)
selenot1a selenot,selt1a,LOC107681817,LOC107708642 other upstream 411175 28792847 ~ 28797159 (+)
gng5 NA other upstream 446883 28758545 ~ 28761451 (+)
htr5ab htr5a,htr5ab,LOC108412811,LOC103024346,LOC107684958,LOC107659435,LOC107591053,LOC107742155,LOC107598724 other upstream 870161 28316404 ~ 28338173 (+)
asip2b NA other downstream 401973 29619993 ~ 29623797 (+)
zgc:153115 LOC108268059 other downstream 455494 29673514 ~ 29681175 (+)
uggt1 uggt1,LOC107748935,LOC107683622,LOC107727334 other downstream 1236737 30454757 ~ 30478293 (+)
G73944 NA other downstream 1528111 30746131 ~ 30767132 (+)
spsb4a spsb4a,LOC108267127,LOC108440634,LOC103021520,LOC107706335,LOC107561810,LOC107694659,LOC107583109 other downstream 1843710 31061730 ~ 31097929 (+)

Expression


Co-expression Network