pde4bb (pde4bb,LOC108267485,LOC108430746,LOC107681771,LOC107719260,LOC107593782,LOC107671696,LOC107559365)


Basic Information

Item Value
gene id pde4bb
gene name pde4bb,LOC108267485,LOC108430746,LOC107681771,LOC107719260,LOC107593782,LOC107671696,LOC107559365
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 27325751 ~ 27371031 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936714.2
aagagagagagagagagagagagagagatgcacaccTTCAGCACATTCCCACCGCAGTTTGGACGGGACAGGAGGCTTTAGAAGCGGCACTCTTTcatctcatccctccatcactgGGCGTTTCTTTCAGCGGATGGAGTGAGCAGGAGTGAGCGGAGCATCTGGACGTTGTGAAGGTCTCATCTGCATTCATCTCACACTGCCTGAGGatagaggaggaagagaagaggaggatgaggaagagccGCAGCGTGCTGGCAGTGACGCCTGAAGACGAGGGCAAGGAGCTCCCAGCATGCACCGGTGCCACTCTTGGTTCCGAGCTGCGTCGTTGCTGCCGCCGTCACTCGGGGACGCCCACCTTGCCGCCGTTGTCATGGCGTCAGACAGAGAGGATGCGGAGTCCTGAGGAAGATCTCATGAGCCGACCGACCTCGCTGGCCTTCATTGACCCACCACGCATAGACATCACACCGGTACCACCTGAGAGtttGGAGGTGGAGAACGGTCCGTGCAGTCCTGTGGAGCTTCAGGTTTCTCCCGGTTCTGCTTTGGTTCTCCCTCATGGTCAGCGCAGAGAGTCATTCCTGTACCGCTCCGACAGCGACTACGAACTCTCACCCAAATCCACCTCACGCAACTCCTCCATCGTGGGAGAACTACACGGTGAAGATCTCATCGTCACACCGTTCGCTCAGGTCCTCGCCAGTCTGCGTACGGTCAGGAGTAACTTCAGCGTTTTGACCAACGTGCATGGACCGTCCAGCAAgAGATCTCCAGTTAGCATGCAGCCTCCGTTAAACAGAGCCTCGCTATCAGATGAGTCGTATCAGAAGCTGGCCTTGGAGACCATGGAGGAGCTGGACTGGTGCCTGGATCAGCTAGAGACCATCCAGACACACCGCTCAGTCAGCGACATGGCCTCCAAcaagTTCAAGAGGATGCTGAACCGTGAGCTCACACACCTGTCGGAAATGAGCCGCTCTGGGAACCAGGTGTCCGAGTTCATCTCCAACACGTTCTTAGACAAACAGAATGAGCTGGAGATCCTGTCGCCTCCTCCGAAGTCTcgggagaggaagaggaaacagcaacaacaaccgCTCATGACTCAGATCAGTGGAATGAGGAAGGTGGCACATGGACCAGGCATCTCCAGCAGCTGCAGCGTGGCCCGATTTGGAGTCAAGACCGACCTTGAAGACCTGCTCGCAAAGGACTTGGAGAATATCAACAAGTGGGGATTGAACATCTTCAGGATTGCTGAGCATTCCCATCAACGCCCGCTCACCTGCGTCATGTATGCTATCTTCCAGGAAAGAGATTTGATGAAAACCTTCAGGATCCCAATGGACACCTTTGTGACCTACATGATGACCCTGGAGGACCACTACCACTCAGACGTGGCTTACCATAACAGCCTGCATGCTGCTGATGTCGCACAGTCCACTCACATCCTCTTGTCCACCCCTGCTCTAGAGGCGGTCTTCACAGACTTGGAGATTCTGGCAGCCATCTTTGCAGCAGCGATCCATGACGTGGACCACCCGGGGGTCTCGAACCAGTTCCTGATTAATACCAACTCAGAACTGGCGCTCATGTACAATGACGAATCTGTTCTCGAGAACCATCACTTGGCCGTAGGATTTAAGCTCCTACAAGGGGAAAACTGCGACATCTTCCAGAACCTGTCAAAGAAACAGCGGCAGTCCCTTCGCAAAATGGTCATCGACATGGTTCTAGCAACAGATATGTCCAAACACATGGGCTTGCTAGCGGATCTGAAGACCATGGTGGAGACCAAGAAAGTGACCAGTTCAGGAGTGTTGCTGCTGGACAACTACACGGACAGGATACAGGTCCTGCGCAATATGGTCCACTGCGCCGATCTCAGCAACCCCACCAAGCCTTTGGATCTTTACCGACAATGGACAGACCGTATCATGGAGGAGTTCTTCCACCAGGGtgaccgagagagagagcgcggcATGGAGATCAGCCCCATGTGCGACAAGCACACTGCTTCTGTCGAGAAATCCCAGGTGGGATTCATTGACTACATCGTGCACCCTCTGTGGGAGACGTGGGCGGATCTGGTGCACCCAGACGCCCAGGACATCCTGGACACTCTGGAGGAGAACAGGAACTGGTACCATAGCATGATCCCTCAGAGTCCATCTCCTCCGTTCTATGAGGCTGGAGGAGACAAGTTCCAATTTGAACTGACTTTGGAAGGTGAAGATGGGGACAATATTCACCGAGAAGGACCTTTGGAAACAGCTGACATGGATATAGCTCCTTCCTCACCAGCTGAGACGTAGCATCCCACTACGTTGGCGTTTGGTCAGCCATGTTGGTTTATTCCATGAAATGAAGATCAGTGAATCTCCTTTTAATGAAGAAGCTATTTGCGGACTTGACTAGTCCAGAGGCTCTTTTCGCAGAGCGTGATCAGAAGGTAACGATTCCATAGAGCTGGAGTTTGTAAAACTCAACCAGAAAGTTCTCGTGTGGTTTGATGTTCCGACACTGAAGCAGGAACTAAGCAGATCCTGAAGCTTAAATGTGGTGCTAGTACGGGATGCTATGAAGGAGAACTACTGACTGATGATCCGTATGGATGTACTTTTTTCGTACCACAAAGacacacacgttttttaaaCTTGTGTGTAATTTGTAATGCTTGTTTATCATAAACACAGCAGAACCCACATACACATTTAACATGAagggatttttttctgttgaaaaaaaaacgtGAAGGAAAAAATTAACTTTGCCCGAAGTGTTTAGATCAGTCTTATTTGACCTAGGGAAACAATGGTTTATAGAAAAACCTGTATGTTCACGAagtacacattttctttatttgttcatAAGAGACAGTATTCACTGTGTTAAgcttttagttgtttttttaattattgttattttttaaaacatggtaCATGTTTTTGTATTGTAAATAGAAGCGAATGAACCCACAATGAAAGCACTTTAATGCTGACACTGAAACCACTTTAGGATAATGTAAAGCAGTGATGCCACGCAACATCCAAAATTGAAACTGTCCACATTTTAAACTGTCACGCTACAGTAAGCTTGCCAAAATCATGTTTCAGTACAGCTGATTTAAGAAATACAACATGATATTTCAGTCATGACAGTAATCATTGACGTCAGTGCCCCGTCTTTCTCAGTATagtcatgcacacacaggaTGTGGTATAAAGAAGTCGTGCGTACATGTCGCGCATCCTGAAATCAAGTTTAAAACTCCTGCAGTAGGTTGGCATTGTGGTCACATGCAGCACCCTTAAAGCCAcaaagctagaaaaaaaaattatgcttaTTTCTAAAATTGTTTGCAATTGTCTTCAAACACATTTAATCTTATAACAGTTTGTTTAAAACAGCTGTTTGTTCCCTTGTAGTATTAAATAGCAAACAAAATTTGTCACGGacgacaaaaaacaaacaagtctcacttttttttttttgtatcattgcAGTGCTAATGAGTATTTACCCTCATAACTTCCCTGGTGGAATGTATGTCATTATTTGTTACTTTGTGCTGTTGTATTGTTGTATTACTTtgtgaattttattattttattgtgtgcTGCACAAAAAACAAAGTGACTAACCGGCCCACACTGTGATGTCATGGTGTATCCGTGTCACTTACCAAAGAATTTATTAAACCTGAAAATTTTGGAAA

Function

symbol description
pde4bb Predicted to enable 3',5'-cyclic-AMP phosphodiesterase activity and transmembrane transporter binding activity. Predicted to be involved in signal transduction. Predicted to act upstream of or within cAMP catabolic process. Predicted to be active in cytosol; nucleus; and perinuclear region of cytoplasm. Orthologous to human PDE4B (phosphodiesterase 4B).

NR:

description
PREDICTED: cAMP-specific 3',5'-cyclic phosphodiesterase 4B-like isoform X1

GO: NA

KEGG:

id description
K13293 PDE4; cAMP-specific phosphodiesterase 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936714.2 True 3724 mRNA 0.47 17 27325751 27371031

Neighbor

gene id symbol gene type direction distance location
LOC113540484 leprot,LOC108430744 coding upstream 7739 27313077 ~ 27318012 (+)
LOC113539841 LOC108267486,LOC107719261,LOC107593886,LOC107671769,LOC107559363,LOC107754779 coding upstream 39097 27274172 ~ 27286654 (+)
LOC113539951 LOC108267487 coding upstream 54957 27265570 ~ 27270794 (+)
LOC113540389 LOC108267490 coding upstream 88654 27174061 ~ 27237097 (+)
ebna1bp2 ebna1bp2 coding upstream 174627 27144064 ~ 27151124 (+)
tctex1d1 tctex1d1 coding downstream 39192 27410223 ~ 27412780 (+)
bcl6ab LOC108268038 coding downstream 50254 27421285 ~ 27426694 (+)
fam78ba LOC108267646,LOC108430701,LOC103149501,LOC101155797,LOC105925252,LOC103479089,LOC101481240 coding downstream 70478 27441509 ~ 27447248 (+)
imp3 imp3,LOC107671714 coding downstream 89237 27460268 ~ 27466505 (+)
zgc:55943 c7h1orf21,zgc:55943,LOC108430752,LOC103042176,LOC107709356,LOC107671715,LOC107559369,LOC107593773 coding downstream 97017 27468048 ~ 27477673 (+)
G71942 NA non-coding upstream 30387 27293356 ~ 27295364 (+)
G71939 NA non-coding upstream 36046 27287173 ~ 27289705 (+)
G71941 NA non-coding upstream 41288 27284060 ~ 27284463 (+)
G71874 NA non-coding upstream 95651 27229862 ~ 27230100 (+)
G71869 NA non-coding upstream 107296 27218227 ~ 27218455 (+)
G71977 NA non-coding downstream 442 27371473 ~ 27371678 (+)
G71980 NA non-coding downstream 9817 27380848 ~ 27381072 (+)
G72005 NA non-coding downstream 57388 27428419 ~ 27429222 (+)
G72012 NA non-coding downstream 88639 27459670 ~ 27460197 (+)
LOC113540179 NA non-coding downstream 112789 27483820 ~ 27487711 (+)
gng7 NA other upstream 444281 26872676 ~ 26881470 (+)
LOC117597079 LOC108267150,LOC107738160 other upstream 949925 26353189 ~ 26375826 (+)
zgc:66427 zgc:66427,LOC108267510,LOC107738154,LOC101067737,LOC107100876,LOC103396713,LOC104950485,LOC107659393,LOC107668973,LOC107706368,LOC107557724,LOC107591360 other upstream 1032967 26288290 ~ 26292784 (+)
G71385 NA other upstream 1096560 26228764 ~ 26229191 (+)
LOC117597118 LOC108261462,LOC108261092,LOC108261095 other upstream 1101713 26216064 ~ 26224038 (+)
sgip1b LOC108267185,LOC108430747,LOC107593781,LOC107719259,LOC107681818,LOC107709351 other downstream 13776 27384807 ~ 27406398 (+)
insig1 insig1 other downstream 931820 28302851 ~ 28383422 (+)
htr5ab htr5a,htr5ab,LOC108412811,LOC103024346,LOC107684958,LOC107659435,LOC107591053,LOC107742155,LOC107598724 other downstream 945373 28316404 ~ 28338173 (+)
gng5 NA other downstream 1387514 28758545 ~ 28761451 (+)
selenot1a selenot,selt1a,LOC107681817,LOC107708642 other downstream 1421816 28792847 ~ 28797159 (+)

Expression


Co-expression Network