dnajc3b (LOC108267637,LOC108434608,LOC107707053,LOC107683555,LOC107702051)


Basic Information

Item Value
gene id dnajc3b
gene name LOC108267637,LOC108434608,LOC107707053,LOC107683555,LOC107702051
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16356241 ~ 16366191 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936717.2
ACTCACCACGCTGACATGTAGGCTGATTTGAATTCTACGCCCAAGACCTGGAAGGTAGTTTCGCAAGCATAAAGTTGACAGCTGATCGTAATAGGCATTAGAATGGCCTCTCACCTCAACTGTCTGAAATGACAATCCAGCTTTATAGCGCGGAGTAGGAGCTTATAAACAGAGCTTTATCGGAACTTTATTTCTGCGGTCTGATAAGGCAGTCGGAAGCATTTGTCAGTCGGACACGTGAAACATCATATCGGGAAGTTGATGTTTACCTGTAAAGATTATTTTTTGGCGATATCTTCATTAAAAGTTGATTTTACGTCTGTTCAATTTTTTGGATTAGTCGtcagaaattatatatataaaaaagtttaattaagGAGGTGTGACGATTTAAAACGATGGAGTCGGGACGCCGGAGAGGTTTAAGTAGCCTCCTGTCCTCAATATCACTAGTCTGTGTCGTCCTGGACCTGCAGCTGGACGGTGTGTTAGGTGCCACCCATGTGGAAATCGAGCAGCACCTGGAGATGGGCCGCAAGCTTCTGGCCGCAGGGCAACTGGCGGAGGCGCTCTCCCATTACCACTCAGCAGTTGAGGGTGACTCAAAGAATTACCTGACTTACTACAAACGTGCGGCTGTGTTTCTGGCCATGGGGAAATCCAAATCAGCCTTGCCCGATCTGACGCGAGCCATTCAGCTTAAACCAGACTTCCTAGCTGCTCGGATACAGCGGGGAAATATTCTCCTGAAGCAGGGGAACACTCAAGAAGCCAGAGATGATTTCCAGGAAGTGTTGCAGCGCTCTCCAGGCACGGAGGAGGCCCATAGTCAGCTCCACAGAGTCGAGGAGCTGGAGCAGCTCCAGGAGGAGGCACATAAGGCCCATCACCGCGGCgattacaccaccaccatccAGGTGCTGGAACGGGTCATAGAGCTCTCTCCTTGGGATCCAGAATCTCGGGAGCTAAGAGCAGAATGCTATATCCGCATTGGGGAGCCAAGGAAAGCGATATTAGACCTGATGCCTGCGGCACGGCTCAGAACGGATAACCGAGCGGCTTTTCTCAAACTCAGCCGTCTGCTGTATGACCTGGGAGAACACCATGAGTCACTCAGCGAGATCCGGGAGTGTCTGAAGCTGGATCAAGATGATAAGGAATGTTTTGGTCACTACAAGCAAGTGAAGAAGCTTAGCAAACAGCTGGACTCTGCTGAGGAACTGATCTCAGAACAGCGATATCAAGAAGCAATTGAAAAGTATGAGTCTGTAAAGAGGACAGAACCAAATGTTCCATTCTACACTAGCAAAGCAAAGGAGAGGATCTGCTTTTGTCTAGTGAAGAATAAGAAGGCAGAAGAAGCAATAGACACGTGTTCAGAGGCCCACCAGAGAGACCCTCAAAATATTCACATCCTCCGAGACAGAGCCGAGGCCTACATTCTGCTACAGGACTACGAGAAAGCTGTGGAGGATTATCAAGAGGCACGGGAGTTTgaccaggagaatcaggagatTCGTGAGGGTCTCGAACGTGCACAGAAACTCCTGAAGATATCACGTAAAAGGGATTACTACAAAATCCTAGGAGTGAGCCGGACTGCTAACAAACAGGAAATCATTAAAGCATATAGGAAATTGGCACAGCAATGGCATCCGGACAACTTCCAGtctgaagaggaaaagaagaaggcTGAGAAGAAGTTCATCGACATTGCTTCAGCTAAGGAAGTTCTTACAGATCCAGAGATGCGTCAGAAATTCGACTCAGGAGAGGACCCCTTGGACCCCGAGAACCagcaaggaggaggaggaggaggaggaggctggCCTTTTGGCTTCAATCCCTTTGAGTCGGGTGGAAATTTCCACTTCAAGTTCCACTACAACTAATATGGCTATGCCATTGAATATGGTGGACATGATTATTATGGACAATGGACTGGACTTATTTAAAATCCCACAAAGGGAAATTAAGAAGAAATTCCACATATTCTTCAGATGACTCTTCTGTTGGCTCTTATCACACAGGGGTAGTTGTGTGCCAATTCAGACTTGAATATGCCGACTGTTGGATTTCTTAAGGAATCAGATGTTCTTGCGTGATTGAAAAATTTGTTTGCTTGACTGCGTGCAGTCAATGGCTGTGATGAATGAAGtcttatttagtatttttcaaAGCTATACCATTTCAGCTTTTTCAGCTGACTATCTCTGTGGGGTTTGCTTTTCCATCTAtgttccatctctctctctgtcacacacaagTCTTCTGTCCTCCCATTTTTCTCTAACTGAGTAGTTCATATTGGTGGGTTctgatttcagtataaaataagtgtgtctctgtgacactgaatgtttttaggGTTCAGTCCCAACACTCCAgactttattacattaaatcagtattgcactttttttgtgcatttaattGATTGGTATAGTTTGCAGGGttttacaatttcttttttgtagcccatttctgttaaacataatCAGATGTCAGTACATCAGACCACATCAGTTACTGAACGAATGGAGAACCTACAAGTCTAGTTCTTGCAATCAGtccaagattcaagattcaagaggtTAATTGTCATATGCACGGTGAAAACACAACGGTTTAGaccatacaatgaaattcttactttgCATGtctccctttaaaaaaaaaaaaaaaaaaagagag

Function

NR:

description
dnaJ homolog subfamily C member 3-like

GO: NA

KEGG:

id description
K09523 DNAJC3; DnaJ homolog subfamily C member 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936717.2 True 2697 mRNA 0.45 12 16356241 16366191

Neighbor

gene id symbol gene type direction distance location
cldn15a cldn15,LOC103041259,LOC108434589 coding upstream 278 16352761 ~ 16355963 (+)
fis1 fis1,LOC108434607 coding upstream 6840 16343344 ~ 16349401 (+)
mus81 mus81 coding upstream 46084 16299941 ~ 16310157 (+)
ovol1a LOC108267728,LOC108434587,LOC103038355 coding upstream 57520 16291819 ~ 16298721 (+)
LOC113539958 LOC108434586 coding upstream 71957 16278990 ~ 16284284 (+)
chd3 chd3,LOC107738011 coding downstream 5806 16371997 ~ 16418930 (+)
si:dkey-19b23.8 LOC108268122,LOC108434612,LOC103044025,LOC107683552,LOC107707061,LOC105907161 coding downstream 94400 16460591 ~ 16465228 (+)
zpax4 LOC108268120 coding downstream 104069 16470260 ~ 16490483 (+)
shroom4 shroom4,LOC107588210,LOC104951873 coding downstream 239505 16605696 ~ 16648129 (+)
cskmt mettl12 coding downstream 287630 16653821 ~ 16655884 (+)
G65335 znf638 non-coding upstream 125126 16223418 ~ 16231115 (+)
G65199 NA non-coding upstream 292780 16062088 ~ 16063461 (+)
G65184 NA non-coding upstream 301096 16019857 ~ 16055145 (+)
G65170 NA non-coding upstream 354780 16001155 ~ 16001461 (+)
G65115 NA non-coding upstream 485470 15869198 ~ 15870771 (+)
G65382 NA non-coding downstream 25938 16392129 ~ 16392363 (+)
G65395 NA non-coding downstream 64270 16430461 ~ 16430686 (+)
G65495 NA non-coding downstream 65754 16431945 ~ 16442900 (+)
G65542 NA non-coding downstream 148446 16514637 ~ 16514841 (+)
G65580 NA non-coding downstream 203496 16569687 ~ 16577737 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other upstream 37075 16310213 ~ 16319166 (+)
LOC113540079 sh3tc1 other upstream 316257 16023194 ~ 16039984 (+)
zgc:194930 LOC108268002 other upstream 1697305 14632030 ~ 14658936 (+)
brms1 brms1,LOC108268191,LOC108428539,LOC107661966,LOC107721670,LOC107661087,LOC105894187,LOC107583285 other upstream 2086901 14255744 ~ 14269340 (+)
gc2 LOC108267421,LOC108412585 other upstream 2636787 13705417 ~ 13719454 (+)
LOC113540582 cyb5d1,LOC108267266,LOC108434590,LOC107738084,LOC107683579,LOC106577649,LOC105907155,LOC107595290,LOC107707052,LOC107702060 other downstream 1765 16367956 ~ 16370957 (+)
arrb2b arrb2,arrb2b,LOC108434652,LOC108267683,LOC105904870,LOC101076921,LOC107750580,LOC107593814,LOC107561939 other downstream 969306 17335497 ~ 17401388 (+)
LOC113539940 NA other downstream 1243301 17609492 ~ 17620079 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other downstream 1633967 18000158 ~ 18010962 (+)
frem1a frem1 other downstream 1747242 18113433 ~ 18143631 (+)

Expression


Co-expression Network