cldn15a (cldn15,LOC103041259,LOC108434589)


Basic Information

Item Value
gene id cldn15a
gene name cldn15,LOC103041259,LOC108434589
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16352761 ~ 16355963 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936718.2
agagagagagagagagagagagaaggggagggcAAATCAGCCTCATAAATCATTGATCTGCTTGCTTTATACTCAGCATCTTGGTGAGAGTTTTCTCACAGGTGTGCGCTTGCTCCTCGGGATCAGCGGTAACAGGACATGTTCACACTGACACAGTGAAAAGTGAAGGACTAGGAGACAGGATTGCGGAGTAGAGTATATACATTTGCGAATACTGCCCCATTTGGCGCACTCAGAAAACAGCTAATGGATCCAATTGTTGAAGTGGTGGCCCTGTTGCTGGGGTTTTTGGGCTGGGTTATGGTGGGGGTCGCCATACCAAACCGCTACTGGAAGACCTCCACCGTGGACGGGAATGTCATCACCACCTCCACTCTGTATGAGAACCTATGGATGTCGTGCGCTACTGACTCGACCGGAGTGCACAACTGCCGAGAGTTCCCCTCCCTGCTCGCGCTCTCTGGTTATCTTCAGGCATCGAGGGCTCTTATGATCGCCTCTGTGGTTCTCGGCACATTTGCCCTGGTTGCCACACTCATAGGCATGCAGTGCTGCAAAGCAGCTGAAAACAGCCCTTCTCTCAAAGGCAAGCTTGCTGGAACCGGAGGTGTCTTCTTCATCCTACAGGGCTTGTGCACAATGATATCTGTGTCCTGGTATGCGTTCAACATCACCCAGGAGTTCTTCAATCCACTTTACCCAGGCACAAAGTATGAGTTAGGAGAGGGATTGTACATTGGATGGTGCTCTGGGACTCTTGCCATCTGTGCTGGAGTGTGTCTAGTGTTTTCCTGCAAAACTAACACAGATGAAAAGCCtgcGTATACATATCAACCCTCCAGAGGAACCATATACTCTACAGGAGCAGCATCGAGGAGAGATGCTCCAAGCACTTATGACAAGAATGCATACGTCTGATAAATGATCAAACAGACAGCCAGACCAGTACAGGTCAATTCAGTGTGAAAAATGATAAAGACCCCCAGCTTGTTCATTTGTTCAGAgtgcaaatatgtaaatatgtagacTTGTACAAGACTTGGAAGCATTGTATATTAGTTGGAATCAAATTGTGAAGCTGTGCCAATTTTATGCCAATACTTGAAGCAACTCAACTTAGAGAATACCTGAGTTATTTTTAAACccacatattttaaaatctgttataCAGAAATGCCTTGAAATAATGCTACTTTTATAcaaattttgtattattttaaattacacattCATATTTACAATGTACAGGAATACTGATGcttttttatgtgattttgtaAAAGAACAGTTGTTCACAGTATAGATGAAGAATCTTGATTGAATTATTTGTGATATTTATAATTACCTGACACATTCACATGAATGAAGGTCAAAAATTCATATTGATTCTGAGTGTTTCTGTCCTATTTTACAGCTACaagtgtgaaataaatgaaaaacaatgtcTTATA

Function

symbol description
cldn15 Predicted to enable identical protein binding activity. Predicted to be involved in bicellular tight junction assembly and calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules. Predicted to be located in lateral plasma membrane. Predicted to be integral component of membrane. Predicted to be active in bicellular tight junction and plasma membrane.

NR:

description
claudin-15-like

GO:

id name namespace
GO:0048546 digestive tract morphogenesis biological_process
GO:0035148 tube formation biological_process
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K06087 CLDN; claudin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936718.2 True 1451 mRNA 0.43 5 16352761 16355963

Neighbor

gene id symbol gene type direction distance location
fis1 fis1,LOC108434607 coding upstream 3360 16343344 ~ 16349401 (+)
mus81 mus81 coding upstream 42604 16299941 ~ 16310157 (+)
ovol1a LOC108267728,LOC108434587,LOC103038355 coding upstream 54040 16291819 ~ 16298721 (+)
LOC113539958 LOC108434586 coding upstream 68477 16278990 ~ 16284284 (+)
si:dkey-9k7.3 LOC108267726,LOC108434601,LOC103037388,LOC105895467 coding upstream 75267 16264254 ~ 16277494 (+)
dnajc3b LOC108267637,LOC108434608,LOC107707053,LOC107683555,LOC107702051 coding downstream 278 16356241 ~ 16366191 (+)
chd3 chd3,LOC107738011 coding downstream 16034 16371997 ~ 16418930 (+)
si:dkey-19b23.8 LOC108268122,LOC108434612,LOC103044025,LOC107683552,LOC107707061,LOC105907161 coding downstream 104628 16460591 ~ 16465228 (+)
zpax4 LOC108268120 coding downstream 114297 16470260 ~ 16490483 (+)
shroom4 shroom4,LOC107588210,LOC104951873 coding downstream 249733 16605696 ~ 16648129 (+)
G65335 znf638 non-coding upstream 121646 16223418 ~ 16231115 (+)
G65199 NA non-coding upstream 289300 16062088 ~ 16063461 (+)
G65184 NA non-coding upstream 297616 16019857 ~ 16055145 (+)
G65170 NA non-coding upstream 351300 16001155 ~ 16001461 (+)
G65115 NA non-coding upstream 481990 15869198 ~ 15870771 (+)
G65382 NA non-coding downstream 36166 16392129 ~ 16392363 (+)
G65395 NA non-coding downstream 74498 16430461 ~ 16430686 (+)
G65495 NA non-coding downstream 75982 16431945 ~ 16442900 (+)
G65542 NA non-coding downstream 158674 16514637 ~ 16514841 (+)
G65580 NA non-coding downstream 213724 16569687 ~ 16577737 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other upstream 33595 16310213 ~ 16319166 (+)
LOC113540079 sh3tc1 other upstream 312777 16023194 ~ 16039984 (+)
zgc:194930 LOC108268002 other upstream 1693825 14632030 ~ 14658936 (+)
brms1 brms1,LOC108268191,LOC108428539,LOC107661966,LOC107721670,LOC107661087,LOC105894187,LOC107583285 other upstream 2083421 14255744 ~ 14269340 (+)
gc2 LOC108267421,LOC108412585 other upstream 2633307 13705417 ~ 13719454 (+)
LOC113540582 cyb5d1,LOC108267266,LOC108434590,LOC107738084,LOC107683579,LOC106577649,LOC105907155,LOC107595290,LOC107707052,LOC107702060 other downstream 11993 16367956 ~ 16370957 (+)
arrb2b arrb2,arrb2b,LOC108434652,LOC108267683,LOC105904870,LOC101076921,LOC107750580,LOC107593814,LOC107561939 other downstream 979534 17335497 ~ 17401388 (+)
LOC113539940 NA other downstream 1253529 17609492 ~ 17620079 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other downstream 1644195 18000158 ~ 18010962 (+)
frem1a frem1 other downstream 1757470 18113433 ~ 18143631 (+)

Expression


Co-expression Network