LOC113540311 (LOC108267981)


Basic Information

Item Value
gene id LOC113540311
gene name LOC108267981
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 10095779 ~ 10106529 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936742.2
AAGTTGTCTCTGCTGCTGCATTACATCCGGATGCAAGTGAGAAACAAACAAGCGGTGGTCAAAAAGttataatattttcattcagtatGTCAGACTATCAGTATGCTGTGCTTTTCGAGGCAAACAACCTCTCAGatggagaaatgaaaaagattaGAAACTATTTTAAGATCAGGCGGCAGTCTGGAGGCGGAGAGTGTGGAGAagtggaaaaagtggaagaCAACACCTACAAGATAAGCTTCTCGGACAAAACAGcacagGACAGAGTATTAAGCAAAAGTGATCATGTAATCAATCTCCCTGGACGAGGAAATGTACACATCCTGATAAAACACCATGACATTAAAGAAGAGAAACAGCTTCTACCACATTCCACATCCGATCAACAAgcCACTGGGGACACACCTATGCAGAAAGTTTTTAAACTAGACCCATACTTACTGCACTATCTGAAAGACAATTCAAGAGCAAAGTCAGATTTGGAGGAACAGCTCTCCTCTTTGCTAAGCACCTTTAAGTTAGACATGGTCACTGAGGCAGTAGTGGTAATGAGGGATGCAGTCCAAACAGGTCAATATGATGTTGTCCAGCAGAAGTGGGAAGCAAAGGTGGATTTATTGTTCTCGGACCTACAGCATCGGTATGCCATCCATTTTGAGGTGGATCCTAAGAGGTTAGAGATTCTACAAAAAAACCCTTTCCTATTGTCACAAAACATTGGAATCTATGAAGAAAGTGGTTTATCTGTGATTGTTGGAGAAAATAAGGAAGTGGAGAGGTTTTTTAAAGTTATAGATGCTTTGCAGTTGCAGCAGCAAGCCCGTAAAAAAGAATGCCCCGTGTCTGAGACACAATATGAACTTGTGAAAGAGCAGTTTCAACAGGAGATAAAGTCAAAATTTTCAAAGATCGAGATTACACAGGAGCAACCTGGCTGTCTTGTCTTAAAGGGTCCTGAAGAACAAGTCCATTCAGCAGCAACAAAGCTTAAAGAGTTGCTGAATCAGATTCAAGAGAAAAGAATCCCACTGCCTCATCCCCTCAAAGCATTTTTGTCATCCAGTGGTGCTATTCAGATCTTTCAGACACGATTTCAGCAGAATCTCTGCAGTCCGGTCTTGCTTGAGGCCACAGGATCCAGCTCAGATTTGGTTCTGCTAAGTTTGTCCACAGGCGCACTTCAGGAAGCAGCAACTGCAATACAGAGAGACCTGTGTGTGGAGACGGTCCTGCTGGAGCAAGCTGAATCTGAGTCACCAGGAATAGATACTTTGAAGGAGGCTCTGAGTCCTGCATTACAACAGGCTAATCATGGAACTTCTAAAGTGGAACTTAGCTACGTGCCAGGGCCAGGGTCTGACCCCAGAATGAAGGCACAACTGGTGGGCTACAGCACTGaagtcaataaattaaaaaatattatacaggAATTCAAGCAAAACTATGTGGAATACAGTGACACTGTGCCACTACCATTAGCAGAACTGGGGGATAATTTCTCTAAACTTCTGTCACTGCTAGGTGTGACAGCAACTGATGTAAATCTAATGGCTACATCCTCACCTGTAGCATGTGTCTACCTCTCAGGACCTCGCTGTAAAGTAAttgatatgaagaagaaactgCTTTCATCATTTAGCCATCTTATATGTCAGAAGATTTCAGTGGATGGTCCTGGAGTCATGCAGTTCTTTCAAGAGGAAGGTCTAAACACACAAGAATTATTGCAGAGCTCCTGTCAGGTTCTAATATCCCTCAAAAACAATGTCCAAACAGGTGCTGCAACAGCCAGAAACACAGCCTTTACCAGTCTCCCTGCCATACCTGCTTCTGTGTCACTTCCAAGTTACTCTGTGGCCCTGGAAATTGTATTTGGAGGTCTTGAAGATCAGCAgGCTGATGTACTTGTTGCCCCCATGCTGAATACAAACTTGACCTCAACTAATGTTGGGAAATCCTTGCTAAATAAAGCAGGGCAGCAGTTTAAGAGTAATTTTGATGCTGCCAAAGGAAGATGCAGAATTACTCCTGGAGATGTGCTGGAGGTAGATGGGGCTCCATTAGGGTGCCACAAGGTCTTCTTTATTGAGTGTGTACCTTGgattggaaacacacacagcagtgaaaaGGCATTACGCTGTGGACTTCAACGAGCTCTGGCAATTTGTGAACAGCAGGCATGTAGCTCAGTCGCTTTTCCTGTAATTGGACCCGGCGTGGCACTGGCTGTACCCGTACAAAATGCCGCTAATATTCTGACAGGAGAGATTGGGACTTTTGGCCTGACTGGATCCATTAGTACTCTCAGGACCATACGAATTGTAATAATGCCTAATTATCCAGATTCTGAAGAGATTTACCTGGCAGTCAATACTGGGTTAAATGCAATAATGGTGGATCATACAGGACAGGCTGCCTTTCAGTCTCTAAGCTCTGAAATTGATGAAATCACCATCCCAGTGGCCAGGTGTCAGCTCCATCTGATATTTGGAGACATCAGCAATGAGACTACAGATGTCATTGTAAACACCACAGACTTTACTGACTTACAAACAGATGTGTGCAATGACATCCTGACTATTGCTGGACCACAAGTCAAGGCTGCTCTAACAGGAGTGCAGGTAAAGAAAGGAGAAATCTTTATCACTCAGCCTGGAGAATTCCCCTGCAAGGCGattatgcatgtgtgtggagAAAAGGATACAGATGTTATTAAAAAACTGGCACGAGATATCCTGCTCAAATGTGAGCACAGTGGCTACCAGTCAGTGGCCATTCCTGCTATTTGTGCTGGTAAAGGAGGGTTAGATGCCCGTCTGGTGGCCCAGGCTATTCTCCAGGGTGTGAAGGATGCTACAATACAAACTAACCTCAACAATGTTAAAAGAATTCACATTGTTTTGATGAAAATCCATGTTTTTTTGGAGTTCAAAGCAATGGCACAGCAGATCTTTGGCAGATTTACCCAGATGACAGCTCCTTTGCTGTTCACACCTCTCAGACCTGCTCCATCTTCTTTGACCCTAGACCTTAGCTCtcttgttcagtctcttccaGACCAGCATGTCACAGCTGAATTTCTTGTAGTGGGGTTAAATGGTGATAATGTCTCAAGGGCCTGTCGAGAGCTTCATCAAGCATATAAAAGCCACTGCTCTTCTCATTTTGTTTCACAAGAGGAACTTAAACACTTCACTCCAGCTGAGGTGGATGATATTATCAGTAATGTGACTTCTCTGGGTATTCGGATAAGCCAACGTGGCCCTGATGGGTTGGAAGTTAGTGGACTGACAAAAGGGGTAAATGTGTTCACACAACTAATACGAGAGGCTCTTGTCAGGCAGgttagagagaaagaacaggaTGCAGTTTTTTCCCGTGTCAGCTGGTGTATTTTGGGATTAAGAGGAACCTGGGAGAGGTTACCTAAAGAGGCTCATCATCAGCTGGAAAACAAGAATGTTGGTGGAGGGATACTGgatgcaaaaacacaaaaatggacAGTAAATCTTACAAAGATGAAGGCCACAGCAATTGGATCTACAGTTGTGGCAAAGATCAAACGACTGGAGAACTTATCAGGTTTTGATTTTCCACTTTACTGGGACAGCATGACCACAGGGGAGGTTCTAAAGGTGGTTCCTCTGCACTCCAGCTCTGCTGAgtacaaaaaagtgaaaagtgactTCAAGAGAACAGTCGCAAAAGCAGTTGTCAAGATTGAACGCATTCAAAATGTGAATCTGCGCCGGGCCTACGAAGTTCGTAAGAAAGAGCTGCAGAATAAGAATGGGACAGTTGGGGCAGGAGAGAGAGTCCTATACCACGGGACCACAGCTGATGCCTGCGCTTCTATACAGCGCAGTAACTTTAACCGCAGATTTGCTGGACAAAACGGAACCATGTATGGACTCGGGACATACTTTGCTGTGAATGCCAGCTACTTGGCCAATCCCACGTACTCTGCACCTTCCACAGATGGGACACAGCTCATGTTTGTGACACTTGTACTAACGGGTCATTACACCCAGGGAAAAGGTGACATGGTGGTTCCCCCTCCTCGCTCATCACAGGATCCTAATGACAGATTTGACAGTGTGGTCAACAACATGCAGACACCCAGTATGTTTGTGGTGTTTCATGACTGCCAGGCCTACCCAGACTACCTCATCACATTCAAATGAGGGCACAGCTGTAGCTCCTGGCTAGATTCAGTATAAACTCCagtgtttttaacaaaagaCCTAATCACCAGGAATATGCCAGGTTTAAAAAGTAACCCTATAGAGCATATTTTTCTACTATCAGCTGGGCTAAGAGTGGTCCTTGGGATTAACAGTAGGCCTGTCTGTGCTGACTGAAGTGCTTAATGCGGACTATATTGCTTCAGGAGATCAACAGGATATCCCACAGCTAAACAATTCAGACGTTTAAACATCATATTCTGCAGCAAAGCTAAGACTaaatctttacacacacacaagcctaatcctgaaatgaaacattattaGATTAGGTGCATTTGTCACCATGTGTCTGTGTCCCCATAATTTGTCCATTACCTTCAGACTGTTTAAATGGACATGATAAACCCCCATCATTTTGATTTCACTTAGCATCAACAGAGCAATGCAGGAGTTAATATTAAACTTCTTGggccaaatattaaataattaattttcttaatcAGTGGAAAGCAATCTGTTATGAATTACATATTAAATGGGTGTGTTATTTCACAAAGGTCATATATGTATActtcttatttctgtttatgaCACTAGGAAGAAGTACCTAAGACTGCAGTGATTGCTAcagtacctaccaaaaatgATTCCCATGGCAATTCTGTAGGGCAAACTGTGTCTCTCAATACGCATCAAAAAGTTATTTGATGTAATATTTCACCCATTTTCATTGGAGCTGCCCCCATATTTCTCAATTCTATAACTACAAGATATGTATTgatattgtactgtatgtaggcATAAAAAATTATAGCAAGTTCAGACAAGAGCTGAGAGTGTTTCACTGAAGTAGGTTTCAGTGTGTTCAGCCaacaatttatttgtgtttattcaccGGTAAAACCTTCAAAGCCTATATGGAattattatcatatcatatcatattatgcAATTATCACATTATCATGCATTGTACATTTTACTAGGgtcataattataaatacagtTTCACATTAGGACAGTAAAAACAATCTTTAGTTGCCAATATTTAGTTGTTGGAGGTTTTTGTTCCTTATGTATACAcaagattaataaatgtaagAGTTTTCTCTGTGATATAA

Function

NR:

description
PREDICTED: poly [ADP-ribose] polymerase 14-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936742.2 True 5311 mRNA 0.42 15 10095779 10106529

Neighbor

gene id symbol gene type direction distance location
LOC113540363 NA coding downstream 663 10093747 ~ 10095116 (-)
trmt10b trmt10b coding downstream 42565 10046572 ~ 10053214 (-)
intu intu coding downstream 72002 9997315 ~ 10023777 (-)
aadat aadat,LOC102781018 coding downstream 102912 9980997 ~ 9992867 (-)
mfap3l mfap3l coding downstream 115113 9972383 ~ 9980666 (-)
LOC117597105 LOC108267929 coding upstream 4633 10111162 ~ 10143429 (-)
LOC113538503 LOC108261535 coding upstream 61388 10167917 ~ 10189928 (-)
LOC113547269 NA coding upstream 125145 10231674 ~ 10236612 (-)
LOC117596978 LOC108267983,LOC108267929 coding upstream 202122 10308651 ~ 10320200 (-)
LOC113540334 LOC108267980 coding upstream 226940 10333469 ~ 10344131 (-)
LOC113540700 NA non-coding downstream 54000 10041567 ~ 10041779 (-)
LOC117597227 NA non-coding downstream 55085 10040482 ~ 10040694 (-)
LOC113540709 NA non-coding downstream 56192 10039380 ~ 10039587 (-)
LOC113540720 NA non-coding downstream 57013 10038554 ~ 10038766 (-)
LOC117597222 NA non-coding downstream 58422 10037145 ~ 10037357 (-)
LOC113540369 LOC108267738,LOC108267937,LOC108267740,LOC108267931,LOC108267932,LOC108267929 non-coding upstream 95702 10202231 ~ 10211232 (-)
G62108 LOC108267978,LOC108411458 non-coding upstream 257483 10364012 ~ 10364892 (-)
G62109 LOC108267978 non-coding upstream 261792 10368321 ~ 10370563 (-)
G62125 NA non-coding upstream 368241 10474770 ~ 10483928 (-)
LOC117596989 NA non-coding upstream 390992 10497521 ~ 10499087 (-)
LOC113540372 NA other downstream 15542 10078688 ~ 10080237 (-)
cxcl19 LOC108267987 other downstream 22550 10070406 ~ 10073229 (-)
G61900 NA other downstream 54013 9605727 ~ 10041766 (-)
G61972 actn3,LOC106577856,LOC106608893 other downstream 290461 9776278 ~ 9805318 (-)
G61537 NA other downstream 757034 9337826 ~ 9338745 (-)
trnan-guu_9 NA other upstream 380139 10486668 ~ 10486741 (-)
trnan-guu_10 NA other upstream 383819 10490348 ~ 10490421 (-)
trnan-guu_11 NA other upstream 385061 10491590 ~ 10491663 (-)
trnan-guu_12 NA other upstream 388636 10495165 ~ 10495238 (-)
gba2 gba2,LOC107749818,LOC107741462 other upstream 431716 10538245 ~ 10562006 (-)

Expression


Co-expression Network