pik3c3 (pik3c3,LOC107691920,LOC107562280)


Basic Information

Item Value
gene id pik3c3
gene name pik3c3,LOC107691920,LOC107562280
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 10574923 ~ 10595122 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936745.2
CAGGCTCTGTAGACAAAAGAAGTGGTTTCCGATCAGCCCGATTGTATGTTTTAAACGCCACTCCGATGGAGCGATTGGTATCGATTGCTTTTGCCTGATATAtgatttttgttgtgttttcttcgGAAAACGCACTATGGATATACACATATTGACTCAGACTTTGTCCCTGCAGTGATTAGTTGTTACCAAAGCTGTTGCCACACTGATGTTTTTATAAACAGTGATTTTGTGCAGTGTGGGACTTTATAGAAATAAACCCAGCAGTCATTCTGCTGAGCTGGAAGCCACCCTCAGTGCAGTGCAGTACAGAGGGCTTTCTCTGGCAGGCCTGCTGCTCTGACACCTCTCAACTCTTCATTTACATTCTTTATagtattgtttgtgtttgtatttttttaaatcgttGTAGAAGTGGCTGGAGATGGATACGGACAAGTTTAACTATGTTTACAGTTGTGACCTGGACATAAATGTCCAACTGAAAATAGGTAGTTTGGAAGGCAAGCGGGAGCAGAAAAGCTACAAGGCTCTGCTTGAAGACCCGATGCTGCGATTCTCTGGCCTTTACCAGGAGAACTGCTCAGACCTGTATGTTACCTGCCAGGTGTTTGCAGAGGGGAAGCCACTAGCGCTGCCTGTTCGTACGTCCTATAAAGCCTTCAGTACCCGCTGGAACTGGAACGAGTGGTTGAGATTGCCAGTAAAGTATCCTGACCTGCCACAAAATGCTCAGGTAGCTCTGACTGTGTGGGACGTTTATGGGCCAGGACGTGCCACTCCTGTAGGGGGCACCACAGTCACCCTTTTTGGGAAATACGGAATGTTCCGGCAGGGCATGCATGATCTGAAGGTGTGGCCGGGGGTGGAGGGTGATGGTGGGGAGTCCACATCGACACCGGGCAGGACCAGCAGCACTCTGTCTGAGGATCAGATGGGCAGGCTGGCTAAGttgACGAAGGCTCATCGTCAGGGGCACATGGTGAAGGTGGACTGGCTGGACCGGTTGACCTTCAGAGAGATTGAGATGATCAATGAGAGTGAGAAACGTAGTTCCAACTTCATGTACCTTATGGTGGAATTCCCTCGAGTCAAGAGTGGAGACAGAGAATACAGCATAGTTTACTATGAAAAGGATGGAGATGAAGCGTCCACTCTACTGACCAGTTCAGACATAGTTAAAGTCCCTGATCCTCAAATGTGCATGGAGAATCTGGTGGAGAGCAAACACCACAAATTGGCTCGGAGTCTGCGGAGTGGACCATCTGACCATGACCTGAAGCCCAATGCTGCCACCAGAGACCAGCTCAACATCATCGTCAGTTATCCTCCCACCAAGCAGCTGACCTCTGAGGAGCAGGACCTGGTGTGGAAGTTCAGATATTACCTCACCACTCAGGagaagGCCCTGACTAAGTTCCTGAAGTGTGTGAACTGGGCTTTGCCACAGGAGGCAAAGCAGGCACTGGAGCTGCTGGGGAAGTGGAGACCCATGGATGTGGAGGACTCACTAGAGCTGCTCTCGTCTCAATTCACCAACCCCACAGTCAGACGCTATGCTGTGGCCCGTCTGCAGCAGGCTGATGACGAGGATTTGTTGATGTACTTGCTGCAGCTGGTTCAGGCTCTGAAGTATGAGAATTTCAATGATATCCAGGGTGGTCTGGATCCTGGCAGTAAGCGGGACAGCCAGGGCCTGTGCGAGAGCACCACACTGGGTGATTTGGACAGCTCCCAGATAACCTCGGCTGCTATAGCAACCACCAGCACACAGAAAGGCAAAGACGGGGCAGATGGAGAAAATCTGGAGCAAGACCTGTGTACTTTCCTCATATCGCGTGCCTGCAAGAACTCGACACTAGCCAACTACTTGTACTGGTATGTAATAGTGGAGTGTGAGGACCAGGACACACAGCAGAGAGACCCAAAGACTCACGACATGTATCTGAATGTAATGAGGCGATTCAGCCAAGCTCTGCTCAagGGTGATAAGAATGTGAGAGTGATGCGCTCTCTGCTCGCAGCACAGCAGACATTTGTAGACAGACTCGTGCAGCTTATGAAGGCTGTTCAGAGAGAGAGCGGCAATCGCAAGAAAAAGACGGAGAGGCTGCAGGCTCTGTTGGCTGATAATGAGAAGGTGAGTCTGTGTGAGATCGATCCCATCCCTCTCCCTCTGGAGCCCCAGGTGCGCATCAGAGGCATTGTACCAGACACTGCCACGCTATTCAAGAGTGCTCTGATGCCAGCTAAGCTGATCTTTAAGACTGAAGATAACGAGCTTTATCCTGTGATCTTTAAACATGGTGATGACCTGCGACAAGATCAACTCATCCTACAGATCATCTCACTGATGGACAAGCTGCTAAGGAAAGAAAATTTGGACCTAAAGCTGATGCCATATAAAGTGCTGGCCACCAGCACCAAACATGGTTTTATGCAGTTTGTACAATCAGTTCCTGTGGCAGAAGTTCTGGCAACTGAAGGCAATATTCAGAGTTTCTTTAGGAAACATGCCCCTAGTGAAAAAGGACCTTACGGCATCAGCTCTGAGGTGATGGACACCTACGTGAAGAGCTGTGCTGGCTACTGCGTCATCACCTATATCCTCGGAGTTGGGGACAGACACCTGGACAACCTGCTTCTCACCAAGACTGGAAAGTTGTTCCATATTGATTTTGGCTACATTCTGGGGCGGGACCCCAAACCACTGCCTCCTCCGATGAAACTGAGCAAGGAGATGGTAGAGGGCATGGGGGGCATGCAGAGTGAACAGTACCAGGAGCTTAGGAAACATTGTTACACAGCCTTCCTGCACTTgcgcagATATTCAAACCTCATTTTAAACCTGTTCTCCCTCATGGTGGATGCCAATATTCCTGACATCGCACTTGAACCTgataaaacagttaaaaagGTGCAGGATAAGTTCAGATTGGACCTGTCAGATGAGGAGGCGGTGCACTACATGCAGAGTCTTATAGATGAGAGTGTGGGAGCTCTGTTTGCCGCCGTGGTggaacaaatacacaaatttgCCCAGTACTGGCGAAGGTGAGGAGACACATTGGTGCCTGAAACGTGTAGCTGGACAGACCCTGCCACAGTAATTAAAGCAAGATAGAACAAATGAAAGTGGAGGAGAGGCAAGACAGAGGGGTgccaagagtgtgtgtgcggcGTCATCTTGAGATACTTATATAAGGAAATAACTCACAATTgggtgtgctgctataggaaaataatcagcgacagaGTGATGAGAAGCTGAGTTAGTATCCCCCCCttcccgaagttgattattttcctataacagcatgttccaaagtattttagtcctcttataccacagcaatttgccagtgatgtttaataaacatttgtAGTTAATGTTGTTGTacatctatgaaacaagttagttcctgttattacttacattatagcagctataagcagtcgttCCCtaaccagtctctctttttctctctcctctaaagaaacaataatgcatcagaacaagcgcattcatataaatctgtgatttcaTATACGGAtggaactactatcagagctgctgttagaaaatttaacaacactgtggtataactgCAGTTCATTTAATGCAAATGGAAGGATAGTAAGTTTATAGCTAAGTTATATATGCTTGTTATATATGATTGTTATATATGATTGTTCTGTACAATGAACTAAAACAGtgaacatttaatataaaatgatttgagTGACATGTCTACAGTTTATGAATAAGAACCAtcaaatatttcacaaaattgGTAGAGCTGTTgctgcacttaaaaaaaatgctttattataATAAAGATATGGACCTCATATAAGCTACAGAGCAGTTTCTGATCAGCTTATCCTCTTAGTCTCTTCGTCCTCTGCAACATGTTTGAATCAGACGCTGTATGTGTCTTTGAGCTGGCACTGAATCACAGTGAGTCAGTCTACTGGCAGAAAGAATATTCAGAAGCATGTACATATTGTTAAaggtgaaaaatatatattttttaaaaattatataaaataatgaacatccAACTGTTCATGATTTTGCTCACACCTGTATCAGATATTTGGCATTCttgattttattaatgtttaatattttatatatttcttatttaacattatattattatattattcagaGGGTTTTCTCACTCATGTTCACCCTTTTTGCCATCAGTCTCTAGCTCTTACTCGCTTGCTCTTGTTTTTCAgcatgtgtgtttcagggttGTGGGTTGTGGCTTTATTAAAGCAGCACATATTTTTCCTGTCA

Function

symbol description
pik3c3 Predicted to enable 1-phosphatidylinositol-3-kinase activity. Predicted to be involved in several processes, including autophagosome assembly; phosphatidylinositol-3-phosphate biosynthetic process; and phosphatidylinositol-mediated signaling. Predicted to act upstream of or within phosphorylation. Predicted to be part of phosphatidylinositol 3-kinase complex, class III, type I and phosphatidylinositol 3-kinase complex, class III, type II. Predicted to be active in several cellular components, including endosome; peroxisome; and phagophore assembly site. Used to study inflammatory bowel disease. Orthologous to human PIK3C3 (phosphatidylinositol 3-kinase catalytic subunit type 3).

NR:

description
PREDICTED: phosphatidylinositol 3-kinase catalytic subunit type 3 isoform X1

GO: NA

KEGG:

id description
K00914 PIK3C3, VPS34; phosphatidylinositol 3-kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936745.2 True 4309 mRNA 0.45 25 10574923 10595122

Neighbor

gene id symbol gene type direction distance location
rgp1 rgp1,LOC107741481,LOC107668635,LOC107588171,LOC107691996 coding upstream 5439 10562232 ~ 10569484 (+)
trnak-cuu_21 NA coding upstream 9199 10565653 ~ 10565724 (+)
trnak-cuu_12 NA coding upstream 90406 10484444 ~ 10484517 (+)
LOC117597108 NA coding upstream 90776 10482489 ~ 10484147 (+)
trnak-cuu_11 NA coding upstream 91637 10483214 ~ 10483286 (+)
faah2b LOC108267965 coding downstream 40583 10635705 ~ 10644751 (+)
nat8l nat8l,LOC107691926,LOC107741469,LOC107562319,LOC107753918,LOC107588165 coding downstream 84135 10679257 ~ 10689652 (+)
ptgr1 ptgr1,LOC108267959,LOC107588162,LOC107753922,LOC107668743,LOC107691929,LOC107562349 coding downstream 159755 10754877 ~ 10760025 (+)
si:dkey-11k2.7 ptgr1,LOC108440055 coding downstream 168453 10763575 ~ 10770209 (+)
txn NA coding downstream 176325 10771447 ~ 10775236 (+)
trnak-cuu_20 NA non-coding upstream 43395 10531456 ~ 10531528 (+)
trnan-guu_13 NA non-coding upstream 43879 10530971 ~ 10531044 (+)
LOC117596986 NA non-coding upstream 68446 10499275 ~ 10506477 (+)
G62131 NA non-coding upstream 77563 10497130 ~ 10497360 (+)
G61842 NA non-coding upstream 215959 10357814 ~ 10358964 (+)
LOC117596985 NA non-coding downstream 220628 10815750 ~ 10816552 (+)
G62373 NA non-coding downstream 269533 10864655 ~ 10864861 (+)
G62416 NA non-coding downstream 311903 10907025 ~ 10910142 (+)
LOC113540371 NA non-coding downstream 425011 11020133 ~ 11022796 (+)
G62549 NA non-coding downstream 581907 11177029 ~ 11193851 (+)
trnak-cuu_19 NA other upstream 79453 10495398 ~ 10495470 (+)
trnak-cuu_18 NA other upstream 83054 10491797 ~ 10491869 (+)
trnak-cuu_17 NA other upstream 84273 10490578 ~ 10490650 (+)
trnak-cuu_16 NA other upstream 85487 10489365 ~ 10489436 (+)
trnak-cuu_15 NA other upstream 86711 10488140 ~ 10488212 (+)
c4h4orf48 c7h4orf48 other downstream 62235 10657357 ~ 10663411 (+)
LOC117596972 LOC108267738,LOC108267932,LOC108267931,LOC108267739,LOC108267937,LOC108261673,LOC108267938,LOC108267933,LOC108267935,LOC108267740 other downstream 995593 11590715 ~ 11605230 (+)
si:ch211-200p22.4 LOC108267499,LOC108434851 other downstream 1049779 11644901 ~ 11705336 (+)
si:dkey-112a7.4 LOC108268066 other downstream 1697369 12292491 ~ 12295133 (+)
tmem88b tmem88,bcl6b,LOC108267673 other downstream 2611535 13206657 ~ 13219859 (+)

Expression


Co-expression Network