lrp10 (lrp10)


Basic Information

Item Value
gene id lrp10
gene name lrp10
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 11146952 ~ 11157112 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936748.2
TACACGCGCCACGAACCAAGGGCGTAATTTACGTGATTGCGTCAGTGCAGTTGGCGTGGGCGGCCGCATAGCTGTAATCGGACCAATACGGAAGTGGCGGAGAGCGAATGTCAACAACGGAAAAAGACAGAGTAAAGATAAAATCATCCCACACGAGGCTTCTTGTCTGTGATCCCCTGTGCGCTGGAGAGCTCATGGATCTATTCAGATGAAGCCTTTATACCATGgacagtgatttatttttacttttcggtagatagaaacattttagatctCTGTGGAAAGAAAATCAACATGGATGTCCCGTACAGCCTGTGGATTTTTAGCCTTTTGTTTTTAACAGTCCACTGCAGTCTGGAGCTGGCCTCCAGTTCAGCACATTGTTTGAAATCATCAAAAATACTACAGGCAAGACAAGGAGAAATTCGTGGTTCCACCCGCCATGGCCCTCCTGGCCCTGTGAACTGCAGCTGGGTAATCACTTCCCCAGTGGGAGAGCGTGTGATTATCAGtttctctgAGTTTTTCATTAGATGTGGCTGGAGCTGGCTAAGTCTGACAACTGTTACAGGACGGCCCGTGTCGCTCTGTGGATACCAGATGCCTAAGCCAATGGAGTTCTATGAGGGAAACATTACAGTGACGCACCACTTTGTTCCTCACTTCTACTCAGTTTCAGGGTTCCACCTGTCATACATTAAAGACACTGGTCCGTGTTACCCGGGTGAGTTTGAGTGTTACAGTGAGCGCTGTCTTCCCATGTCCTGGCGCTGTAATGGCCAGGTGGAGTGCCTTGGAGATGGTGACGAGCTCGGCTCGGATGAGGAGGACTGTGACTCTGTTGAACCCCAACCTCATCTGGACAATGAGCCCTCACCATTACCAACTGAAATCCCAGCAAGCTCAGCTGTTAACTCTAAAATAGAGATGGGACATCTGCCACACGGGACGCCTGATCTCTCCTCTCCAGCACAGGGTGGGCCTTGTGGGGGGTATCTGAAGGCCTTTTATGGCTCTTTTGTCCCCCCTGTGCTGACGGGGGCagcaatggtgtgtgtgtggtcagtggACCCACAGGATTCCCGGCCTCTCAAGCTGGAGCTGCAGCAGCTGGCACTAGGCCCTAGAGACATCCTTATCATCACTGACCAGCCTTCTGGGGGTGGCAATGTCATTACAACTatCACATACACATCCAATTACAAAACAGTGGAGGTGGAGTCCCCTACTGGTCTGCTGTCACTAACCTATCGTGCACAGGAGGCCTCTGAGGGGCGAGGCTTCAATGCCACATACCGTATCGCTGATTACTGTCTGCCCTGGGAAGGTCTTTGTAAGGGCTCAGAAGGGGGCTGCTATACGCCGAAGCAGCGCTGTGATGGCCACTGGGACTGTGCAGAGACGGGCCTGGATGAGGATGGCTGTGGCGGATGCCCAGCTGGCTATTTTCCCTGTGGGACACTGGCACTGCAGAGGGCGGGGCACCTCGTAGGCCGGCCTGCCTGTTATTCCATCAAAGAGAGGTGCAACTACCAGCTGAACTGCGCTGATGGGAGTGACGAGAGAGAGTGCAAAGTGTGTCAGCCTGGCACATTCCACTGCGACAgcgacaggtgtgtgtttgagagctGGCGATGTGACGGGCAGGTCGATTGTAAGGATGGCACTGATGAACTAAACTGCACCGTGACTCTGCCTCGAAAAGTCATCACCGCGGCGACTGTGGGCAGCCTGGTGTGTGGTCTGCTGCTGGTCATTGCAATGGGCTGCACCTGCAAACTGTACTCACTTCGCACTCGAGAATACAGCTTGTTTGCCCCAATCAGCCGCCAAGAGGCAGAGTTTATCCAGCAACAAGCTCCGCCCTCCTATGGTCAGCTGATTGCTCAGGGAGTTATTCCTCCTGTAGAGGATTTCCCTACTGAGAACCCCAATGAgcccacctctctttctctgagagGACTGCTTCAGCTCATCAGACAGGACAACATCTCCTCCCCACGGCGAAGGCGCAGGCCACGTTTTGTCCGCCGAGCGATTCGACGCTTGCGCAGGTGGGGCCTAATTTCCAGACCAACCTCTAGATCTACCCAGACCACAAGCTCCACCACTCAACAGACAGAAGCTGCTCCTACAGGCCAGGAGCCCAGACAGTCTGGCCCTCCAGGCTCCGTGGGGCCCAGGGAAACCGCTGATCAGCCTTTGCCACAAAAAGTGGGGTTGTCCCAACAAACAGAGCAAGAACAACAAGCAGACGCACCACCTCCTCTTTCCCCgccccctcctcctccacctccacctacGACACTTTCCACAACTCCAGCTTCTCTCCAGCCAGCTGATGCTCCAGAAACACGTCAGACCCCTCCTGTCGCTGTTGCCCCCAGCAGCCCCTCCCTGGCCTCTCTCTTCCATTCTCTGGGGCTAAGTATCTCTCGTTTCAGACCTTCATCTTCCCCTACTGCACTTCCTCTCTCATCTTCCCcatctttttcctcctcttcctcagaaGACGAAGTGCTACTGATCCCTCTTTCTGATGATACAACCTCTGAGGATGATGTGCCCATGCTAACCTGAAATGAACTGCactctctttcacttttcttGTCTTTCTCACTTTCCCCCTGTTTTTCGCCTCTAAATTATGATCTCAGCATGTAAGCGGCATCATGTCTGCAGTCTGTGCTGGCAAGGTGCCTTATTTCACACGAATAGGTTAAATTTCCTGACTTAAATGTATCAAGTATTGGACAAATATCAAAGACTTTAGTCTCTGTGCTTGTTAGATGTGCACTTACTCAGAGATTGTGTGTGATGGAAGAAAATGTTGCACAGAAAATCTTCCTTGGCCTCTCTTtaatgagtgtgtttacatgcacaacCCGATGTCATCTTACTTCAGCATATTCAAGTTGTTGTGCAAACAGCACACTACAGTATCATAAATTAGATTAAAGAGGACAGTTCTGCCTGGATTTTAGCCCATTAGTCTATTATTCAGAGTGTGTATACCATTAAGCTGAtatcttctgtttttttgttttcaacaCCTGTGCATGCATGGAAACAATTAGATTAAGGAAATAAAGTGTGTACCTGTTGACTAAAAAGTTCAGTCTGAGGACACACAGCATTATGTGACACTTGCAACTTTATGAACTCCCAAATAAATGCTTGTTACTGGAATTAATAGATTCACTACTTACAGCTGCGctactaaaataaatactgttagTGGCTCTTGCAGACCCAGTGCTATTTTTCAGATTATCGATTTACTTAACATGCAAATCATTctttttttgattttattttttatttatttatttttttaaatcagattattTTGTACACGTAAACACACTCATTGAAATGGTATGTCCTGTGTCTTACCCTCAGCAAAATATACGGCACCATTCTACAAATATCCAGGCTATCCTCTTATGGTTTATTTTTCACAATTAATtaacatctgtatgtgtgtatatatgtgtggatgtgtgtgtgtatcatacTGCTATACACATGGCTGTGTGTATTCTTTAGAAGTGCCTTTGATAGAGCTTCCTATAGATCATTAGACACTATGTGACTGTATATACTTACACATGaaggccaaacacacacatgcaaaagtTTACGCCTCAGTTTGATTTTAAATTTACCCAGGCCATGGATAGGTTATTGCAAGGCAAGAACATGTGTTGGTGTTAATGTAGTCACTCAGTTGAGACAATCCTTCTTGGTGCTTGTGGCAGTTTTTTGCACCACCAATCTGAATTACTTCATATGTTAATGACAGTTAAAAAATTTCTTCTAATTCCAGCTTCTGGCTCAGCAAACAGTGAAAGAAGCACGAGTGCCATAACTATAATCATCTTTTGCACTTGCTCTTATGAatctttttccctctttttgcCATGttgatattgtttttattactgaatgtaTTGAAGCGGCTAGCTGTGTAACATGTTTCTCGCCAGTGGTGATTGCAATAGAAATTTGTGgtttggaatgaaaaaaaaaaaaaaactgattttcttAGGATGTGTTTCACTGTATATATGCTGAAAGATCTAGAAAAACCACAATGAATAAATCATTTGCACTTTTA

Function

symbol description
lrp10 Orthologous to human LRP10 (LDL receptor related protein 10).

NR:

description
PREDICTED: low-density lipoprotein receptor-related protein 10

GO: NA

KEGG:

id description
K20050 LRP3_10_12; low-density lipoprotein receptor-related protein 3/10/12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936748.2 True 4120 mRNA 0.47 10 11146952 11157112

Neighbor

gene id symbol gene type direction distance location
LOC113539898 LOC108267947 coding downstream 78 11137415 ~ 11146874 (-)
LOC113540343 NA coding downstream 123311 11022870 ~ 11023641 (-)
haus3 haus3 coding downstream 392384 10747772 ~ 10754568 (-)
nelfa nelfa,LOC107562310,LOC107741467,LOC107753914,LOC107691925,LOC107588166 coding downstream 488811 10646651 ~ 10658141 (-)
tesk1 tesk1 coding downstream 515932 10601837 ~ 10631020 (-)
acin1b acin1,LOC108267949 coding upstream 35420 11192532 ~ 11217230 (-)
LOC113540753 NA coding upstream 51621 11208733 ~ 11208833 (-)
LOC113540751 NA coding upstream 55722 11212834 ~ 11212934 (-)
LOC113540752 NA coding upstream 57210 11214322 ~ 11214422 (-)
efs LOC108267924 coding upstream 60674 11217786 ~ 11231197 (-)
LOC117596980 NA non-coding downstream 63940 11080531 ~ 11083012 (-)
G62504 LOC108267929,LOC108261535 non-coding downstream 72249 11042345 ~ 11074703 (-)
G62469 LOC108267929 non-coding downstream 193208 10926840 ~ 10953744 (-)
G62183 NA non-coding downstream 574592 10572155 ~ 10572360 (-)
G62167 NA non-coding downstream 612530 10534073 ~ 10534422 (-)
G62743 NA non-coding upstream 155302 11312414 ~ 11345959 (-)
G62754 NA non-coding upstream 164258 11321370 ~ 11361429 (-)
LOC117596984 NA non-coding upstream 193585 11350697 ~ 11358554 (-)
G62735 LOC108261673,LOC108267931,LOC108267938,LOC108267738,LOC108267739,LOC108267740,LOC108267935,LOC108267932 non-coding upstream 208143 11365255 ~ 11366181 (-)
G62734 LOC108267738,LOC108267739,LOC108267931,LOC108267241,LOC108267938,LOC108261673,LOC108267740,LOC108267935 non-coding upstream 284005 11441117 ~ 11471047 (-)
nedd8 nedd8,LOC107588156,LOC108440049,LOC107562413,LOC103040682,LOC103358415,LOC106608856 other downstream 236741 10907025 ~ 10910211 (-)
svep1 svep1 other downstream 283454 10775252 ~ 10863498 (-)
poln poln,LOC107563414 other downstream 399306 10693257 ~ 10747646 (-)
gba2 gba2,LOC107749818,LOC107741462 other downstream 584946 10538245 ~ 10562006 (-)
trnan-guu_12 NA other downstream 651714 10495165 ~ 10495238 (-)
mrpl52 mrpl52 other upstream 20573 11177685 ~ 11182369 (-)
LOC113540328 LOC108267738,LOC108267931,LOC108267739,LOC108267932,LOC108267933,LOC108267740,LOC108261673,LOC108267241,LOC108267937,LOC108267929 other upstream 109272 11266384 ~ 11360044 (-)
LOC113538166 LOC108267929,LOC108261535,LOC108267954,LOC103358416,LOC107753927 other upstream 129337 11286449 ~ 11313616 (-)
si:dkey-183c6.7 LOC108267942 other upstream 244915 11402027 ~ 11415897 (-)
LOC117597110 LOC108267738,LOC108267739,LOC108267931,LOC108267932,LOC108267938,LOC108261673,LOC108267241,LOC108267937,LOC108267740,LOC108267935 other upstream 367714 11524826 ~ 11535243 (-)

Expression


Co-expression Network