f13a1b (LOC108267979,LOC108411459)


Basic Information

Item Value
gene id f13a1b
gene name LOC108267979,LOC108411459
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 10346280 ~ 10359403 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936749.2
gcacacacacggtGGGCTACTCCTTCTCTGATATAAAtggaagaaggaaagagaagttGTCCTGCCAGCCTCAGGAgcctgaagtgtgtgtaagtgtgtgcagACTCATCCAGCATCTATACCAACAAACAGATCAGTACAACAGACATGAGCGACCAGGAGACTCCTGAGAATACGGCCACGCCAACAACACCCGATGTGCCCCCTGTACGCCCCAAACAGGCATCTCACCGTGGACGCAGTGTGGGCCCAATCGCCAACTCCAACAAAGAATATGAAGAGGTCCCAGAGTTTGAGCCTTTCATGCTCCTGCCTAGAGGTCCTCCACCTCTTACTGAGTATCTGGATATCTGGGATGTCAATATGCTTAAACAGCCCAATGAGGAGAACAAGCAGaggcatcacacacacctgtactcCAATGACCACCTGATTGTACGCCGAGCACAGGagttcctcatcaaaatcaccTTCAACCGTCCTTTCAAGCCTAAACAGGACAAGTTTGCTGTTGAGTTTGCTATCGGTGCTGGCGCACAGTACAGTAAAGGCACCTACATCCCTGTCTTCCCGACTGCGGAGCGGCAGAGTTTGTGGCGTGGCCAGATCATAGAGAGCTCAGACAATGTTGTCACCATGGGCATCACCCCTGCTCCGGACTGCATTGTGGGAAAATACAGGATGTATGTCGCTGTGGTCACTCCATATGGCATTCGGAGGACTAGGAGGGACCCAAGTTTGGACACATATATAATCTTCAACCCCTGGTCACCAGGTGATACTGTGTTCCTtgatgatgaagaggagagagaggagtgtgtgctGAATGAATTGGGCATCATCTATCATGGCGCATACGATGACGTGTCTGAACGTCCTTGGAACTATGGACAGTTTGAGTTTGGCGTTCTGGATGCATGTCTGTTCATCTTAGATAAAGCTGAAATGCCCCTCACTAACCGTGGAGATCCTATCAAAGTCAGCAGGAAGGGCTCTGCTATGATGAACTCgcgtgatgatgatggtgtgctGGTGGGAAACTGGAGTGGTGATTACCTGTATGGTGTGGCTCCCACCTCCTGGACAGGCAGTGTGGAGATCCTGCTGGACTATGCTGGAAGTAGAGGACAGTCAGTCAGTTTTGCCCAGTGCTGGGTCTATGCTGCTGTGTTTAATACTTttttacgCTGTCTGGGTATTCCTAGCAGAGTGGTCACTAACTTCTTCTCTGCCCATGACAACAATGGAAACCTGAAGATGGACATCATACTAGATGAAAATGGCAGAGTGGACAGAACTCACACCAGGGACTCCATCTGGAATTATCATTGCTGGAATGAGTGCTACATGGCCAGACCTGATCTCCCTGATGGCTTTGGAGGCTGGCAGGTTGTGGATGCTACACCTCAGGAGACCAGTGatgGTATGTACCGGTGTGGACCGGCATCTGTGGCAGCCATTAAACATGGCCAGGTCTGCTATCCTTTTGATGCTCCATTTGTGTTTGCAGAGGTGAACAGTGACTTGGTGTACTACTCCAGAAGTAAAGATGGCACACTGGAACCTGTGAAGGTGAACACCAGCTATGTGGGCCGCATGGTGCTGACCAAAGCAGTGCTGGATAAAGGACGGAGAGACATCATCGACCATTACAAGTTCCCTGAGGgcACTGCAGAGGAACGTCGAGTTCTGGAGAAAGCAGAAGAGTTTGGCTGTCAGCGCGAGAAGGCTTCTGTGCCTCAGGCAGATGTGGAGGTAGAGATCCTTGCTTTGGAGGTGCAGCGGGGTGATGATTTTGACCTGGAGCTGCAGTTCACCAACCACAGCAGCCAGCAACGTGTGGTGGACATCTACATCAGTGGTAACGTGGTCTACTACACAGGAGTGCCGAGTGCTGAGGTCATCTTCAAGACCCCTGTTGTGAAACTGGAGCCACAGCAGAgtaaaaaggaaaaagttgTGGTGCGCAGTAAGGACTATCAGAGTAAGCTGGTGGAACAGGGAAACCTGAACTTCATCGCTACAGGGAAAGTGCAAGAGACGGGTCGAATCATAACTGCCATGAGGGTTGTCACGGTGCACAATCCCAAACTCACTGTGCAGGTGACTGGTTCTCCTAGAGTGGCTGAAGAGATGTACGTGACAGTGGAGTTCACCAACCCCTTCAAATTCAGTTTGGAaaatgtgtatgtgcgtgtggaGGGGCCTGGCATCATGTCAATCAATACTAAACAGTACAGcATAATTGGCCCAGGCAGCTCTATAACATGGACTGAGCGATTCAGTCCTCGAAGGCCAGGAACCACCAAACTGATGGCCAGCCTGGACTGTGCTGCTCTCAGGCAGGTGTATGGGGAGGTGGAGGTCACCATCCAGCCATAAACtcttgagaaagagagagagaaaaacagaaaggatAAAGTCGACCTAGACTAATATTACAGAAATACCATAGGTCAGTCTCTATAACATTAATGTTGactgaaaagaaaatcaattatATACTTTTAAACCAGGAAAAGCTACAGTGTCTTGGACAGGCACCAACAAGTTACATTATTTgccattttgccttttttttgtttttaaataaatgtaagcaTAATAGAGAGCTGATTGATAAATAAAGAGCATTTGAAAAGCT
>XM_026936750.2
tcacacacacacacacacacacacacacgcacacgcacacacacggtGGGCTACTCCTTCTCTGATATAAAtggaagaaggaaagagaagttGTCCTGCCAGCCTCAGGAgcctgaagtgtgtgtaagtgtgtgcagACTCATCCAGCATCTATACCAACAAACAGATCAGGTTTATGAGTGAGTGTTGGTAGTATTTTTTATACCAGTACAACAGACATGAGCGACCAGGAGACTCCTGAGAATACGGCCACGCCAACAACACCCGATGTGCCCCCTGTACGCCCCAAACAGGCATCTCACCGTGGACGCAGTGTGGGCCCAATCGCCAACTCCAACAAAGAATATGAAGAGGTCCCAGAGTTTGAGCCTTTCATGCTCCTGCCTAGAGGTCCTCCACCTCTTACTGAGTATCTGGATATCTGGGATGTCAATATGCTTAAACAGCCCAATGAGGAGAACAAGCAGaggcatcacacacacctgtactcCAATGACCACCTGATTGTACGCCGAGCACAGGagttcctcatcaaaatcaccTTCAACCGTCCTTTCAAGCCTAAACAGGACAAGTTTGCTGTTGAGTTTGCTATCGGTGCTGGCGCACAGTACAGTAAAGGCACCTACATCCCTGTCTTCCCGACTGCGGAGCGGCAGAGTTTGTGGCGTGGCCAGATCATAGAGAGCTCAGACAATGTTGTCACCATGGGCATCACCCCTGCTCCGGACTGCATTGTGGGAAAATACAGGATGTATGTCGCTGTGGTCACTCCATATGGCATTCGGAGGACTAGGAGGGACCCAAGTTTGGACACATATATAATCTTCAACCCCTGGTCACCAGGTGATACTGTGTTCCTtgatgatgaagaggagagagaggagtgtgtgctGAATGAATTGGGCATCATCTATCATGGCGCATACGATGACGTGTCTGAACGTCCTTGGAACTATGGACAGTTTGAGTTTGGCGTTCTGGATGCATGTCTGTTCATCTTAGATAAAGCTGAAATGCCCCTCACTAACCGTGGAGATCCTATCAAAGTCAGCAGGAAGGGCTCTGCTATGATGAACTCgcgtgatgatgatggtgtgctGGTGGGAAACTGGAGTGGTGATTACCTGTATGGTGTGGCTCCCACCTCCTGGACAGGCAGTGTGGAGATCCTGCTGGACTATGCTGGAAGTAGAGGACAGTCAGTCAGTTTTGCCCAGTGCTGGGTCTATGCTGCTGTGTTTAATACTTttttacgCTGTCTGGGTATTCCTAGCAGAGTGGTCACTAACTTCTTCTCTGCCCATGACAACAATGGAAACCTGAAGATGGACATCATACTAGATGAAAATGGCAGAGTGGACAGAACTCACACCAGGGACTCCATCTGGAATTATCATTGCTGGAATGAGTGCTACATGGCCAGACCTGATCTCCCTGATGGCTTTGGAGGCTGGCAGGTTGTGGATGCTACACCTCAGGAGACCAGTGatgGTATGTACCGGTGTGGACCGGCATCTGTGGCAGCCATTAAACATGGCCAGGTCTGCTATCCTTTTGATGCTCCATTTGTGTTTGCAGAGGTGAACAGTGACTTGGTGTACTACTCCAGAAGTAAAGATGGCACACTGGAACCTGTGAAGGTGAACACCAGCTATGTGGGCCGCATGGTGCTGACCAAAGCAGTGCTGGATAAAGGACGGAGAGACATCATCGACCATTACAAGTTCCCTGAGGgcACTGCAGAGGAACGTCGAGTTCTGGAGAAAGCAGAAGAGTTTGGCTGTCAGCGCGAGAAGGCTTCTGTGCCTCAGGCAGATGTGGAGGTAGAGATCCTTGCTTTGGAGGTGCAGCGGGGTGATGATTTTGACCTGGAGCTGCAGTTCACCAACCACAGCAGCCAGCAACGTGTGGTGGACATCTACATCAGTGGTAACGTGGTCTACTACACAGGAGTGCCGAGTGCTGAGGTCATCTTCAAGACCCCTGTTGTGAAACTGGAGCCACAGCAGAgtaaaaaggaaaaagttgTGGTGCGCAGTAAGGACTATCAGAGTAAGCTGGTGGAACAGGGAAACCTGAACTTCATCGCTACAGGGAAAGTGCAAGAGACGGGTCGAATCATAACTGCCATGAGGGTTGTCACGGTGCACAATCCCAAACTCACTGTGCAGGTGACTGGTTCTCCTAGAGTGGCTGAAGAGATGTACGTGACAGTGGAGTTCACCAACCCCTTCAAATTCAGTTTGGAaaatgtgtatgtgcgtgtggaGGGGCCTGGCATCATGTCAATCAATACTAAACAGTACAGcATAATTGGCCCAGGCAGCTCTATAACATGGACTGAGCGATTCAGTCCTCGAAGGCCAGGAACCACCAAACTGATGGCCAGCCTGGACTGTGCTGCTCTCAGGCAGGTGTATGGGGAGGTGGAGGTCACCATCCAGCCATAAACtcttgagaaagagagagagaaaaacagaaaggatAAAGTCGACCTAGACTAATATTACAGAAATACCATAGGTCAGTCTCTATAACATTAATGTTGactgaaaagaaaatcaattatATACTTTTAAACCAGGAAAAGCTACAGTGTCTTGGACAGGCACCAACAAGTTACATTATTTgccattttgccttttttttgtttttaaataaatgtaagcaTAATAGAGAGCTGATTGATAAATAAAGAGCATTTGAAAAGCT
>XM_026936751.2
cgcacacacacggtGGGCTACTCCTTCTCTGATATAAAtggaagaaggaaagagaagttGTCCTGCCAGCCTCAGGAgcctgaagtgtgtgtaagtgtgtgcagACTCATCCAGCATCTATACCAACAAACAGATCAGTATTTTTTATACCAGTACAACAGACATGAGCGACCAGGAGACTCCTGAGAATACGGCCACGCCAACAACACCCGATGTGCCCCCTGTACGCCCCAAACAGGCATCTCACCGTGGACGCAGTGTGGGCCCAATCGCCAACTCCAACAAAGAATATGAAGAGGTCCCAGAGTTTGAGCCTTTCATGCTCCTGCCTAGAGGTCCTCCACCTCTTACTGAGTATCTGGATATCTGGGATGTCAATATGCTTAAACAGCCCAATGAGGAGAACAAGCAGaggcatcacacacacctgtactcCAATGACCACCTGATTGTACGCCGAGCACAGGagttcctcatcaaaatcaccTTCAACCGTCCTTTCAAGCCTAAACAGGACAAGTTTGCTGTTGAGTTTGCTATCGGTGCTGGCGCACAGTACAGTAAAGGCACCTACATCCCTGTCTTCCCGACTGCGGAGCGGCAGAGTTTGTGGCGTGGCCAGATCATAGAGAGCTCAGACAATGTTGTCACCATGGGCATCACCCCTGCTCCGGACTGCATTGTGGGAAAATACAGGATGTATGTCGCTGTGGTCACTCCATATGGCATTCGGAGGACTAGGAGGGACCCAAGTTTGGACACATATATAATCTTCAACCCCTGGTCACCAGGTGATACTGTGTTCCTtgatgatgaagaggagagagaggagtgtgtgctGAATGAATTGGGCATCATCTATCATGGCGCATACGATGACGTGTCTGAACGTCCTTGGAACTATGGACAGTTTGAGTTTGGCGTTCTGGATGCATGTCTGTTCATCTTAGATAAAGCTGAAATGCCCCTCACTAACCGTGGAGATCCTATCAAAGTCAGCAGGAAGGGCTCTGCTATGATGAACTCgcgtgatgatgatggtgtgctGGTGGGAAACTGGAGTGGTGATTACCTGTATGGTGTGGCTCCCACCTCCTGGACAGGCAGTGTGGAGATCCTGCTGGACTATGCTGGAAGTAGAGGACAGTCAGTCAGTTTTGCCCAGTGCTGGGTCTATGCTGCTGTGTTTAATACTTttttacgCTGTCTGGGTATTCCTAGCAGAGTGGTCACTAACTTCTTCTCTGCCCATGACAACAATGGAAACCTGAAGATGGACATCATACTAGATGAAAATGGCAGAGTGGACAGAACTCACACCAGGGACTCCATCTGGAATTATCATTGCTGGAATGAGTGCTACATGGCCAGACCTGATCTCCCTGATGGCTTTGGAGGCTGGCAGGTTGTGGATGCTACACCTCAGGAGACCAGTGatgGTATGTACCGGTGTGGACCGGCATCTGTGGCAGCCATTAAACATGGCCAGGTCTGCTATCCTTTTGATGCTCCATTTGTGTTTGCAGAGGTGAACAGTGACTTGGTGTACTACTCCAGAAGTAAAGATGGCACACTGGAACCTGTGAAGGTGAACACCAGCTATGTGGGCCGCATGGTGCTGACCAAAGCAGTGCTGGATAAAGGACGGAGAGACATCATCGACCATTACAAGTTCCCTGAGGgcACTGCAGAGGAACGTCGAGTTCTGGAGAAAGCAGAAGAGTTTGGCTGTCAGCGCGAGAAGGCTTCTGTGCCTCAGGCAGATGTGGAGGTAGAGATCCTTGCTTTGGAGGTGCAGCGGGGTGATGATTTTGACCTGGAGCTGCAGTTCACCAACCACAGCAGCCAGCAACGTGTGGTGGACATCTACATCAGTGGTAACGTGGTCTACTACACAGGAGTGCCGAGTGCTGAGGTCATCTTCAAGACCCCTGTTGTGAAACTGGAGCCACAGCAGAgtaaaaaggaaaaagttgTGGTGCGCAGTAAGGACTATCAGAGTAAGCTGGTGGAACAGGGAAACCTGAACTTCATCGCTACAGGGAAAGTGCAAGAGACGGGTCGAATCATAACTGCCATGAGGGTTGTCACGGTGCACAATCCCAAACTCACTGTGCAGGTGACTGGTTCTCCTAGAGTGGCTGAAGAGATGTACGTGACAGTGGAGTTCACCAACCCCTTCAAATTCAGTTTGGAaaatgtgtatgtgcgtgtggaGGGGCCTGGCATCATGTCAATCAATACTAAACAGTACAGcATAATTGGCCCAGGCAGCTCTATAACATGGACTGAGCGATTCAGTCCTCGAAGGCCAGGAACCACCAAACTGATGGCCAGCCTGGACTGTGCTGCTCTCAGGCAGGTGTATGGGGAGGTGGAGGTCACCATCCAGCCATAAACtcttgagaaagagagagagaaaaacagaaaggatAAAGTCGACCTAGACTAATATTACAGAAATACCATAGGTCAGTCTCTATAACATTAATGTTGactgaaaagaaaatcaattatATACTTTTAAACCAGGAAAAGCTACAGTGTCTTGGACAGGCACCAACAAGTTACATTATTTgccattttgccttttttttgtttttaaataaatgtaagcaTAATAGAGAGCTGATTGATAAATAAAGAGCATTTGAAAAGCT

Function

NR:

description
coagulation factor XIII A chain-like

GO:

id name namespace
GO:0018149 peptide cross-linking biological_process
GO:0046872 metal ion binding molecular_function
GO:0003810 protein-glutamine gamma-glutamyltransferase activity molecular_function

KEGG:

id description
K03917 F13A1; coagulation factor XIII A1 polypeptide

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936749.2 False 2644 mRNA 0.49 15 10346280 10359369
XM_026936750.2 True 2715 mRNA 0.49 15 10346280 10359403
XM_026936751.2 False 2660 mRNA 0.49 15 10346280 10359370

Neighbor

gene id symbol gene type direction distance location
LOC113540334 LOC108267980 coding downstream 2149 10333469 ~ 10344131 (-)
LOC117596978 LOC108267983,LOC108267929 coding downstream 26080 10308651 ~ 10320200 (-)
LOC113547269 NA coding downstream 109668 10231674 ~ 10236612 (-)
LOC113538503 LOC108261535 coding downstream 156352 10167917 ~ 10189928 (-)
LOC117597105 LOC108267929 coding downstream 202851 10111162 ~ 10143429 (-)
tex261 tex261,LOC107755640 coding upstream 39150 10398553 ~ 10404916 (-)
shtn2 LOC108267975 coding upstream 46709 10406112 ~ 10416565 (-)
vax2 vax2,LOC107697471 coding upstream 70886 10430289 ~ 10448477 (-)
c4h20orf27 c7h20orf27,cunh20orf27,si:ch211-74f19.2,LOC107755635 coding upstream 100816 10460219 ~ 10474141 (-)
trnan-guu NA coding upstream 114993 10474396 ~ 10474470 (-)
LOC113540369 LOC108267738,LOC108267937,LOC108267740,LOC108267931,LOC108267932,LOC108267929 non-coding downstream 135048 10202231 ~ 10211232 (-)
LOC113540700 NA non-coding downstream 304501 10041567 ~ 10041779 (-)
LOC117597227 NA non-coding downstream 305586 10040482 ~ 10040694 (-)
LOC113540709 NA non-coding downstream 306693 10039380 ~ 10039587 (-)
LOC113540720 NA non-coding downstream 307514 10038554 ~ 10038766 (-)
G62108 LOC108267978,LOC108411458 non-coding upstream 4609 10364012 ~ 10364892 (-)
G62109 LOC108267978 non-coding upstream 8918 10368321 ~ 10370563 (-)
G62125 NA non-coding upstream 115367 10474770 ~ 10483928 (-)
LOC117596989 NA non-coding upstream 138118 10497521 ~ 10499087 (-)
G62167 NA non-coding upstream 174670 10534073 ~ 10534422 (-)
LOC113540372 NA other downstream 266043 10078688 ~ 10080237 (-)
cxcl19 LOC108267987 other downstream 273051 10070406 ~ 10073229 (-)
G61900 NA other downstream 304514 9605727 ~ 10041766 (-)
G61972 actn3,LOC106577856,LOC106608893 other downstream 540962 9776278 ~ 9805318 (-)
G61537 NA other downstream 1007535 9337826 ~ 9338745 (-)
trnan-guu_9 NA other upstream 127265 10486668 ~ 10486741 (-)
trnan-guu_10 NA other upstream 130945 10490348 ~ 10490421 (-)
trnan-guu_11 NA other upstream 132187 10491590 ~ 10491663 (-)
trnan-guu_12 NA other upstream 135762 10495165 ~ 10495238 (-)
gba2 gba2,LOC107749818,LOC107741462 other upstream 178842 10538245 ~ 10562006 (-)

Expression


Co-expression Network