ajuba (ajuba)


Basic Information

Item Value
gene id ajuba
gene name ajuba
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 11183735 ~ 11191994 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936755.2
CgctacagaagaagaagaaagaagggggAGGTAGAGAAAAATtgcagcaaagaaagaaagttaaTCGGCgttgtttcattttcagcttttaaGAAGACGTTTTCCGCGCTCGTTTCCCTCTCTGAAGGTTTGGATAAGTGCTCCGACGCTTTTGCGACTTcttcacacatttctttttgtcCCTCATGTTTGAGGCTTTTCCACTATTTTTTTGGAGTTCATTTTCTTTCCAGCAGGATTGGAAATAGTGGGAAAGCTCAGAGGAAGCGTGTCCGTGTGCTCAGGTAGACATTATTAGTTGGTGTACAGCGTGTTTCTGTCTTACTGGTGAAGCCGAAGCCTTTTCTCTTAGAAAGCTGAGGAGAAAACGACATTTTTCTGCCTTCCCCGTGTTTGGAGCCAGTTAGCTGTGGCACAGCGGCTGCAGTGTCGCAGAACCACAGCTTATCTGACCACTGAAGTAGCTTGAAGTTGACTTAAAGGTGTCATATACCTGCTATCAGCAACACGTCTTTGAAACTACGGACTAAGTGGCAGTTATTAGGAGACTTTTCAGCtgcaaccagaaaaaaaaaacaaaaacacaaacagcagcCTTTTCTGAATGTGACCGCTACATTCACCACACTTCAGCCGACAACTACAACGaaataactttcttttttttatgaagacTAGCGTGCGTTAAAAGCTCGGACATCAGGTGCTGAGGTAAAGCGTCTTGTTTTGTTACTTGGCAGCTGGCGACGGGAGCGCGAGCAGGGTGGGAAGGCATCATTCAGCCGCTAGCAGATGGATGTGCATGCTTCCCTCCTCACATGCACCAGCAGATCCGCGACGTGGAAACTTTCAGGCCACATCAAACATCTCTTCAAGTCTCATTAATCCGAGATGTAGCCCACATGCCAtaacgtattttttttttaacttatctttattttatctgAGATATTTATTGTTAGCTgaacaaacaatacaaaacagcttttgaactgttttttttttttttgtcttaatccTTGTTTGTTGTCTTTGTCATTTCATTTGCTGTAGATTTAGAAAGACTTGaacattgttttgtgtttacacTGTATTTATGATACTGTATTTAAGCTGTAGTCTTTCAGGtgtcatttcagaaaaaaaagaaaagtgtttaaCACTTGTTCAGGCTATTTATTAGAAATTTGACATCATGGAGAAAATTGGTACCAAATTGAAGCAAAAGTTTAAACTGGCCGATTCTGGCAGTGTCAAGtttagcaaaaagaaaaatgaactcTCCAACACAAATAACAACAGTAACAGTGTAAGTGGTGCACCGCCAGTTGTGACCCACTTGAGCCCGGCAACAAGCCCGTCACCTGCGAGTACGGTTCAGTTCAGCCTCACCTGCTCACCCTCCATTGAGGCATCTTCAGGCGTCAGATCGGCAAAGGTGGTCAACTCTCAGAGGGTGTCTACCTGTGTTGCCTCCACCACCTCACCATCTGTACCAGAAGAATCTGGGCCTTCGCTTGAACACCACCCAGTGACTCTTGCTCCTTTGCGGCGCCGCTCGCCTCAGCAGCGCGTGTCTTGCTACCTGCCTGACACTGTGGAAGGCCGAGGTGCCTGTGATCAGTCCAGGCGTACCGATTTGCCCCAAGGTGAGCATGCCGACCCACAAGGTACTTACAGCCCAAATTCGCGAGTCGCCCTGAACCAGCGCCGGTATTCTCTGGAGCTTCAGCAGCTTGTGAGAAGGCAGCAGCTCCTTGCCCAACCCCCACTGTCTTCCATGCCGCCTCCATACCCAACACCTAGCCCAGTCACCCGCTCAGGTTCTGCAGAACCAAGCTTTCTGCCTGAACCAGAACGCCACAAACGCCTCTCCCTGCAGGAGGCACTGTTCTACAAGCGCTGGAGCTCTGGAGGAGAGCCATGGGACAGCGGCAGGCCAGCATCACTTTCACATCCTCCAGTGAGGAGCCATGAAGGTGCTGGGGCTACCTGCCTCTTTCCTTCTGGACCAGCACTGAGCCCCTGCTCCTCCTTTAGCCTGCAGGAGTCAGTGTTAGCCAGCCCACGCTCAAGCTTTGCCAGCAGCACAGCTagtggaggaggtggtggtggttggtggtggtggaggaggggCACAAGCGGAAGTCCTATCGGTAGCCCGTGCAGCAGCAACCGCACCAGCGGCATTAGCCTTGGCTACGACAGTCGCCACGTGTCTGGCCCTGCCCAGCCGCTGCACTTCTCCTCCACACAGCTAGGTGGCACCACCACTGGGCATGTGTACCCAACATCTGGCCCTGGGAAAGCACCCCCAATAGAGGTGTGGAGGGACTATCTAGAACGAACATCAGGGATCGGAGGAGGTTTTCAAGATGGCCGCCACTCATACCCACCAGCGGGCAGTTCCCCAGCAGCAACAGAGTGGTGGAGTGGCACAGAGCAACGGGGACCAAGGACAGAGAGCACAGGGGAGCGGATGAGGCACTCAGACCTGCCAGGTACCCACTACCAGCAGGAGCTGACCCGCCTCCTACTGAGGGACATGACATTGGAGGGAGAAGAGCAGTTGGGAGGACTAGCCTTGAGGGAGCAGCCTCTGTCCACCTCTGCACCTCCTGCAGCCAATGTATCTGTGGCTCTGAAACCTCAGGAGGAACAGGTGTCTCTGAGGGAACCACCATCAGCCCTGGACCGGCAAGAATTTTTTGGAACATGTGTGAAGTGTGGAAAAGGTGTGTATGGTGCAGATAATGCTTGCCAGGCTCTGGACAGTCTGTATCACACTCGCTGCTTCACCTGTGTGTCCTGCGGTCGCACACTTAGAAACAAGGATTTCTACAATGTTGGTGGATCAGTGTACTGTAAGGAGGATTACATGTTTTCTGGCTTCCAGGCAGCAGCAgaaaaatgctgtgtgtgtggccatCTGATCCTGGAGCAGattctGCAAGCCCTGGGGAACTCGTATCACCCGGGCTGTTTCCGCTGTACGGTCTGCTCCAAGACGCTGGATGGCGTGCCTTTCACAGTGGACTACCTCAATAACGTCTACTGCGTTGCAGACTACAACAGGACATTCGCTCCTAAATGCGCTGCCTGTTTACAACCTATTTTACCTGCTGAGGGCAGTGAGGAGATTCTCAGGGTGGTATCCATGAACAAAGACTATCACTTTGAGTGCTATCACTGTGAGGAGTGTGGGAAGCAGCTCTCTGATAAACCAGGCTCTCAGTGCTTCCCCCTGGACTCCCACCTCCTCTGCCACTCCTGTCACATGAGCAGGGTGTGCGCCTCTCACAACCTTCccccacacaacacacactaaatgTGGGGACCATTCTGTTGGACCAATACACTGCTTTGTAATATGTATGCATATTTGTGACCAAGATTATTTGTCACTGTCTTTTAAAGTATTTGctcttttcttgttcttttccatcacctgcacacacatgcTTCAGATTGCAACACTGAAAAGAGGTAGTGTGATGTTATTGACTGATTTTTCAAACTTGAGGTCCTACATTTCAAGTGTGGAACTAGAGGGATGTGTGCCCCTCTAGTGGCCAGTAAGTTCACAGACAGAATCCTGCTGACTAAACTTTCGGTACAAGGTTTGATCACTGTTGTCAACCTTACTAAGTTATTAGGGCATATGAAATATCATGTTGAGCTACTGTTTATATTCTCATATCTgctgtagaaaaaaatacaagggACTTATtcttaactttttaaaaaaaatatttaatatcactAGCAAAGGTTTTGCACTTAAATGAACATGTTTACCttttaagagattttttttttaaaagaaatgtttctGCAAAAGAGTAAAAACATTCCTGTATCTGTCTTTATTAATAAACTTCTTTCTATCTCA

Function

symbol description
ajuba Predicted to enable transcription corepressor activity. Acts upstream of or within heart development. Predicted to be part of transcription regulator complex. Predicted to be active in P-body; adherens junction; and nucleus. Is expressed in head. Orthologous to human AJUBA (ajuba LIM protein).

NR:

description
LIM domain-containing protein ajuba-like isoform X1

GO: NA

KEGG:

id description
K16682 AJUBA, LIMD1, WTIP; LIM domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936755.2 True 3892 mRNA 0.48 9 11183735 11191994

Neighbor

gene id symbol gene type direction distance location
mmp14a mmp14,mmp14a,LOC107691938,LOC107753930 coding upstream 12395 11159921 ~ 11171340 (+)
LOC113540324 NA coding upstream 46309 11130175 ~ 11137426 (+)
LOC113539896 LOC108261535 coding upstream 72641 11090981 ~ 11111094 (+)
LOC113540335 LOC108267929,LOC108261535 coding upstream 120207 10989215 ~ 11063528 (+)
LOC117596976 LOC108267929 coding upstream 195169 10964062 ~ 10988566 (+)
dhrs4 dhrs4,dhrs1,LOC103023174,LOC107753983,LOC108440044,LOC107742330,LOC107563424 coding downstream 48680 11240674 ~ 11244577 (+)
cideb cideb,LOC108440045 coding downstream 63944 11255938 ~ 11258662 (+)
si:dkey-183c6.8 LOC108267925,LOC108434846 coding downstream 191440 11383434 ~ 11400606 (+)
LOC113539902 LOC108267738,LOC108267739,LOC108267932,LOC108267740,LOC108267931,LOC108261673,LOC108267937,LOC108267938 coding downstream 248094 11440088 ~ 11445185 (+)
LOC117596977 LOC108267738,LOC108267937,LOC108267739,LOC108267932,LOC108267931,LOC108261673 coding downstream 261936 11453930 ~ 11462747 (+)
LOC117596983 NA non-coding upstream 1 11182770 ~ 11183734 (+)
LOC113540371 NA non-coding upstream 160939 11020133 ~ 11022796 (+)
G62416 NA non-coding upstream 273593 10907025 ~ 10910142 (+)
G62373 NA non-coding upstream 318874 10864655 ~ 10864861 (+)
LOC117596985 NA non-coding upstream 367183 10815750 ~ 10816552 (+)
G62554 NA non-coding downstream 23161 11215155 ~ 11215743 (+)
G62572 LOC108261673,LOC108267931,LOC108267740,LOC108267738,LOC108267932,LOC108267935,LOC108267938 non-coding downstream 83445 11275439 ~ 11366783 (+)
G62585 LOC108267738,LOC108267739,LOC108267932,LOC108267937,LOC108267938,LOC108267241,LOC108267941 non-coding downstream 128103 11320097 ~ 11360515 (+)
LOC117596981 NA non-coding downstream 130476 11322470 ~ 11325752 (+)
LOC113540368 NA non-coding downstream 226013 11418007 ~ 11421178 (+)
c4h4orf48 c7h4orf48 other upstream 520324 10657357 ~ 10663411 (+)
trnak-cuu_19 NA other upstream 688265 10495398 ~ 10495470 (+)
trnak-cuu_18 NA other upstream 691866 10491797 ~ 10491869 (+)
trnak-cuu_17 NA other upstream 693085 10490578 ~ 10490650 (+)
trnak-cuu_16 NA other upstream 694299 10489365 ~ 10489436 (+)
LOC117596972 LOC108267738,LOC108267932,LOC108267931,LOC108267739,LOC108267937,LOC108261673,LOC108267938,LOC108267933,LOC108267935,LOC108267740 other downstream 398721 11590715 ~ 11605230 (+)
si:ch211-200p22.4 LOC108267499,LOC108434851 other downstream 452907 11644901 ~ 11705336 (+)
si:dkey-112a7.4 LOC108268066 other downstream 1100497 12292491 ~ 12295133 (+)
tmem88b tmem88,bcl6b,LOC108267673 other downstream 2014663 13206657 ~ 13219859 (+)
slc16a13 slc16a13 other downstream 2083468 13275462 ~ 13285834 (+)

Expression


Co-expression Network