shtn2 (LOC108267975)


Basic Information

Item Value
gene id shtn2
gene name LOC108267975
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 10406112 ~ 10416565 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936764.2
GAATTCAATATCAGTTCTCATATTGTTCTGGATTGTTAAGAAGATGTGGAGTTCaggaacagatttaaaaaatttagACTCTGAGGATGAGAGTGTCCATTCttcagaggaggaagaagacaTCCAGTGTGAGATTTTGGAGAAGCAACGAGATGAAGCCAACCAGAGACTTTCTCAAATGGAGGAAGCATCCGCTCAGCTGCTGAAGGAGCTAAACTTGCTGGAGATTCAGTTTCAGATTGAACGCTCATGCAGAGAGAATGCTGAGGCCTTTGCCTTAAAGGTGACAAAAGAGAACAAGACCTTAAAGAGAAAAAGTCAGGCTCTCCTGCCCCTGATCCCAGAGTTGCCTGAAAACCTGGCTGCTCTGAACTTGGACCTAGAAGATGACTCTGCTTCTGACCTTAACACGTCAGTGGATTTGGCAGAAGAACCTCTTCTCAAAAGTCAGGCCCAGATCAGAGAGCTTCAGTCCTCTATCGACCAGCTCTTGGGGGAGAAGATGCAGCTATGTGAACAGGTAGAAGtcttgaaaaaagaaaaggaagaactGAAAGAACAGCTTGTAATGGAGGTTCAGGAGAAAGAGGCCATTTTGAAGAAATTAACTAAACAGAGTCGAAcagtgaacaaaataaaaagagTGTCCCAGCTTGTTACAGAAGAGTTTGCAGAGATGTCACAGAAGCTGGAAATGGAGCAAGGGCTTAGGCATCATGCTGAAGCATTTGCGCACCAGGTGCTGGTGAAGCAGAAGGAAAGCCAGAGGCAGAGCTTGGCCCTGGTAGAAAATGAAGACGTTGATGTACAGCTTCAACAAGCCCTTCAGCAGGTGGCTCAGCTCAGCAAAGCACTGGAGGAGATACGACTGCATCATCAAcaccagAGGAGTCAGTCTCAGGCAGTGATGGAGGAGTTTAATGTTCTTACTGAGCTGCAGATGGTCAGAGCTCAGCTAGAGACCAACATGAAAGAGAGGATGAAGATAGAGAATCAGTTGACAGACTCGCAAAACACTGTGACAGAACTGCAGGAGGAAGTTAAGCAGCTTCAGGATATATTGAAAACGGTCAAAGAGAATCCTCTTATTGAATCTGGCCTATCAAATGAAGAGAATGTCACTCCAGCTCCACTTTCTtcaactcctcctcctccacctcctccaccacctcctcctcctgtgcTCTCTACAAGTCCTATTGACCCACTGGATGCTTTGAGGAACAGAAAGAAAGTTGGAAACAATACCACTGACTTGAAGAAAACTGCACTTTCTGTAGATGTGAAAGCCAGGGCAGTGGATGAAATGATGGAGAGAATTAAGAAAGGGATTGTACTGAAGCCCACCCAGAAACCCCCACAGACTGGCTTGGATGATGAAGACTCATGGAAGGATCAAAGAAGTGAGAAGAGAAAGTCTGCTGTCCTTGAGTTGCAGGGAATACTGGAcaccataaaaaaaacaggacccAAAAGGATGCTGTCCAGGAAGAGGATTAGTTGTAATGTAGGGGAGGCGGAGCTTCAGATGGTCTTGCAGAGGAGAAGGCGGGCAATTGGGGATGAGAAAAGCTCCCCACCCACTACAGCTCCAAAAGCTCAGGATCCACCTCCTGCATCCACAGCCACAAGCTCCTCAAATTGGCTAGCAGAGAGTGGGAATGCTCCTGTCCTGCGGAGGCTGAAGCAGAACCAGGAAAAGAGAAACTCACGCGTCAGAGCATCAGAATGTGTCATCTGGGAAGACAAGTGAAGATAAAGGCAGTCAATGTTGTCTCTTGTCATCATATTGCTACTAATACGATAATCACATGAAAGTTGAAACCTAAATAAAGTTAACATAATACttgtcaaaatgaaaataaagttgcATGGGCTATGCTgaagattatttttctttaaagatataaaaagatCAAATACACTGATCCTtcagaaaataattttcattattcattattattaatcatttgaAAGATAGTGTTATGGTGTTGAACATAGTCCCTaattaccatttttttaaagtaaagttGAAAGTAAGTATTCAGTTTATATTTGTGGGCATTAACAATTTATCAGTTTTATCAATTAATTAGAAACCTTCAAAGGGCCAGAATGgttaatgaagaaataaaatataatattacaaattataaaaatatacttcttctacagtatatttatgaatatttcgttattttatttttttcttgctagATTTGTGTGCTTCTAAGAAACAAGTGAGTCTGTGAGGTGtcatcactctttctctctctgtattctCTATGTGTGTGGTTTTAAAAGCCTTCATTCGGGCATCAAGAAGATGGGgagaggtgtttttttttctctccacaccatcacactgctGTTCTTTGGTAAAAGCATTTAAGTGGAAAGGAATTATTTGCACTGTAGTAGCTCTTGGCTTTCTGCTTTTAAACTCTATTTATTCTATAAGAGTTCTTTGCACCCCCTTGAGAGAGCCCTTTATCTAGCAAACATTATAAAGAATTTATATCTCTCACCAGGAACTGTAAGGTGTCtgatttctctgtgtgtgtatgttgggggtggggttggtgTCTAAGGGGTGGATATGGATGTGTGATTTAGCTGAGGGTGGCAAGGTGGCACAG

Function

NR:

description
PREDICTED: shootin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936764.2 True 2639 mRNA 0.42 17 10406112 10416565

Neighbor

gene id symbol gene type direction distance location
tex261 tex261,LOC107755640 coding downstream 1196 10398553 ~ 10404916 (-)
f13a1b LOC108267979,LOC108411459 coding downstream 46709 10346280 ~ 10359403 (-)
LOC113540334 LOC108267980 coding downstream 61981 10333469 ~ 10344131 (-)
LOC117596978 LOC108267983,LOC108267929 coding downstream 85912 10308651 ~ 10320200 (-)
LOC113547269 NA coding downstream 169500 10231674 ~ 10236612 (-)
vax2 vax2,LOC107697471 coding upstream 13724 10430289 ~ 10448477 (-)
c4h20orf27 c7h20orf27,cunh20orf27,si:ch211-74f19.2,LOC107755635 coding upstream 43654 10460219 ~ 10474141 (-)
trnan-guu NA coding upstream 57831 10474396 ~ 10474470 (-)
trnan-guu_1 NA coding upstream 59058 10475623 ~ 10475696 (-)
trnan-guu_2 NA coding upstream 60293 10476858 ~ 10476930 (-)
G62109 LOC108267978 non-coding downstream 35549 10368321 ~ 10370563 (-)
G62108 LOC108267978,LOC108411458 non-coding downstream 41220 10364012 ~ 10364892 (-)
LOC113540369 LOC108267738,LOC108267937,LOC108267740,LOC108267931,LOC108267932,LOC108267929 non-coding downstream 194880 10202231 ~ 10211232 (-)
LOC113540700 NA non-coding downstream 364333 10041567 ~ 10041779 (-)
LOC117597227 NA non-coding downstream 365418 10040482 ~ 10040694 (-)
G62125 NA non-coding upstream 58205 10474770 ~ 10483928 (-)
LOC117596989 NA non-coding upstream 80956 10497521 ~ 10499087 (-)
G62167 NA non-coding upstream 117508 10534073 ~ 10534422 (-)
G62183 NA non-coding upstream 155590 10572155 ~ 10572360 (-)
G62469 LOC108267929 non-coding upstream 510275 10926840 ~ 10953744 (-)
LOC113540372 NA other downstream 325875 10078688 ~ 10080237 (-)
cxcl19 LOC108267987 other downstream 332883 10070406 ~ 10073229 (-)
G61900 NA other downstream 364346 9605727 ~ 10041766 (-)
G61972 actn3,LOC106577856,LOC106608893 other downstream 600794 9776278 ~ 9805318 (-)
G61537 NA other downstream 1067367 9337826 ~ 9338745 (-)
trnan-guu_9 NA other upstream 70103 10486668 ~ 10486741 (-)
trnan-guu_10 NA other upstream 73783 10490348 ~ 10490421 (-)
trnan-guu_11 NA other upstream 75025 10491590 ~ 10491663 (-)
trnan-guu_12 NA other upstream 78600 10495165 ~ 10495238 (-)
gba2 gba2,LOC107749818,LOC107741462 other upstream 121680 10538245 ~ 10562006 (-)

Expression


Co-expression Network