LOC113540335 (LOC108267929,LOC108261535)


Basic Information

Item Value
gene id LOC113540335
gene name LOC108267929,LOC108261535
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 10989215 ~ 11063528 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936774.2
ACACAGCATGAATATAgcatgaatattttaatttgtagtgTTTATACATAGAAATCACTACCATGCCAAAAAATAtcctaatttaattttaaatatctgCTCTGTACTCTGTTAGTGTCTGGCGTACAGCAGTCAGGTGTAACATGGGCTTAGTAAAAAGATGCTTAGGTGTGAAAAGGGCGTGGCTCACAAACAAACGAAAACGAAAGTAGGAAACACCTGAAAATGTGAGCTGTGCGAAGAGGGGCCTTTATTTTCCACCTATTCTtattgagaaaataaaaacttttaaaatgaGGATGATTTTGTGTCTGACTCTCCTGATTCTCTACAGCTTTATGGAATCTCAATCAGAGAAATTACAGGTGGTTGGTCCAGATTCTCCTCTTGTTGCTCTAGCTGGTGAAGATCTGGTTCTGCCCTGTTTTATCAAACCCAACACCAGCGCTGTAGACGTGACAGTGGAGTGGATGAGACTTGATGAAGTGGCTTCATTAGTGCATCTCTATAAGGATCATGAAGACAGAAATGTAAATCAGGCTCAGCCCTACAGAGGAAGAACATCACTGTTTAAAGAGGAGCTACAGAAAGGCAACGCTTCACTCAAACTCTCAGCTCTCCGAGTCTCTGATGAAGGAGAATATAAGTGTCTTGTTGAAGACAAATCCTGGTatgatgacatcactgttcACGTCACTGTTGAGGTTCTGGGAAGCCACTCAGTGATCACGATGGAGAGTTATGATAACTCAGGAGGGATTAATCTAGTGTGTGAGTCCAGAGGCTGGAAACCTGAACCTGAGGTTCTGTGGCTGGACAGAGAAGGAGCCACTCTGCCTGCTGAAGATACACAGACACATAGAGACACTGAGGGCTTCAGTGTGAAACGCCGCATCACTGTTTATGATTATAGCGACTCCAACAAGTTTTACTGCAGAATTCTacaaaaacatcacatgatGGAGACAGAGGTTATCATTAATAGTAAAGTCTTTGGTGTTTGGAATTGGCTTGTCGGCATTTCAGTTTCAGCATGTCTTACTGCTGTCGGTTTGATAGTAACTGCAGTTATCTGTTACAAGAAAGCCTCAGAACTTCAAAAGGAGAAGCAATGTGCAGagtttaaaaagaagaagaagtttgCAGtggATGTGACTCTGGATCCTGATACAGCTCATCCTGCACTCATCCTGTCTGCTGATGGAAAACAAGTGACACTTGGAGACACACAACAGAATCTCCCTGATACACCACTGAGGTTTCATTTTGCCAGTGTTGTGGGAAAGCAGAGTTTCTCCTCAGGGAGATTTTATTATGAGGTGCAGGTCCGAGGGAAAACTGAGTGGACATTAGGAGTCGTGAGAGAGGACATTAACAGGAAGAGGTGGATTCCACGGAGTCCTCAGAATGGATTCTGGACTGTGGGCCTGAGGAATGAGAATCAGTACTGGGCTTATGATGatgctgctgtctctctgacacTGATAGAGAAGGTGGAGAAGGTGGGGGTGTTTGTGGATTATGAGGAGGGTCTAGTCTCCTTTTATGATGTGGAGTCCAGCTCTCATATCTACTCTTTCACTGATCAGTCTTTCACTAAGAAGAAACTCTATCCATACTTCAGTCCTCGGCACAGTGAAAGAGGTGAAAATTCAGcaccactgatcatcactgctgttactgaataaatatctgttttatattctataacaattaaacttttttttttttcaattggctaaaataatcacttttaagttaattttatataaaataaacataataaactcTGTAAACAGTTTAAACATGTAGACTGTAAAATGAATTGTGGTTACATGAACACTAATAATACCAACATTATCTGATTTCAGCAGTTAAAATCAGATTAAAGCCATTATTAGATTTCTAGAAATTCTATAAAGACACTTTGTCATGGTTATGCCAAAATCGGTgctgaactacattacccatcagccctagcgtgtcacatgaccatgtccCACTGATCACccacacctgttttgtgttaatcCTATTAAGCACCCCTACATAAGTTCtggtttctgtttgtttcattgCCAAGCTTTTGTCattgttgtgtgtatatgttgttGTGTGCTCCACAGCCTTGATCATAGTCTGCCTGTTTTTGCCTTGTAGCCATTGTTAATGTTTATAGttctcattttcactgttttggttgtttgtgtTGCACCTTCTACAATAAAATCTACACTTGCATCCGCTGCATCTA
>XM_034303247.1
CCGCTGTGGTTTTATTGAGTAGGTttgccacactgaaatgaaaaggaGAATGTCATTATGTGATAAAGGGGTAAATGCTGAGTGGGACAGGATTATGTTACTGTGTGTGACTCTCCTGATTCTCTACAGCTTTATGGAATCTCAATCAGGGATGATTTTGTGTCTGACTCTCCTGATTCTCTACAGCTTTATGGAATCTCAATCAGAGCAAGTAAAATTGGTTGGCCCAGAAGCTCCTCTTGTTGCTGTAGCTGGTGAAGATCTGGTTCTGCCCTGTTTTATCAAACCCAGCACCAGCGCTGTGGACATGAGAGTGGAGTGGTTTAAACTAAACGTAGATGACTCATTAGTGCATCTCTATGAAGATCATGAAGACAGAAATGAAAATCAGGTTCAGTCCTACAGAGGAAGAACATCACTGTTTAAAGAGGAGCTACAGAAAGGCAACGCTTCACTCAAACTCTCAGCTCTCCGAGTCTCTGATGAAGGAGAATATAAGTGTTTTATTGAGGATGAATCCTGGTTTGATGACATCACTGTCCATGTCACTATTGAGGCTCAGGGAAGCCACCTGGTGATCATGATGGATACATATGATAACTCAGGAGGGATTAATCTAGTGTGTGAGTCCAGAGGCTGGAACCCTGAGCCTGAGGTTCTGTGGCTGGACAGAGAAGGAGCCACTCTGCCTGCTgaagatacacagatacacagagacactgagggCTTCAATGTGAAACGCCGCATCACTGTTTATGATTATAGCGACTCCAACAGGTTTTACTGCAGAtttcaacaacaacatcacATGAAGGAAGCAGAGGTCATCATTAATAGTAAAGTCTTTGATACTTGGAAGGTTGCTGTCGGCATTTCAGTTTCAACATGTCTTTTTACTGTTGGATGGATTGTAATTGCAGTTATTTGGTACAAGAAAgtgcTGCAGAGACGGATGATGAAACGCGTTTTAGCAGAGATCAAGGAGTTTGCAGAGCCACAGAAACAAAGGATGAAACACGTGTTAGCAGATAAGAAGAAGTCTGCAGTGGCTGTGACACTGGATCCTGATACAGCTCATCCTAAACTCAGAGTATCTGATGATGGAAAACAAGTGACATGTGGAGACACACAGCAGGATCTCCCTGATACACCACAGAGGTTTGATGAATGTATTAATGTTGTGGGAAAGCTGAGTTACTCCTCAAAGAAATTTTATTATGAGGTGCAGGTCAGTGGGAAAACTGCATGGATATTAGGAGTCATGAGAGAGGACATTAACAGGAAGGGGGACATTACTCTGACTCCTCAGAATGGATTCTGGACTGTGGAACTGAGGAATAAGGATGAGTATAAGGCTCATGCTGGTCCTGATGTCCTcctcacactgagagagaaggtGGAGAAGGTGGGGGTGTTTGTTAATTATGAAGAGGGTCAGGTCTCCTTTTATGATGTGGAGTCCAGCTCTCATATCTATTCTTTCACTGCTCAGTCTTTCACTGAGAAACTCTATCCATTCTTCAGTCCTCAGTACAATGGAAGGGGTAAAAATTCAGcaccactgatcatcactgCTGTTAATGAATGAATCTGTTTTATCTATTACatgtttaactgtttttaatttttatcacAGCTGGCTATAATCATcaattacataataaaacaaaataatttgtgtaaaatatgatttaagacaaatgttattttgtataaaatagAATTAATAAACTCTGTTAacagtgtgtttacatgaaCACTAATAATATGATCATTATCCACGTTCAGCAGTTAAAATCAGATTGAAGCTGTTATTAGATGGAATTCTATAAAGACTCTGTGATGTTAGTCTAGTTACTGGACtattcagtgtttgtgtgctgttaatctgatttctctttctctggaaCTCAGAAAGTAGAAAGTTAACAGCTCAGAAAAGGACAGAGGTTTGTGTGATTTCTAActgtaaaacacagaaaagtgaCTCCATTTGGGGGTAAAAGTGTCAGAAAGTGTAAACTTTAAAAACCGTCCTTCTTCTTCAGTGGTATGTGTTTAGATCTGTGATGGTGTTTGGTTTAAtcagcagtgtgttagtgcttCACACGCCACATGAAATTAATAAAGGTCCAAAAATGCAGTTTACTACTAGTTTATCAAGTTTAGTATTAAGAGATTTATTACTAAAGTGGAAAATGATGGAACACAATTTAGTATGTACAGTTACACAGAGCTGAGATGAGACAATGCTCTAATTGTGctctaaatatataaatattttttttatttaaatgttttgtactCAGTGGTGTTCATGCTGTTTTGAAGCTTGAAttctttattattagtcttgaTCTATTGTTAAAGTTTTTACAACTTCACAGTAAACCCAGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936774.2 False 2254 mRNA 0.40 8 10998592 11015333
XM_034303247.1 True 2397 mRNA 0.39 11 10989215 11063528

Neighbor

gene id symbol gene type direction distance location
LOC117596976 LOC108267929 coding upstream 649 10964062 ~ 10988566 (+)
LOC117596975 LOC108267982 coding upstream 26656 10944179 ~ 10962559 (+)
LOC113539892 LOC108267929,LOC108261535 coding upstream 49744 10918503 ~ 10939471 (+)
gmpr2 gmpr2,LOC108267954,LOC108440043,LOC107753927 coding upstream 71665 10910916 ~ 10917550 (+)
slc7a8a slc7a8a,LOC108267955,LOC107668787,LOC107753926,LOC108440039,LOC107742270,LOC107691931,LOC107562402 coding upstream 83657 10885506 ~ 10905558 (+)
LOC113539896 LOC108261535 coding downstream 27453 11090981 ~ 11111094 (+)
LOC113540324 NA coding downstream 66647 11130175 ~ 11137426 (+)
mmp14a mmp14,mmp14a,LOC107691938,LOC107753930 coding downstream 96393 11159921 ~ 11171340 (+)
ajuba ajuba coding downstream 120207 11183735 ~ 11191994 (+)
dhrs4 dhrs4,dhrs1,LOC103023174,LOC107753983,LOC108440044,LOC107742330,LOC107563424 coding downstream 177146 11240674 ~ 11244577 (+)
G62416 NA non-coding upstream 79073 10907025 ~ 10910142 (+)
G62373 NA non-coding upstream 124354 10864655 ~ 10864861 (+)
LOC117596985 NA non-coding upstream 172663 10815750 ~ 10816552 (+)
trnak-cuu_20 NA non-coding upstream 457687 10531456 ~ 10531528 (+)
trnan-guu_13 NA non-coding upstream 458171 10530971 ~ 10531044 (+)
G62549 NA non-coding downstream 113501 11177029 ~ 11193851 (+)
LOC117596983 NA non-coding downstream 119242 11182770 ~ 11183734 (+)
G62554 NA non-coding downstream 151627 11215155 ~ 11215743 (+)
G62572 LOC108261673,LOC108267931,LOC108267740,LOC108267738,LOC108267932,LOC108267935,LOC108267938 non-coding downstream 211911 11275439 ~ 11366783 (+)
G62585 LOC108267738,LOC108267739,LOC108267932,LOC108267937,LOC108267938,LOC108267241,LOC108267941 non-coding downstream 256569 11320097 ~ 11360515 (+)
c4h4orf48 c7h4orf48 other upstream 325804 10657357 ~ 10663411 (+)
trnak-cuu_19 NA other upstream 493745 10495398 ~ 10495470 (+)
trnak-cuu_18 NA other upstream 497346 10491797 ~ 10491869 (+)
trnak-cuu_17 NA other upstream 498565 10490578 ~ 10490650 (+)
trnak-cuu_16 NA other upstream 499779 10489365 ~ 10489436 (+)
LOC117596972 LOC108267738,LOC108267932,LOC108267931,LOC108267739,LOC108267937,LOC108261673,LOC108267938,LOC108267933,LOC108267935,LOC108267740 other downstream 527187 11590715 ~ 11605230 (+)
si:ch211-200p22.4 LOC108267499,LOC108434851 other downstream 581373 11644901 ~ 11705336 (+)
si:dkey-112a7.4 LOC108268066 other downstream 1228963 12292491 ~ 12295133 (+)
tmem88b tmem88,bcl6b,LOC108267673 other downstream 2143129 13206657 ~ 13219859 (+)
slc16a13 slc16a13 other downstream 2211934 13275462 ~ 13285834 (+)

Expression


Co-expression Network