LOC113540334 (LOC108267980)


Basic Information

Item Value
gene id LOC113540334
gene name LOC108267980
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 10333469 ~ 10344131 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936775.2
GTTATGGTTTGACGTAGATGAACGATGTTACTAGCCTAACAGTTTGGTAAACTAATCCCTTATTTCAACATTCATGTTGCATTTTACACAGACACTGAGATTCACTTGAAAACAATGATAAGGAAATGAATAGTAAGTAAAGAGGAAAGCAGCAGTACTACAGCTTTGGACTGCCGTTATCTTTTGGCTATGATTAAGCTTGCCCTGATGAGCAACTGTGAGGACTGGAGACCTCTCTGCTTCTGGAGTTTCAGCCAAAATTCAGTGAACTTGTGAGCTGGATTTTCTCCCTTTAGTTGGTCAGTGAAAATATGGGAAGTCAGATATCCAAGCAAGCTGATCAGCAGCCTTTACTAGATGATACAGATGaagAACCACTCATTGAGAAGATCTCAGTTGTGCTTATGGGACATCATGGAGTTGGGAAGAATACAGTTGGAAATGCTATTCTGAAGAAGAAAGCCTTCAGATTCCAGGATAGCTCTAAGAACTATTACTTGAAGGATGAAAACACAACATTTGACAGACATGTTACTGTAACTCGTGTCCCAGGCTGGTCTGCAGATTTAAACTCTGAAAAGAATAGGCAACTTTGGCAAGTGATTAAAGACAGTGTGCGATCAGTTGATGATGGACCCCATGCTATTATACTGGTTGTTGATAAGAACACTGAACCTGCAGAGACGAcaaaagagaaattaaaacaACTCCTGGGTGATAATGTTTTCCAGCATATTTTAATAACTTCAGTGGATGCAAAAAACATTGTGGTTTATCACAGTGCTATAAAACAAACCATCATTAACAGATGTAAATATCACTTCTTTGTAAGATGCACATGTGGAAAGCAAAATAGAAAGCTGATCGAAACAATTGAGGACTTTATTGTATATAAGGATGACATTCGTTTCTACGCTATGGGAAAGAAGGCACCAAACCTTGATCTCCAGCATCAGGATCTGGCTAACCTTGTAAATGGACTAAAACACAAAATTTCAGCTCTCTCTGACTCCCTGGATTCCAACAtgtatgtaataaaatcaaaaaatgctgaaataaggGACCTAAAACGTCTGCTGAAAGAAAAGGAGGATATGCTGAGAGCCAAGGAGGAGGAGATAGAAAAGTTAAAGTCAAATCAAAATCACACAGAGCTCTCTGTCCTGCACAAAAAGACTGAGCAGCTTGAGCATGCAGCAAAGCGAGCAGAAAAGTTTCAGCGAAAGATGAAAGAGTTTCAAAGAAATATTggtgaaatggaaaaaaaaattgaagaaaaaaataaagagatagaagaactggaaaaagaaaatcaagcaTTGAAAtctcaaaatgaaaataaaaaaagggcaAAGCCATCATCCATGACTGGGCCGAGGCAGAAGGGTACTAATTCAATTGAATTAATCTCAGTGACCTCAGCAGaaaCATTATTGGGCGATGAAGTATTTCAAGCCAGTGAAGTCCACAGAGGTGTGCGATTTCTGAAGAAAAACCGCAAAGCTCATTGAAAGAATTGTGGCGGTGAAGCCCATTGTTGATGAACTGCTTCAGTTTATCGGCCACCATAAATATGAGAAGATTCTACAAGCTCCAACTGAGTATGAGCAAAAGAGACAGCTCTACGACATAATGGATAAAGGCGGAGCAAAATTGCAAATAGAGTTCTACAAATGCCTGTTAAAACATGAGAAATATCTTGTTGAAGACTTAGAAAAGTCaccataaaatacaaaacactgGTAAGCCTTAAGAATGGGAAGGTTCAGTTTCTAAAATAGACATAATTTCTTTTCTGGGAAAAAACTAATGGACAGATGAGATGAACAACTGTATcataatgagaaaatgagaaaattgtggagagaaaaaaatgattgcTATCCAAGCAGATTATCTAATCAGACTGCCTAATCTAACAAACTAAAAGCCTTCAACTCTTGAAACAGTGCAATGCCTTCAAATGTACTGCTAAAACAACTGTGGAGTTTATCAGTATCAAAAAATTCTTCAGGGAATGTTCTTCACTGGGTGAGACACTTACTCAAGAGAATAAGAAATGTTAAAAGTCTCGAAAAATGAAACTGTAAGTGAAAATCGCTACAGGCAAAAAGTCCTGAAAAGCAATAAGCGAATAAAGCCAGATTTCAGGTCTGACAGAGCATCGCCCAAGAAGATACATATCATTTGCTGTTATTTGTAGCTACTGTTGATAGCAAAGTATTTGCAACTATTTTTCCGGAATCAATTCCTGTAACAGTGGGGACAAGGAAGGAGAATTCACCTTGGATTaggatgccagttcatcacTGGGCACCttgcacacattcattcacaccaaggggcaatttagtgtcgCTAATCTGtgtacctgcatgtttttggacattgggaggaaaccagaaaacctggaggaaacccctgcaAACACGGAGAGAACTCTCTGCACACACAATAACCCAGTCAAGATACATTCAAGATACATACTACAGCTTTGATTTGTTAAACATTTGAGAGCCAACCAGCTCCAGCTCCATTAACCTCAGGGAAGTCCTGTAACAGACATGGCTGAATATATCTGAGGAACACCTGGAAAAAAAGTTGGGgtttttgtcattgttgttgtttaaggtttaagttttgttttttttttttaatttattaatgtattgttgaatttatttagttaatGTCTTAATACCTGCATGTGTGTTCTTGTCTTCTTAAACATGATTCGCTTTAATATGTTAgttcaaatgaatgaaaaaaccccactcatttattaaaacactgtTATGAAAGATAAAACATTTAGGAGAAGAATGTTTTACATTCAGTTTTGATATGGCATCAATGGAAGAGAGTTTGGTTATAAGAAGTGTCAAGGCTGCTCAGCCCTCTGTTCAACGATGATGTCTGTGCTCGCTTTGTGTGGCACTTGTCTTGCTTTGTGGCTTTGTGGATCCAGGGTGCAGCATTCATATGTGTGGTGCCAGGTGGCATTGCAGCCGTGTGGGCCACAGAGTGTGTACCAGCGAAAGCTTTCTCTGAGAAAGTGATCAGCCACATCATTGAAATTAGATCACGGCAGATTTTGAGGGACTCTGCTaaccagtctgtctgtctgttttataatttataactgAATATagaatatgttattattattattactctcaTTCTATTATGCAGATGCAATTTTaattgctttaacaaacctaCAAAGCTTACTTAAAATCTACATCAAGAAACTAGCTTGCTAATGTTAGATAGCTAGATCATGTTCTTACTGAGTTGCATATTGTTGGTTTAGTTAACTAGCTTTGTTCAgctaataaatgaatttatggCATTTGACTCGGCAGCACCTCAGCTTTCACAGCCACAACATCTTCaattttgtaattgtaaatcATAACGTCTTGAACATGCCTATGTACAACAAGGTTTACAAGACTTGTATGCCTTCAATTTCTCGCTAGTGCTAGAGCACTGCTTAGAATCATTTAGCCACTCACAGGGCTCCAAGCCATAATGATCTTCTAGAGTCACACCATTTGAAAGTGTTAGTTTGGCCAAATAGCACTACCTGTCTTTTTGTGGTTATCCTTAAGAATATGTGAATAACATTTAGCTAATGTCAGTTagattcctaaataaaattcctGATAGATTCTTCAGTTAGAATATAACCAAGTAGTTGCTAGGCTACTCAGGTctttatgcaaccaggttgtgTATGCATCTCTTTACAAATACCAAAGGAGTGTATATATCCTTCAAAAACAAGTTCTCTCTAAACTCTCGGTTGCATGATTCAGCTGGTTTGCTAAGCCACTGTTGCATCTGTTTACGTTCATTGCAAGGTGCAGTGTATCTCAAacattgttattaaaataaGTGAAGACCTTCAACTAAGTGATAAATACTGTGCAAGAGAATAATACATACCATGACAAAGCtattttaaattctattttcATGCTGGAATTTTCCTTTAAGTTTTGAATATAAGGGCTAAGaaacacttcatttaaaaattataattatctTGTTCTTTGGTCTGTCCTACATCAAAGTTTAGTTGAAGCATCTTATTTTAAAGTTAGATGCAAATGCAATAAAAGATAACTGCCTATGCAGTACACATCTATTTATCATTTCCAGCTGAAGGTATTAGTTACGGTAGACAATCTGTTCTCTCTTCCTGCAGCTTTCAGTGTGAAACTGTTTATCTACCATTTATATAAAGTCCATTGAAAGTGCTTTTGTGCATCTGAGATCAGAGTGACTCAGCAAGTTTATTGCATTTATCACTTTTGCATCAGAATACCagttttatttggttttctctttcacttct
>XM_034303264.1
GTTATGGTTTGACGTAGATGAACGATGTTACTAGCCTAACAGTTTGGTAAACTAATCCCTTATTTCAACATTCATGTTGCATTTTACACAGACACTGAGATTCACTTGAAAACAATGATAAGGAAATGAATAGTAAGTAAAGAGGAAAGCAGCAGTACTACAGCTTTGGACTGCCGTTATCTTTTGGCTATGATTAAGCTTGCCCTGATGAGCAACTGTGAGGACTGGAGACCTCTCTGCTTCTGGAGTTTCAGCCAAAATTCAGTGAACTTGTGAGCTGGATTTTCTCCCTTTAGTTGGTCAGTGAAAATATGGGAAGTCAGATATttatgttttTTCTTGGTTAATCTACAGCCAAGCAAGCTGATCAGCAGCCTTTACTAGATGATACAGATGaagAACCACTCATTGAGAAGATCTCAGTTGTGCTTATGGGACATCATGGAGTTGGGAAGAATACAGTTGGAAATGCTATTCTGAAGAAGAAAGCCTTCAGATTCCAGGATAGCTCTAAGAACTATTACTTGAAGGATGAAAACACAACATTTGACAGACATGTTACTGTAACTCGTGTCCCAGGCTGGTCTGCAGATTTAAACTCTGAAAAGAATAGGCAACTTTGGCAAGTGATTAAAGACAGTGTGCGATCAGTTGATGATGGACCCCATGCTATTATACTGGTTGTTGATAAGAACACTGAACCTGCAGAGACGAcaaaagagaaattaaaacaACTCCTGGGTGATAATGTTTTCCAGCATATTTTAATAACTTCAGTGGATGCAAAAAACATTGTGGTTTATCACAGTGCTATAAAACAAACCATCATTAACAGATGTAAATATCACTTCTTTGTAAGATGCACATGTGGAAAGCAAAATAGAAAGCTGATCGAAACAATTGAGGACTTTATTGTATATAAGGATGACATTCGTTTCTACGCTATGGGAAAGAAGGCACCAAACCTTGATCTCCAGCATCAGGATCTGGCTAACCTTGTAAATGGACTAAAACACAAAATTTCAGCTCTCTCTGACTCCCTGGATTCCAACAtgtatgtaataaaatcaaaaaatgctgaaataaggGACCTAAAACGTCTGCTGAAAGAAAAGGAGGATATGCTGAGAGCCAAGGAGGAGGAGATAGAAAAGTTAAAGTCAAATCAAAATCACACAGAGCTCTCTGTCCTGCACAAAAAGACTGAGCAGCTTGAGCATGCAGCAAAGCGAGCAGAAAAGTTTCAGCGAAAGATGAAAGAGTTTCAAAGAAATATTggtgaaatggaaaaaaaaattgaagaaaaaaataaagagatagaagaactggaaaaagaaaatcaagcaTTGAAAtctcaaaatgaaaataaaaaaagggcaAAGCCATCATCCATGACTGGGCCGAGGCAGAAGGGTACTAATTCAATTGAATTAATCTCAGTGACCTCAGCAGaaaCATTATTGGGCGATGAAGTATTTCAAGCCAGTGAAGTCCACAGAGGTGTGCGATTTCTGAAGAAAAACCGCAAAGCTCATTGAAAGAATTGTGGCGGTGAAGCCCATTGTTGATGAACTGCTTCAGTTTATCGGCCACCATAAATATGAGAAGATTCTACAAGCTCCAACTGAGTATGAGCAAAAGAGACAGCTCTACGACATAATGGATAAAGGCGGAGCAAAATTGCAAATAGAGTTCTACAAATGCCTGTTAAAACATGAGAAATATCTTGTTGAAGACTTAGAAAAGTCaccataaaatacaaaacactgGTAAGCCTTAAGAATGGGAAGGTTCAGTTTCTAAAATAGACATAATTTCTTTTCTGGGAAAAAACTAATGGACAGATGAGATGAACAACTGTATcataatgagaaaatgagaaaattgtggagagaaaaaaatgattgcTATCCAAGCAGATTATCTAATCAGACTGCCTAATCTAACAAACTAAAAGCCTTCAACTCTTGAAACAGTGCAATGCCTTCAAATGTACTGCTAAAACAACTGTGGAGTTTATCAGTATCAAAAAATTCTTCAGGGAATGTTCTTCACTGGGTGAGACACTTACTCAAGAGAATAAGAAATGTTAAAAGTCTCGAAAAATGAAACTGTAAGTGAAAATCGCTACAGGCAAAAAGTCCTGAAAAGCAATAAGCGAATAAAGCCAGATTTCAGGTCTGACAGAGCATCGCCCAAGAAGATACATATCATTTGCTGTTATTTGTAGCTACTGTTGATAGCAAAGTATTTGCAACTATTTTTCCGGAATCAATTCCTGTAACAGTGGGGACAAGGAAGGAGAATTCACCTTGGATTaggatgccagttcatcacTGGGCACCttgcacacattcattcacaccaaggggcaatttagtgtcgCTAATCTGtgtacctgcatgtttttggacattgggaggaaaccagaaaacctggaggaaacccctgcaAACACGGAGAGAACTCTCTGCACACACAATAACCCAGTCAAGATACATTCAAGATACATACTACAGCTTTGATTTGTTAAACATTTGAGAGCCAACCAGCTCCAGCTCCATTAACCTCAGGGAAGTCCTGTAACAGACATGGCTGAATATATCTGAGGAACACCTGGAAAAAAAGTTGGGgtttttgtcattgttgttgtttaaggtttaagttttgttttttttttttaatttattaatgtattgttgaatttatttagttaatGTCTTAATACCTGCATGTGTGTTCTTGTCTTCTTAAACATGATTCGCTTTAATATGTTAgttcaaatgaatgaaaaaaccccactcatttattaaaacactgtTATGAAAGATAAAACATTTAGGAGAAGAATGTTTTACATTCAGTTTTGATATGGCATCAATGGAAGAGAGTTTGGTTATAAGAAGTGTCAAGGCTGCTCAGCCCTCTGTTCAACGATGATGTCTGTGCTCGCTTTGTGTGGCACTTGTCTTGCTTTGTGGCTTTGTGGATCCAGGGTGCAGCATTCATATGTGTGGTGCCAGGTGGCATTGCAGCCGTGTGGGCCACAGAGTGTGTACCAGCGAAAGCTTTCTCTGAGAAAGTGATCAGCCACATCATTGAAATTAGATCACGGCAGATTTTGAGGGACTCTGCTaaccagtctgtctgtctgttttataatttataactgAATATagaatatgttattattattattactctcaTTCTATTATGCAGATGCAATTTTaattgctttaacaaacctaCAAAGCTTACTTAAAATCTACATCAAGAAACTAGCTTGCTAATGTTAGATAGCTAGATCATGTTCTTACTGAGTTGCATATTGTTGGTTTAGTTAACTAGCTTTGTTCAgctaataaatgaatttatggCATTTGACTCGGCAGCACCTCAGCTTTCACAGCCACAACATCTTCaattttgtaattgtaaatcATAACGTCTTGAACATGCCTATGTACAACAAGGTTTACAAGACTTGTATGCCTTCAATTTCTCGCTAGTGCTAGAGCACTGCTTAGAATCATTTAGCCACTCACAGGGCTCCAAGCCATAATGATCTTCTAGAGTCACACCATTTGAAAGTGTTAGTTTGGCCAAATAGCACTACCTGTCTTTTTGTGGTTATCCTTAAGAATATGTGAATAACATTTAGCTAATGTCAGTTagattcctaaataaaattcctGATAGATTCTTCAGTTAGAATATAACCAAGTAGTTGCTAGGCTACTCAGGTctttatgcaaccaggttgtgTATGCATCTCTTTACAAATACCAAAGGAGTGTATATATCCTTCAAAAACAAGTTCTCTCTAAACTCTCGGTTGCATGATTCAGCTGGTTTGCTAAGCCACTGTTGCATCTGTTTACGTTCATTGCAAGGTGCAGTGTATCTCAAacattgttattaaaataaGTGAAGACCTTCAACTAAGTGATAAATACTGTGCAAGAGAATAATACATACCATGACAAAGCtattttaaattctattttcATGCTGGAATTTTCCTTTAAGTTTTGAATATAAGGGCTAAGaaacacttcatttaaaaattataattatctTGTTCTTTGGTCTGTCCTACATCAAAGTTTAGTTGAAGCATCTTATTTTAAAGTTAGATGCAAATGCAATAAAAGATAACTGCCTATGCAGTACACATCTATTTATCATTTCCAGCTGAAGGTATTAGTTACGGTAGACAATCTGTTCTCTCTTCCTGCAGCTTTCAGTGTGAAACTGTTTATCTACCATTTATATAAAGTCCATTGAAAGTGCTTTTGTGCATCTGAGATCAGAGTGACTCAGCAAGTTTATTGCATTTATCACTTTTGCATCAGAATACCagttttatttggttttctctttcacttct

Function

NR:

description
PREDICTED: uncharacterized protein LOC108267980 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936775.2 False 4363 mRNA 0.37 6 10333469 10344131
XM_034303264.1 True 4390 mRNA 0.37 6 10333469 10344131

Neighbor

gene id symbol gene type direction distance location
LOC117596978 LOC108267983,LOC108267929 coding downstream 13269 10308651 ~ 10320200 (-)
LOC113547269 NA coding downstream 96857 10231674 ~ 10236612 (-)
LOC113538503 LOC108261535 coding downstream 143541 10167917 ~ 10189928 (-)
LOC117597105 LOC108267929 coding downstream 190040 10111162 ~ 10143429 (-)
LOC113540311 LOC108267981 coding downstream 226940 10095779 ~ 10106529 (-)
f13a1b LOC108267979,LOC108411459 coding upstream 2149 10346280 ~ 10359403 (-)
tex261 tex261,LOC107755640 coding upstream 54422 10398553 ~ 10404916 (-)
shtn2 LOC108267975 coding upstream 61981 10406112 ~ 10416565 (-)
vax2 vax2,LOC107697471 coding upstream 86158 10430289 ~ 10448477 (-)
c4h20orf27 c7h20orf27,cunh20orf27,si:ch211-74f19.2,LOC107755635 coding upstream 116088 10460219 ~ 10474141 (-)
LOC113540369 LOC108267738,LOC108267937,LOC108267740,LOC108267931,LOC108267932,LOC108267929 non-coding downstream 122237 10202231 ~ 10211232 (-)
LOC113540700 NA non-coding downstream 291690 10041567 ~ 10041779 (-)
LOC117597227 NA non-coding downstream 292775 10040482 ~ 10040694 (-)
LOC113540709 NA non-coding downstream 293882 10039380 ~ 10039587 (-)
LOC113540720 NA non-coding downstream 294703 10038554 ~ 10038766 (-)
G62108 LOC108267978,LOC108411458 non-coding upstream 19881 10364012 ~ 10364892 (-)
G62109 LOC108267978 non-coding upstream 24190 10368321 ~ 10370563 (-)
G62125 NA non-coding upstream 130639 10474770 ~ 10483928 (-)
LOC117596989 NA non-coding upstream 153390 10497521 ~ 10499087 (-)
G62167 NA non-coding upstream 189942 10534073 ~ 10534422 (-)
LOC113540372 NA other downstream 253232 10078688 ~ 10080237 (-)
cxcl19 LOC108267987 other downstream 260240 10070406 ~ 10073229 (-)
G61900 NA other downstream 291703 9605727 ~ 10041766 (-)
G61972 actn3,LOC106577856,LOC106608893 other downstream 528151 9776278 ~ 9805318 (-)
G61537 NA other downstream 994724 9337826 ~ 9338745 (-)
trnan-guu_9 NA other upstream 142537 10486668 ~ 10486741 (-)
trnan-guu_10 NA other upstream 146217 10490348 ~ 10490421 (-)
trnan-guu_11 NA other upstream 147459 10491590 ~ 10491663 (-)
trnan-guu_12 NA other upstream 151034 10495165 ~ 10495238 (-)
gba2 gba2,LOC107749818,LOC107741462 other upstream 194114 10538245 ~ 10562006 (-)

Expression


Co-expression Network