si:ch211-1o7.2 (ankrd53)


Basic Information

Item Value
gene id si:ch211-1o7.2
gene name ankrd53
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 10392375 ~ 10396736 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936782.2
ACAAAACACTTGCAGGTTGCTACTACACGAGTATCACCATAGTAACAGCAGAACAGGTCAACAAATCTGTCATGGAGGGCGTGTGCGCGCGAAAGCTCCCAGCCGGAGACTTGTTTCATGCCGCAGTGTCTGGAGATCCTGAGTGGCTGGGTTTGAGTCTGGAGAGAGTGCAGTCACCAGGTCAGCAGCACAATAAACAGggtctTACAGTGCTCCACGTGGCTGCTCAACACGGTCAGCTAAATTGCTTGAAGCTGCTTCTGGAATCTTGTATTGTGGATGTGAACGCAAGCTGTCTGCGTGGCTGGAGACCGTTACACATGGCGCTGAGCCCAGAGAGCAAGCCAAACTCTTACTGCTGCCTCACATATCTGCTGGAACATGGAGCAGAGCCCAATGTTTCCACAGATGAAGGACTGACCCCACTGCACATGGCCGCAGCTGAAGgcctgagagagtgtgttgaAACGTTGGTTAGGGTTGGAGCAGACACTCACGCACGTGATAGCCGAGGACACACACCCCTCGAACTCGCTTGCCTGTGGGGTCACAGGGTTGTTGCCAGGATTCTTAAAAACGCAATGTGGCATAGAGATAAGAAGAGAGACATGCAGAAACGCCAAGAACTGCAGAATCTCAAACAGAACATGATCAGGATGCACAGGAAAGCAGAGGGAATGCAGAAgTTAGCCAGAGAGGCCATTAACAAGCAGAAGGTATCCGAGTGGGCTGAAAGCAAGGGTCTTCCCTGTCTCAGGTCTCCGACAACGGGCTTGTGGACATTAAAGCATCACTGCTGCCATTCTGCCAAGCCTGTCACAAAACACCATGCAGCTGAATCAAGAGAAATGTGGAACATCTCACCCAACCCATCAAGACCTCCTCCAGCAAACATCAGCAGATCTAGCACAGTGAGAATCGGTGTCCATCCAGAGGAAGCAGTAGACGAGCCTGATCTGCACCAGAGTGTGACTCTGCATAGTTCTGGAAATGGGCACGTCCATTGCACTGCGTCATGGGATGATATTCCACAGCCGATGCCTGACCTGCCACTGGATGTCATTCAGAAAGGTTTGTTTCCATCTGAATTCCCCTCGCGAATTTCTGGTCCACTTCAGCTCCAGTGCAGCAGCGTGCTGGATTTGCCTCATCGAGGAGGTATTCATGGAACTGAAGCTTCTCCCTGGACCGAAGTGGCAATGCATCTGGCTGAGGAGCTCCAGCCTGGCCGTTACTGAATGCTAGAATCACTGGATTGACTGAACAGGGCTGGAGTGGTCAATCCAGATACAGGCAAAACTATACAACATGACAACATGCTACCTACTCAGTCCTTTTAGATATTCTGTGAAAATACAtgacatggacaaaaaaaaaaaaataaaagcttattgtcaagaaaaaatatatttgttgttTGTACTTTTGAtagatttttaataaagaaatttattgccttaa

Function

symbol description
ankrd53 Predicted to be involved in mitotic metaphase plate congression; regulation of microtubule cytoskeleton organization; and regulation of mitotic cytokinesis. Predicted to be active in spindle pole. Orthologous to human ANKRD53 (ankyrin repeat domain 53).

NR:

description
ankyrin repeat domain-containing protein 53 isoform X2

GO: NA

KEGG:

id description
K21441 ANKRD53; ankyrin repeat domain-containing protein 53

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936782.2 True 1461 mRNA 0.49 7 10392375 10396736

Neighbor

gene id symbol gene type direction distance location
LOC113540310 LOC108267978 coding upstream 21721 10362990 ~ 10370654 (+)
LOC117597107 LOC108267981 coding upstream 111563 10270843 ~ 10280812 (+)
LOC113538341 NA coding upstream 125617 10236752 ~ 10266758 (+)
LOC117597106 LOC108267738,LOC108267931,LOC108267929,LOC108267937 coding upstream 167772 10223782 ~ 10224603 (+)
ino80b ino80b coding upstream 395327 9992956 ~ 9997048 (+)
trnak-cuu_4 NA coding downstream 77882 10474618 ~ 10474690 (+)
trnak-cuu_5 NA coding downstream 79121 10475857 ~ 10475929 (+)
trnak-cuu_6 NA coding downstream 80353 10477089 ~ 10477162 (+)
trnak-cuu_7 NA coding downstream 81566 10478302 ~ 10478374 (+)
trnak-cuu_8 NA coding downstream 82793 10479529 ~ 10479600 (+)
G61842 NA non-coding upstream 33411 10357814 ~ 10358964 (+)
G61785 LOC108267738,LOC108267740,LOC108267935,LOC108267929 non-coding upstream 94811 10165529 ~ 10297564 (+)
LOC117596987 NA non-coding upstream 101691 10289874 ~ 10290684 (+)
LOC113540370 NA non-coding upstream 296307 10024585 ~ 10096068 (+)
G62131 NA non-coding downstream 100394 10497130 ~ 10497360 (+)
LOC117596986 NA non-coding downstream 102539 10499275 ~ 10506477 (+)
trnan-guu_13 NA non-coding downstream 134235 10530971 ~ 10531044 (+)
trnak-cuu_20 NA non-coding downstream 134720 10531456 ~ 10531528 (+)
LOC117596985 NA non-coding downstream 419014 10815750 ~ 10816552 (+)
G61786 LOC108267738,LOC108267931,LOC108267740,LOC108267937,LOC108267932,LOC108267739,LOC108267929,LOC108267241 other upstream 126096 10167846 ~ 10266279 (+)
si:ch211-168d1.3 LOC108267908,LOC108440265 other upstream 509662 9860894 ~ 9882713 (+)
gal3st3 gal3st3 other upstream 560095 9807321 ~ 9832280 (+)
rbm14b rbm14b,LOC108267504,LOC108440267,LOC107567604,LOC107728024 other upstream 618326 9758460 ~ 9774049 (+)
G61359 LOC108267272,LOC108267273 other upstream 1495646 8894470 ~ 8896729 (+)
trnak-cuu_13 NA other downstream 78032 10474768 ~ 10486042 (+)
trnak-cuu_14 NA other downstream 90166 10486902 ~ 10486974 (+)
trnak-cuu_15 NA other downstream 91404 10488140 ~ 10488212 (+)
trnak-cuu_16 NA other downstream 92629 10489365 ~ 10489436 (+)
trnak-cuu_17 NA other downstream 93842 10490578 ~ 10490650 (+)

Expression


Co-expression Network