rgp1 (rgp1,LOC107741481,LOC107668635,LOC107588171,LOC107691996)


Basic Information

Item Value
gene id rgp1
gene name rgp1,LOC107741481,LOC107668635,LOC107588171,LOC107691996
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 10562232 ~ 10569484 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936783.2
GCCACGGAGCCCTCTATGATGGCCGAACAAAATATATACCGGCGTTTACGTGcttttgttttaacatttttaaaagtctgATAATGTATTCATACACAAAAATAGATTAGACAAGACATTATGTAAAGTACCCAAGCAGCAGTGTAAGGATAGCGCATTTCTACACATAACAGCTCGTCTGCAGTAGTGCAAACGCAGGGAAAAGTCATACTTGGACATCTCAATTAGTCCacagcttgttttgtttttgaggcTGAAGCGTCTCTGCCGGTTTCTGTTCAGTCGTGTCATTTTTTTGTCAATTTGAGCATAAcgctcttaattttttttcttttatcaagATGATTGAGGTGGTGGCCTCCATGGCTCGGGGACCTGTGTTTCTGGCTGGAGAGGTGCTGGAGTGCCTCATCACCTTCACTAATCCCATGTCCCATCTCTCCACTAGTGCAAGCAGTGAGATGCTTGCATGGGCCAGTGCTCAGATCCACTGCCAGTTCCATGCCAGTGAGAGCCGTGTGGCTCTGCCCACACAGGGCACCAAGCAAGATGTGCAGGCAGAGAATGACACTGTGCTCATCCCCAGCAGAGGGGAGCGAGGCCAGTGCATGCTGGACACTCCGCCCAAGATCCTGTTCTGTGACCTGCGGCTAGACCCTGGAGAGAGCAAAACCTACACTTACAGTGAGCTCGTCCCCATGGACGGTCCTCCTAGTTTCCGTGGTCAGGCGGTGAAATACGTATACAAGCTGACGATTGGCTGTCAGAGGGTCAACTCTCCAATCAAGCTGCTGCGTGTCCCTTTCAGAGTGCTCGTACTGCATGgcatGCCTGAGCCCCCTTTCCCACAGGATGAGGAAGTGTCACCCACAAACCCTTTCctggaagaggaggagggaggaagaagAGACACGAGACCACTGGAGCGAGCGCTAGACATGCTGATGATCACTACCTCACGCCGCTGTCCACATCTGTTTAATATCACTAACATGCGAGGGAAGGTGGCCAAATTCTGTATCTTTAAGACTGTATACAGACTAGGAGAGGACATCATTGGCACATTTACCTTTTCAGAGGGAGATATCCCATGTCTACAGtactcagtgagtctGCAGAGTGAGGAGGAGGTCCATGAGCAGTACCAGAGGCGACCAGCTCAGGCGGTCAGTGTCACAAGTCATGGCCGGCATCTGGAGTCCTGCCTCCACACGGCCTCCAGCCACTTCTCCCTGCCTGTTCCTCTCAACGTTACACCTGGTTTCAGCACCGACATTGTAACCCTAAGATGGCGTCTACACTTTGAGTTCGTCACAGCAAGAGAGCCAGTGGAGCTGCCTACTGTTCTTCAGAACCAATCAGAAGTCACCGTATGGACTGGGGCAGAGCAGGTGGACGTGGACACCTTCAGCTGGGACCTGCCAATCAAAGTGCTTCCCACCAATCCGGCACTGGCTTCATATGTTTCTCAGTTCACAGGGACGAATAGTATCAATATCTGAATTGcgtgtgtttttgtgcttcgtgtgtgtgtgtgcgtgtgtgtgtgcatgcgtgcatgTTCTGATTTTCCTTTATCTGTATTTCCCGATCAAAAACCAGCATCATGATGTTTCTggtcttttatttgtttttatcttgtgtgtatgtatgcggACCTGATTTTAACATTTCAGACATTAACATGGGACCTTTTCCATATTTATTGTATTCCAACTTGGTGAGCTAATGTATATGATTTTACATGAATTCTCCACGGAGGAGTTGctctattttttatatacaaacgTTTTTTCTGTTCATTGTTCAATTCTCTACTCGTGACAAGCTGACAGATTCTCTATTACAGTTATTAACAGTGTTTGAACTCTTGGCAAATAAAAAGAGTAGAATCATAGAAAaa
>XM_034303266.1
GCCACGGAGCCCTCTATGATGGCCGAACAAAATATATACCGGCGTTTACGTGcttttgttttaacatttttaaaagtctgATAATGTATTCATACACAAAAATAGATTAGACAAGACATTATGTAAAGTACCCAAGCAGCAGTATGATTGAGGTGGTGGCCTCCATGGCTCGGGGACCTGTGTTTCTGGCTGGAGAGGTGCTGGAGTGCCTCATCACCTTCACTAATCCCATGTCCCATCTCTCCACTAGTGCAAGCAGTGAGATGCTTGCATGGGCCAGTGCTCAGATCCACTGCCAGTTCCATGCCAGTGAGAGCCGTGTGGCTCTGCCCACACAGGGCACCAAGCAAGATGTGCAGGCAGAGAATGACACTGTGCTCATCCCCAGCAGAGGGGAGCGAGGCCAGTGCATGCTGGACACTCCGCCCAAGATCCTGTTCTGTGACCTGCGGCTAGACCCTGGAGAGAGCAAAACCTACACTTACAGTGAGCTCGTCCCCATGGACGGTCCTCCTAGTTTCCGTGGTCAGGCGGTGAAATACGTATACAAGCTGACGATTGGCTGTCAGAGGGTCAACTCTCCAATCAAGCTGCTGCGTGTCCCTTTCAGAGTGCTCGTACTGCATGgcatGCCTGAGCCCCCTTTCCCACAGGATGAGGAAGTGTCACCCACAAACCCTTTCctggaagaggaggagggaggaagaagAGACACGAGACCACTGGAGCGAGCGCTAGACATGCTGATGATCACTACCTCACGCCGCTGTCCACATCTGTTTAATATCACTAACATGCGAGGGAAGGTGGCCAAATTCTGTATCTTTAAGACTGTATACAGACTAGGAGAGGACATCATTGGCACATTTACCTTTTCAGAGGGAGATATCCCATGTCTACAGtactcagtgagtctGCAGAGTGAGGAGGAGGTCCATGAGCAGTACCAGAGGCGACCAGCTCAGGCGGTCAGTGTCACAAGTCATGGCCGGCATCTGGAGTCCTGCCTCCACACGGCCTCCAGCCACTTCTCCCTGCCTGTTCCTCTCAACGTTACACCTGGTTTCAGCACCGACATTGTAACCCTAAGATGGCGTCTACACTTTGAGTTCGTCACAGCAAGAGAGCCAGTGGAGCTGCCTACTGTTCTTCAGAACCAATCAGAAGTCACCGTATGGACTGGGGCAGAGCAGGTGGACGTGGACACCTTCAGCTGGGACCTGCCAATCAAAGTGCTTCCCACCAATCCGGCACTGGCTTCATATGTTTCTCAGTTCACAGGGACGAATAGTATCAATATCTGAATTGcgtgtgtttttgtgcttcgtgtgtgtgtgtgcgtgtgtgtgtgcatgcgtgcatgTTCTGATTTTCCTTTATCTGTATTTCCCGATCAAAAACCAGCATCATGATGTTTCTggtcttttatttgtttttatcttgtgtgtatgtatgcggACCTGATTTTAACATTTCAGACATTAACATGGGACCTTTTCCATATTTATTGTATTCCAACTTGGTGAGCTAATGTATATGATTTTACATGAATTCTCCACGGAGGAGTTGctctattttttatatacaaacgTTTTTTCTGTTCATTGTTCAATTCTCTACTCGTGACAAGCTGACAGATTCTCTATTACAGTTATTAACAGTGTTTGAACTCTTGGCAAATAAAAAGAGTAGAATCATAGAAAaa
>XM_034303267.1
TAGCCTGGGTAGCTAGCAGTTATCTATCTACAACAGTTTAACTGCAGAGAGAATTAGTTTCTTTAGAATTGTTTATCTTTGGTCACGTGGCTTTATGTAGTAAAAAGGTGTTTGGTTTAAGCTGTATGATTGAGGTGGTGGCCTCCATGGCTCGGGGACCTGTGTTTCTGGCTGGAGAGGTGCTGGAGTGCCTCATCACCTTCACTAATCCCATGTCCCATCTCTCCACTAGTGCAAGCAGTGAGATGCTTGCATGGGCCAGTGCTCAGATCCACTGCCAGTTCCATGCCAGTGAGAGCCGTGTGGCTCTGCCCACACAGGGCACCAAGCAAGATGTGCAGGCAGAGAATGACACTGTGCTCATCCCCAGCAGAGGGGAGCGAGGCCAGTGCATGCTGGACACTCCGCCCAAGATCCTGTTCTGTGACCTGCGGCTAGACCCTGGAGAGAGCAAAACCTACACTTACAGTGAGCTCGTCCCCATGGACGGTCCTCCTAGTTTCCGTGGTCAGGCGGTGAAATACGTATACAAGCTGACGATTGGCTGTCAGAGGGTCAACTCTCCAATCAAGCTGCTGCGTGTCCCTTTCAGAGTGCTCGTACTGCATGgcatGCCTGAGCCCCCTTTCCCACAGGATGAGGAAGTGTCACCCACAAACCCTTTCctggaagaggaggagggaggaagaagAGACACGAGACCACTGGAGCGAGCGCTAGACATGCTGATGATCACTACCTCACGCCGCTGTCCACATCTGTTTAATATCACTAACATGCGAGGGAAGGTGGCCAAATTCTGTATCTTTAAGACTGTATACAGACTAGGAGAGGACATCATTGGCACATTTACCTTTTCAGAGGGAGATATCCCATGTCTACAGtactcagtgagtctGCAGAGTGAGGAGGAGGTCCATGAGCAGTACCAGAGGCGACCAGCTCAGGCGGTCAGTGTCACAAGTCATGGCCGGCATCTGGAGTCCTGCCTCCACACGGCCTCCAGCCACTTCTCCCTGCCTGTTCCTCTCAACGTTACACCTGGTTTCAGCACCGACATTGTAACCCTAAGATGGCGTCTACACTTTGAGTTCGTCACAGCAAGAGAGCCAGTGGAGCTGCCTACTGTTCTTCAGAACCAATCAGAAGTCACCGTATGGACTGGGGCAGAGCAGGTGGACGTGGACACCTTCAGCTGGGACCTGCCAATCAAAGTGCTTCCCACCAATCCGGCACTGGCTTCATATGTTTCTCAGTTCACAGGGACGAATAGTATCAATATCTGAATTGcgtgtgtttttgtgcttcgtgtgtgtgtgtgcgtgtgtgtgtgcatgcgtgcatgTTCTGATTTTCCTTTATCTGTATTTCCCGATCAAAAACCAGCATCATGATGTTTCTggtcttttatttgtttttatcttgtgtgtatgtatgcggACCTGATTTTAACATTTCAGACATTAACATGGGACCTTTTCCATATTTATTGTATTCCAACTTGGTGAGCTAATGTATATGATTTTACATGAATTCTCCACGGAGGAGTTGctctattttttatatacaaacgTTTTTTCTGTTCATTGTTCAATTCTCTACTCGTGACAAGCTGACAGATTCTCTATTACAGTTATTAACAGTGTTTGAACTCTTGGCAAATAAAAAGAGTAGAATCATAGAAAaa

Function

symbol description
rgp1 Predicted to be involved in retrograde transport, endosome to Golgi. Predicted to be part of Ric1-Rgp1 guanyl-nucleotide exchange factor complex. Predicted to be active in Golgi membrane. Orthologous to human RGP1 (RGP1 homolog, RAB6A GEF complex partner 1).

NR:

description
RAB6A-GEF complex partner protein 2

GO: NA

KEGG:

id description
K20477 RGP1; RAB6A-GEF complex partner protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936783.2 True 1903 mRNA 0.47 9 10562232 10569484
XM_034303266.1 False 1705 mRNA 0.48 9 10562232 10569484
XM_034303267.1 False 1687 mRNA 0.48 9 10562648 10569484

Neighbor

gene id symbol gene type direction distance location
trnak-cuu_12 NA coding upstream 77715 10484444 ~ 10484517 (+)
LOC117597108 NA coding upstream 78085 10482489 ~ 10484147 (+)
trnak-cuu_11 NA coding upstream 78946 10483214 ~ 10483286 (+)
trnak-cuu_10 NA coding upstream 80178 10481982 ~ 10482054 (+)
trnak-cuu_9 NA coding upstream 81413 10480747 ~ 10480819 (+)
pik3c3 pik3c3,LOC107691920,LOC107562280 coding downstream 5439 10574923 ~ 10595122 (+)
faah2b LOC108267965 coding downstream 66221 10635705 ~ 10644751 (+)
nat8l nat8l,LOC107691926,LOC107741469,LOC107562319,LOC107753918,LOC107588165 coding downstream 109773 10679257 ~ 10689652 (+)
ptgr1 ptgr1,LOC108267959,LOC107588162,LOC107753922,LOC107668743,LOC107691929,LOC107562349 coding downstream 185393 10754877 ~ 10760025 (+)
si:dkey-11k2.7 ptgr1,LOC108440055 coding downstream 194091 10763575 ~ 10770209 (+)
trnak-cuu_20 NA non-coding upstream 30704 10531456 ~ 10531528 (+)
trnan-guu_13 NA non-coding upstream 31188 10530971 ~ 10531044 (+)
LOC117596986 NA non-coding upstream 55755 10499275 ~ 10506477 (+)
G62131 NA non-coding upstream 64872 10497130 ~ 10497360 (+)
G61842 NA non-coding upstream 203268 10357814 ~ 10358964 (+)
LOC117596985 NA non-coding downstream 246266 10815750 ~ 10816552 (+)
G62373 NA non-coding downstream 295171 10864655 ~ 10864861 (+)
G62416 NA non-coding downstream 337541 10907025 ~ 10910142 (+)
LOC113540371 NA non-coding downstream 450649 11020133 ~ 11022796 (+)
G62549 NA non-coding downstream 607545 11177029 ~ 11193851 (+)
trnak-cuu_19 NA other upstream 66762 10495398 ~ 10495470 (+)
trnak-cuu_18 NA other upstream 70363 10491797 ~ 10491869 (+)
trnak-cuu_17 NA other upstream 71582 10490578 ~ 10490650 (+)
trnak-cuu_16 NA other upstream 72796 10489365 ~ 10489436 (+)
trnak-cuu_15 NA other upstream 74020 10488140 ~ 10488212 (+)
c4h4orf48 c7h4orf48 other downstream 87873 10657357 ~ 10663411 (+)
LOC117596972 LOC108267738,LOC108267932,LOC108267931,LOC108267739,LOC108267937,LOC108261673,LOC108267938,LOC108267933,LOC108267935,LOC108267740 other downstream 1021231 11590715 ~ 11605230 (+)
si:ch211-200p22.4 LOC108267499,LOC108434851 other downstream 1075417 11644901 ~ 11705336 (+)
si:dkey-112a7.4 LOC108268066 other downstream 1723007 12292491 ~ 12295133 (+)
tmem88b tmem88,bcl6b,LOC108267673 other downstream 2637173 13206657 ~ 13219859 (+)

Expression


Co-expression Network