si:dkey-11k2.7 (ptgr1,LOC108440055)


Basic Information

Item Value
gene id si:dkey-11k2.7
gene name ptgr1,LOC108440055
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 10763575 ~ 10770209 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936788.2
tgaaaacataaaataacaagAAGACATAACATCAGGAAAAGCATACAGCCAATCCTTCACAATTCTCCGACCTAATCAAACGCCAAAAGCTTGATAAAATAAGTAGGTCTTCAagtcctttttaaaaatgtccatgcTTGACGAGGATTTTATAGATAACGGTAACACATTCCAGAGTGCAGGAGCTGCAACAGAAAAAGCGCGGTCTCCACTACTCCTCAACCGAGACCGTGGGACAGTTAGGAGCATAGTTTGAGAGGAACGCAGATGACGTTGAGATTGGTAAGAGATTAACATGTCCTTTATATACTCAGGAGCCTGATTGTGCAATGCTTTATTCAGGGATTCACTTATGCCTAGATAAAGtgcattacaataaaccaacTGTGTGGCAATAAAGGCATGCAAAACAGTCTCCAAGTCCTTGTTTGAAAGGATAGGTTTCAGTTTAGACAATTTtcttaactgaaaaaaagatgttttcacAACGCTGTTAACTTGACGATCAAAGCGGATTTCAAAATCGAAAATTACTCCAAGATTCTTCACATAACTATTATTGGACAACCGTCCATAACTTTCAATCAGGTCATTTCCGGGTAGTGTGTTCCCAAACATAATAAACTCAGTCTTATCCTCATttagttgtaaaaaaaattatttgctaGCCATCCCTTTACCTCAGTCAAACACTCATAAAAATTAGCAAAAGATGTACAGCCATCTCATTCCAAAGGAAAATACAGTTGTAGATCATCAGCATACAAGTGATAATTAATATTGTATTGCCTAAAAATTGACCCCAAGGGTAacatatataatgaaaataaagtcgAACTGAGAATTGATCCCTGAGGAACCCCCCAAGTGATAGTCGCAGATGACGAAACATAATTTCCAATTTTAACTGAGCATGTCCTGTCCTACAGATAGGAGGAAAACCACTTAAGGGCTACACCCTTAATCCCAACATAATCTCTAAGGCGTTCTATTAAAATCACATGATCTAAAGTATCGAAGGCTGCACTTAAATCTAACATCATTTAGGCAACACTTTTCCCAGAGTCAATacttaaaaaatatcatttgtaaCCTTTAATAATGTTGATTCTGTGCTGTGTTTGGTCCTAAATCCAGACTGAAAAATATCCATTATGTTGTTTCCAATCAAAAATTCAACAAGTTGATTATGGACAACTTTCTCTAAAATCTTATTCATAAAAGGCAATTTGGTAATAGGcctaaaatttttaaaatcctgtgaATCTAAGTTCATTTTCTTTAAGACTGgttcaataacagcatattctggatttaaataattatgtagCTGTTATTTATTCTATTCTGACGTTCTTTGGGATCTACTCACTGCAGTGCTGAACACGATTGTTTCTTCTGGAGGATCTTAACACTGTGTGGTTTAGTGTTGTGCCCATTCCTGCTCTTGAAGATTCACATTCCAGCAGAGATTCAAATCTAACAGAACTGAGTCTGACATTCCTCCTTCAAACTGGATTACAGTTAGAGCTACACTTTGCAGTAGTGTTGTTACAATACAGTAAATGAATGGGTGATTATCTAACCATTAACTTTTGCAAAAATGCAGAGTAAAATGGGTAtccatctttccttttttttttttcaactcatTTTGTTAAAGCACACTGCCTTTCCTCACAACCACTCTCTCTTTTAGCTTATAATGACCATGTGATAAATACCCACAATgtaagagattttttttggaagagtcattttcaaaaatatcttttcATTTGGATTGAGCTCTTTTAAATTGAACAATTTTCTGTTCTACAAAATcataaatttttaattcatcttcagtaaatgttttatccatgtcagggttatggtggatCCTAAGACTATCCTGGAAGCATTGGATGTAAGGaaagaatacaccctggacagaatacacacatacattcccCCACTTGTTCACACATATGGGCAAATTAGAGTCACCAGTCCATCAACTGGCATGCTATTGGGAggtgttaggaaaccagagagccTGGACACTATTAGTTCTTTAGTAGTTTTTCACGTCCAAGTGAATTAAAAGTTTGAAATTTTAGGGATTCAAAATCCAGATCATTTTACAACATGTGAACTCTTGACACACTGGGTACGACTAATAATCTGCTGAATCACTGTGACCAAGGCTATAAATACACCTTTGTGTAAGTTTTGTGGGAAAGACAAATCTATCAAACTGATAAATGAGCTGAAGTCACTCCTGACTAGCAACATACAATGCCATGTATGTATGCAATGGTTTGTGTTTTGCAGCCATGCAGCTCAACCCTGATCTgatcttttaataaataaatgctgtaagtCAAGCCATCAGAATGTATTGCATGGGcagatattatttttcttcactaAGCCActgtttatatacatattacatatattacatacagcATGCCTTATTTTTCCAACCCCCAGTGCTTGGCGTAAAAATCTGCTGTTGATGGGTGGAGTGCTCGGATATAAAGCATGGTGTTGCAGTGTTTATACAGCAGAGCACTTTAGAAGGAAAGTTTTCACTGCAGCAGAAACATGGTTAAAGCTAAGGTCTGGACACTTCGGAAGCATTTTGTTGGCTTTCCAAAGGAGAGTGACTTTGAGCTTAAAGAGGAGACATTACCTGAGCTTCAAAATGGAGAGGTCCAACTGGAGGCCATCTTCCTCAGCCTTGATCCATATATGAGAGCTGTGAGTTCAACTTTAATGAAAGAAGGTGATGTACAGATTGGAGCTCAGGTTGCAAAGGTACTTCAAAGCCGGAACCCAGCATTTCCTGTGGGCTGTTATGTGGTTGCTCCATGTGGATGGAGGACACACAGTGTGACCAATGGCAAAGCAATTTTTAGCCTTGAAATGACTCGAGTTCTTCCTGATTGGCCCCAAGACGTTCCTCTTTCCTTGGCTGTTGGTGCACTAGGGATGCCTGGTTTGACTGCCCTGTACGGCCTAGAGGAGATTCTGCAGGTGAAGCCAGGTGAAACTGTTCTGGTGAGTGCAGCAGCTGGTGCTGTGGGTACCATGGTGGGACAGATTTGTAAGATTAAAGGCTGTAAAGTGGTGGGTTCTGCTGGGAGTGAGGAAAAAGTGGCCTACCTGAAGGAGCTGGGCTTTGACTACGTTTTCAACTACAAGACCGTAACATCTCTGGATGAGGCACTGAAGCAAGCTTCACCTGAAGGCTATGACTGCTATTTTGAGAATGTTGGAGGTGCTTTCTTTACTGCAGCACTTAGTCAGATGAGGCCTCGAGGACGCATTGCTGTGTGTGGTGCAATATCGCTGTACAACGCCACCACACCTCAGATGTGTCCTTTTCCCCACATGACCATGCTGGCCAAGAGCATTAGGATGGAGGGATTCCAAGTCAGTCAGTGGCCAGAGAAAGATGTGGCATCTGTCAGAAGACTGCTTAAGTGGCTGAAGGAGGGGAAACTTAAGGCCAAAGAAAATGTCACAGTGGGCTTTGAGAAGATGCCTGCTGCCTTCATCCAGATGCTGAGAGGGACAGAACTGGGAAAAGCTGTTGTTAAAGTGTAATGACTTTGCTTTTTGTAATGTCACGTATAGAAAATTCAGTGCATATTTGCTGTTTTGGACAATTCAACAATTTTGAATACAAGTAAACAA
>XM_034303269.1
atgaaaacataaaataacaagAAGACATAACATCAGGAAAAGCATACAGCCAATCCTTCACAATTCTCCGACCTAATCAAACGCCAAAAGCTTGATAAAATAAGTAGGTCTTCAagtcctttttaaaaatgtccatgcTTGACGAGGATTTTATAGATAACGGTAACACATTCCAGAGTGCAGGAGCTGCAACAGAAAAAGCGCGGTCTCCACTACTCCTCAACCGAGACCGTGGGACAGTTAGGAGCATAGTTTGAGAGGAACGCAGATGACGTTGAGATTGGTAAGAGATTAACATGTCCTTTATATACTCAGGAGCCTGATTGTGCAATGCTTTATTCAGGGATTCACTTATGCCTAGATAAAGtgcattacaataaaccaacTGTGTGGCAATAAAGGCATGCAAAACAGTCTCCAAGTCCTTGTTTGAAAGGATAGGTTTCAGTTTAGACAATTTtcttaactgaaaaaaagatgttttcacAACGCTGTTAACTTGACGATCAAAGCGGATTTCAAAATCGAAAATTACTCCAAGATTCTTCACATAACTATTATTGGACAACCGTCCATAACTTTCAATCAGGTCATTTCCGGGTAGTGTGTTCCCAAACATAATAAACTCAGTCTTATCCTCATttagttgtaaaaaaaattatttgctaGCCATCCCTTTACCTCAGTCAAACACTCATAAAAATTAGCAAAAGATGTACAGCCATCTCATTCCAAAGGAAAATACAGTTGTAGATCATCAGCATACAAGTGATAATTAATATTGTATTGCCTAAAAATTGACCCCAAGGGTAacatatataatgaaaataaagtcgAACTGAGAATTGATCCCTGAGGAACCCCCCAAGTGATAGTCGCAGATGACGAAACATAATTTCCAATTTTAACTGAGCATGTCCTGTCCTACAGATAGGAGGAAAACCACTTAAGGGCTACACCCTTAATCCCAACATAATCTCTAAGGCGTTCTATTAAAATCACATGATCTAAAGTATCGAAGGCTGCACTTAAATCTAACATCATTTAGGCAACACTTTTCCCAGAGTCAATacttaaaaaatatcatttgtaaCCTTTAATAATGTTGATTCTGTGCTGTGTTTGGTCCTAAATCCAGACTGAAAAATATCCATTATGTTGTTTCCAATCAAAAATTCAACAAGTTGATTATGGACAACTTTCTCTAAAATCTTATTCATAAAAGGCAATTTGGTAATAGGcctaaaatttttaaaatcctgtgaATCTAAGTTCATTTTCTTTAAGACTGgttcaataacagcatattctggatttaaataattatgtagCTGTTATTTATTCTATTCTGACGTTCTTTGGGATCTACTCACTGCAGTGCTGAACACGATTGTTTCTTCTGGAGGATCTTAACACTGTGTGGTTTAGTGTTGTGCCCATTCCTGCTCTTGAAGATTCACATTCCAGCAGAGATTCAAATCTAACAGAACTGAGTCTGACATTCCTCCTTCAAACTGGATTACAGTTAGAGCTACACTTTGCAGTAGTGTTGTTACAATACAGTAAATGAATGGGTGATTATCTAACCATTAACTTTTGCAAAAATGCAGAGTAAAATGGGTAtccatctttccttttttttttttcaactcatTTTGTTAAAGCACACTGCCTTTCCTCACAACCACTCTCTCTTTTAGCTTATAATGACCATGTGATAAATACCCACAATgtaagagattttttttggaagagtcattttcaaaaatatcttttcATTTGGATTGAGCTCTTTTAAATTGAACAATTTTCTGTTCTACAAAATcataaatttttaattcatcttcagtaaatgttttatccatgtcagggttatggtggatCCTAAGACTATCCTGGAAGCATTGGATGTAAGGaaagaatacaccctggacagaatacacacatacattcccCCACTTGTTCACACATATGGGCAAATTAGAGTCACCAGTCCATCAACTGGCATGCTATTGGGAggtgttaggaaaccagagagccTGGACACTATTAGTTCTTTAGTAGTTTTTCACGTCCAAGTGAATTAAAAGTTTGAAATTTTAGGGATTCAAAATCCAGATCATTTTACAACATGTGAACTCTTGACACACTGGGTACGACTAATAATCTGCTGAATCACTGTGACCAAGGCTATAAATACACCTTTGTGTAAGTTTTGTGGGAAAGACAAATCTATCAAACTGATAAATGAGCTGAAGTCACTCCTGACTAGCAACATACAATGCCATGTATGTATGCAATGGTTTGTGTTTTGCAGCCATGCAGCTCAACCCTGATCTgatcttttaataaataaatgctgtaagtCAAGCCATCAGAATGTATTGCATGGGcagatattatttttcttcactaAGCCActgtttatatacatattacatatattacatacagcATGCCTTATTTTTCCAACCCCCAGTGCTTGGCGTAAAAATCTGCTGTTGATGGGTGGAGTGCTCGGATATAAAGCATGGTGTTGCAGTGTTTATACAGCAGAGCACTTTAGAAGGAAAGTTTTCACTGCAGCAGAAACATGGTTAAAGCTAAGGTCTGGACACTTCGGAAGCATTTTGTTGGCTTTCCAAAGGAGAGTGACTTTGAGCTTAAAGAGGAGACATTACCTGAGCTTCAAAATGGAGAGGTCCAACTGGAGGCCATCTTCCTCAGCCTTGATCCATATATGAGAGCTGTGAGTTCAACTTTAATGAAAGAAGGTGATGTACAGATTGGAGCTCAGGTTGCAAAGGTACTTCAAAGCCGGAACCCAGCATTTCCTGTGGGCTGTTATGTGGTTGCTCCATGTGGATGGAGGACACACAGTGTGACCAATGGCAAAGCAATTTTTAGCCTTGAAATGACTCGAGTTCTTCCTGATTGGCCCCAAGACGTTCCTCTTTCCTTGGCTGTTGGTGCACTAGGGATGCCTGGTTTGACTGCCCTGTACGGCCTAGAGGAGATTCTGCAGGTGAAGCCAGGTGAAACTGTTCTGGTGAGTGCAGCAGCTGGTGCTGTGGGTACCATGGTGGGACAGATTTGTAAGATTAAAGGCTGTAAAGTGGTGGGTTCTGCTGGGAGTGAGGAAAAAGTGGCCTACCTGAAGGAGCTGGGCTTTGACTACGTTTTCAACTACAAGACCGTAACATCTCTGGATGAGGCACTGAAGCAAGCTTCACCTGAAGGCTATGACTGCTATTTTGAGAATGTTGGAGGTGCTTTCTTTACTGCAGCACTTAGTCAGATGAGGCCTCGAGGACGCATTGCTGTGTGTGGTGCAATATCGCTGTACAACGCCACCACACCTCAGATGTGTCCTTTTCCCCACATGACCATGCTGGCCAAGAGCATTAGGATGGAGGGATTCCAAGTCAGTCAGTGGCCAGAGAAAGATGTGGCATCTGTCAGAAGACTGCTTAAGTGGCTGAAGGAGGCAAGTTAAAACTGAGTGGGCCAAACTGACTGTAGTGTATTAACATAAGAGCTATGAGGGGAAACTTAAGGCCAAAGAAAATGTCACAGTGGGCTTTGAGAAGATGCCTGCTGCCTTCATCCAGATGCTGAGAGGGAC

Function

symbol description
ptgr1 Predicted to enable 15-oxoprostaglandin 13-oxidase activity. Predicted to be involved in prostaglandin metabolic process. Predicted to act upstream of or within fatty acid metabolic process. Predicted to be located in cytoplasm. Is expressed in digestive system; nervous system; and pectoral fin. Orthologous to human PTGR1 (prostaglandin reductase 1).

NR:

description
prostaglandin reductase 1

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K19825 DBR; 2-alkenal reductase (NADP+)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936788.2 True 3687 mRNA 0.39 8 10763576 10770209
XM_034303269.1 False 3625 mRNA 0.40 8 10763575 10770088

Neighbor

gene id symbol gene type direction distance location
ptgr1 ptgr1,LOC108267959,LOC107588162,LOC107753922,LOC107668743,LOC107691929,LOC107562349 coding upstream 3550 10754877 ~ 10760025 (+)
nat8l nat8l,LOC107691926,LOC107741469,LOC107562319,LOC107753918,LOC107588165 coding upstream 73923 10679257 ~ 10689652 (+)
faah2b LOC108267965 coding upstream 118824 10635705 ~ 10644751 (+)
pik3c3 pik3c3,LOC107691920,LOC107562280 coding upstream 168453 10574923 ~ 10595122 (+)
rgp1 rgp1,LOC107741481,LOC107668635,LOC107588171,LOC107691996 coding upstream 194091 10562232 ~ 10569484 (+)
txn NA coding downstream 1238 10771447 ~ 10775236 (+)
slc7a8a slc7a8a,LOC108267955,LOC107668787,LOC107753926,LOC108440039,LOC107742270,LOC107691931,LOC107562402 coding downstream 115297 10885506 ~ 10905558 (+)
gmpr2 gmpr2,LOC108267954,LOC108440043,LOC107753927 coding downstream 140707 10910916 ~ 10917550 (+)
LOC113539892 LOC108267929,LOC108261535 coding downstream 148294 10918503 ~ 10939471 (+)
LOC117596975 LOC108267982 coding downstream 173970 10944179 ~ 10962559 (+)
trnak-cuu_20 NA non-coding upstream 232047 10531456 ~ 10531528 (+)
trnan-guu_13 NA non-coding upstream 232531 10530971 ~ 10531044 (+)
LOC117596986 NA non-coding upstream 257098 10499275 ~ 10506477 (+)
G62131 NA non-coding upstream 266215 10497130 ~ 10497360 (+)
G61842 NA non-coding upstream 404611 10357814 ~ 10358964 (+)
LOC117596985 NA non-coding downstream 45541 10815750 ~ 10816552 (+)
G62373 NA non-coding downstream 94446 10864655 ~ 10864861 (+)
G62416 NA non-coding downstream 136816 10907025 ~ 10910142 (+)
LOC113540371 NA non-coding downstream 249924 11020133 ~ 11022796 (+)
G62549 NA non-coding downstream 406820 11177029 ~ 11193851 (+)
c4h4orf48 c7h4orf48 other upstream 100164 10657357 ~ 10663411 (+)
trnak-cuu_19 NA other upstream 268105 10495398 ~ 10495470 (+)
trnak-cuu_18 NA other upstream 271706 10491797 ~ 10491869 (+)
trnak-cuu_17 NA other upstream 272925 10490578 ~ 10490650 (+)
trnak-cuu_16 NA other upstream 274139 10489365 ~ 10489436 (+)
LOC117596972 LOC108267738,LOC108267932,LOC108267931,LOC108267739,LOC108267937,LOC108261673,LOC108267938,LOC108267933,LOC108267935,LOC108267740 other downstream 820506 11590715 ~ 11605230 (+)
si:ch211-200p22.4 LOC108267499,LOC108434851 other downstream 874692 11644901 ~ 11705336 (+)
si:dkey-112a7.4 LOC108268066 other downstream 1522282 12292491 ~ 12295133 (+)
tmem88b tmem88,bcl6b,LOC108267673 other downstream 2436448 13206657 ~ 13219859 (+)
slc16a13 slc16a13 other downstream 2505253 13275462 ~ 13285834 (+)

Expression


Co-expression Network