ptgr1 (ptgr1,LOC108267959,LOC107588162,LOC107753922,LOC107668743,LOC107691929,LOC107562349)


Basic Information

Item Value
gene id ptgr1
gene name ptgr1,LOC108267959,LOC107588162,LOC107753922,LOC107668743,LOC107691929,LOC107562349
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 10754877 ~ 10760025 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936790.2
CCCCTCAAACACAGAGCAGGGCTGTTTCACTGGCGAGGAGCTGCACGAACAGCTATAGCAGTTGCCTCAAGCAAAGGGCCATGGTCAAAGCCAAGACGTGGATCCTCAAGCAGCACTTTGAGGGTTTTCCTAAAGACCATGACTTTGAGCTGAAGCTGGAGCAGCTGCCTGAGCCCAAAGATGGAGAAGTACTTGTGGAAGCAGTGTTCCTAAGCGTGGATCCCTATATGCGgcCATTTAGTTGTGTACGAATGCACCCAGGAGATGTGATGATCGGAACTCAGGTGGCCAAAGTAATTCGGAGTAAAAACCCAGCTTTTCCTGAGGGCAGTCATGTGGTTGGTCGATGTGGATGGAGGACACACACGGTATCCGATGGAACCGGTTTCATCCGGATCCTGAGTGACTGGCCTCAGGATGTTCCTCTTTCTCTTGCACTTGGAGGCATCGGCATGCCAGGCCTGACTGCTCTATATGGTTTAGAAGAGGTGTTGGCCATCAAACCGGGAGAGACGCTCCTGGTGAACGCGGCGGCTGGGGCTGTGGGGAGCGTCGTGGGTCAGATCGCTAAACTGAAAGGCTGTAAGGTGGTGGGTTCAGCTGGGAGTGATGCTAAAGTGGCCTATCTGAAAGAGCTGGGTTTCGACTATGCCTTCAACTACAAAACTGTGCCATCTCTGGAGGAAGCTCTAAAACAGGCCTCACCAGAGGGATATGAGTGCTACTTTGAGAATGTTGGTGGACATTTCTCCAGTGTTGCTCTCTCACAGATGAAGCAGTTTGGGAGGATTGCTGTTTGTGGAGGAATTTCCCTTTACAACGATAAAGAACCTCAAACAGgtcCTTATCCACACCTGCCTATGATCTTTAAGGAGCTGCGGATGGAGGGCTTCCTGGTGGGGAGATGGGAGCATAAGAATGAGGAGTCTCTGAGAAGGCTGTTGACTTGGCTACAGGAGgGAAAGCTGAAGTGTAGAGAGCATGTGACTGTTGGTTTTGAGAACATGCCAGCTGCCTTCATGGGGATGCTGCAGGGAGAAAACATCGGGAAAGCCATCGTTAAAGTCTGAAGGTTTTTTTCCAGCTCAGTATTGCCAAACTGTCAAACAGTCCCCTGCAACACATTTAATAAAGCCTTTTTGTAGAGGA
>XM_026936791.2
CCTCAAACACAGAGCAGGGCTGTTTCACTGGCGAGGAGCTGCACGAACAGCTATAGCAGGTACACTGCAAGTAAACGAGACAACGTACCTAACCAGCGTATGAGTATTGCCTCAAGCAAAGGGCCATGGTCAAAGCCAAGACGTGGATCCTCAAGCAGCACTTTGAGGGTTTTCCTAAAGACCATGACTTTGAGCTGAAGCTGGAGCAGCTGCCTGAGCCCAAAGATGGAGAAGTACTTGTGGAAGCAGTGTTCCTAAGCGTGGATCCCTATATGCGgcCATTTAGTTGTGTACGAATGCACCCAGGAGATGTGATGATCGGAACTCAGGTGGCCAAAGTAATTCGGAGTAAAAACCCAGCTTTTCCTGAGGGCAGTCATGTGGTTGGTCGATGTGGATGGAGGACACACACGGTATCCGATGGAACCGGTTTCATCCGGATCCTGAGTGACTGGCCTCAGGATGTTCCTCTTTCTCTTGCACTTGGAGGCATCGGCATGCCAGGCCTGACTGCTCTATATGGTTTAGAAGAGGTGTTGGCCATCAAACCGGGAGAGACGCTCCTGGTGAACGCGGCGGCTGGGGCTGTGGGGAGCGTCGTGGGTCAGATCGCTAAACTGAAAGGCTGTAAGGTGGTGGGTTCAGCTGGGAGTGATGCTAAAGTGGCCTATCTGAAAGAGCTGGGTTTCGACTATGCCTTCAACTACAAAACTGTGCCATCTCTGGAGGAAGCTCTAAAACAGGCCTCACCAGAGGGATATGAGTGCTACTTTGAGAATGTTGGTGGACATTTCTCCAGTGTTGCTCTCTCACAGATGAAGCAGTTTGGGAGGATTGCTGTTTGTGGAGGAATTTCCCTTTACAACGATAAAGAACCTCAAACAGgtcCTTATCCACACCTGCCTATGATCTTTAAGGAGCTGCGGATGGAGGGCTTCCTGGTGGGGAGATGGGAGCATAAGAATGAGGAGTCTCTGAGAAGGCTGTTGACTTGGCTACAGGAGgGAAAGCTGAAGTGTAGAGAGCATGTGACTGTTGGTTTTGAGAACATGCCAGCTGCCTTCATGGGGATGCTGCAGGGAGAAAACATCGGGAAAGCCATCGTTAAAGTCTGAAGGTTTTTTTCCAGCTCAGTATTGCCAAACTGTCAAACAGTCCCCTGCAACACATTTAATAAAGCCTTTTTGTAGAGGA

Function

symbol description
ptgr1 Predicted to enable 15-oxoprostaglandin 13-oxidase activity. Predicted to be involved in prostaglandin metabolic process. Predicted to act upstream of or within fatty acid metabolic process. Predicted to be located in cytoplasm. Is expressed in digestive system; nervous system; and pectoral fin. Orthologous to human PTGR1 (prostaglandin reductase 1).

NR:

description
PREDICTED: LOW QUALITY PROTEIN: prostaglandin reductase 1-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K13948 PTGR1, LTB4DH; prostaglandin reductase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936790.2 False 1149 mRNA 0.50 9 10754877 10760025
XM_026936791.2 True 1194 mRNA 0.50 9 10754879 10760025

Neighbor

gene id symbol gene type direction distance location
nat8l nat8l,LOC107691926,LOC107741469,LOC107562319,LOC107753918,LOC107588165 coding upstream 65225 10679257 ~ 10689652 (+)
faah2b LOC108267965 coding upstream 110126 10635705 ~ 10644751 (+)
pik3c3 pik3c3,LOC107691920,LOC107562280 coding upstream 159755 10574923 ~ 10595122 (+)
rgp1 rgp1,LOC107741481,LOC107668635,LOC107588171,LOC107691996 coding upstream 185393 10562232 ~ 10569484 (+)
trnak-cuu_21 NA coding upstream 189153 10565653 ~ 10565724 (+)
si:dkey-11k2.7 ptgr1,LOC108440055 coding downstream 3550 10763575 ~ 10770209 (+)
txn NA coding downstream 11422 10771447 ~ 10775236 (+)
slc7a8a slc7a8a,LOC108267955,LOC107668787,LOC107753926,LOC108440039,LOC107742270,LOC107691931,LOC107562402 coding downstream 125481 10885506 ~ 10905558 (+)
gmpr2 gmpr2,LOC108267954,LOC108440043,LOC107753927 coding downstream 150891 10910916 ~ 10917550 (+)
LOC113539892 LOC108267929,LOC108261535 coding downstream 158478 10918503 ~ 10939471 (+)
trnak-cuu_20 NA non-coding upstream 223349 10531456 ~ 10531528 (+)
trnan-guu_13 NA non-coding upstream 223833 10530971 ~ 10531044 (+)
LOC117596986 NA non-coding upstream 248400 10499275 ~ 10506477 (+)
G62131 NA non-coding upstream 257517 10497130 ~ 10497360 (+)
G61842 NA non-coding upstream 395913 10357814 ~ 10358964 (+)
LOC117596985 NA non-coding downstream 55725 10815750 ~ 10816552 (+)
G62373 NA non-coding downstream 104630 10864655 ~ 10864861 (+)
G62416 NA non-coding downstream 147000 10907025 ~ 10910142 (+)
LOC113540371 NA non-coding downstream 260108 11020133 ~ 11022796 (+)
G62549 NA non-coding downstream 417004 11177029 ~ 11193851 (+)
c4h4orf48 c7h4orf48 other upstream 91466 10657357 ~ 10663411 (+)
trnak-cuu_19 NA other upstream 259407 10495398 ~ 10495470 (+)
trnak-cuu_18 NA other upstream 263008 10491797 ~ 10491869 (+)
trnak-cuu_17 NA other upstream 264227 10490578 ~ 10490650 (+)
trnak-cuu_16 NA other upstream 265441 10489365 ~ 10489436 (+)
LOC117596972 LOC108267738,LOC108267932,LOC108267931,LOC108267739,LOC108267937,LOC108261673,LOC108267938,LOC108267933,LOC108267935,LOC108267740 other downstream 830690 11590715 ~ 11605230 (+)
si:ch211-200p22.4 LOC108267499,LOC108434851 other downstream 884876 11644901 ~ 11705336 (+)
si:dkey-112a7.4 LOC108268066 other downstream 1532466 12292491 ~ 12295133 (+)
tmem88b tmem88,bcl6b,LOC108267673 other downstream 2446632 13206657 ~ 13219859 (+)
slc16a13 slc16a13 other downstream 2515437 13275462 ~ 13285834 (+)

Expression


Co-expression Network