trmt10b (trmt10b)


Basic Information

Item Value
gene id trmt10b
gene name trmt10b
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 10046572 ~ 10053214 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936792.2
CGCGCGACAAAGCTACGCAACAGCAGAGTGTTATCATGTGCGCGAGGAGAAGGATGCAGCTTATTTGAAACGAGTCGTGCTAACTGATGCATCTTGGAAATGAGTGAAACTGTGGAAATAGTTGAGAAACAGAAGTCAAGCTTTGAAGACCGACTTCTAAATGATGAATCTGTGTCTGGCATGATGGAGTTTCTCAGCATTGATGTGGATCTGAGCTCCAGCGCATCAAACAGAGAGGAAACATTATGCTCTATTGCACAGAAGAATGTGATGCGAAAACAGCGGAACTGGGAGAGGAGATTGGAGGcaaaaaagagcaagaggaaagaggaaaaacagagaagGAAACAGAACCAACAAGATAAAGATGTTGTGTCTCAGTTTAGTAAACGTGTGACCAAGGCTATCACAAGAGAGCGTCTGGAGGAGGCGAGAGCAGCTGGACCAAGACTGTGTGTGGATCTGAGCATGAGCGACTGCATGTCACACAAAGAAATCAGTCGTCTCGCCAGTCAAATAAGACGTCTCTATGGGTCCAATAAGAAAGCCATGCAGCCGTTTCACCTCTTCCTCACAGACATGAAAGAAGACAGTCTGCTTTATAAAGAATGCATCAGAATGAACGAAGGCTTTCTTAACTACTTGATTGATATCACTGCGGAGAGTTGGATTGATCTCTTTCCTTGTGAggatgtaatttatttaactcCAGATGCGAGTGAAGCTTTAGAGGAAGTAAATGGAGACAAGGTCTACATTCTTGGAGGCCTGGTAGATGAGAGCATTCAAAAGAAACGGAGCTACACCAGGGCAAAAGAGCTCAGCGTGCAGATGGCGAGGCTGCCCATTGATGAGTACATGATGAAAAGACCAAACCCCAAGAATTTTCACTCAAAAATCCTAGCCATCAACCAAGtATTTGAAATCCTGCTGACTTATCGTGACACTGGAAGCTGGAGCAAAGCCCTCAGTGCTGGAGTTCCCACAGGAAAGGGATACATCGTGTCTTCTGAAGTAGAGTTGGATTTACCATTATGACCAATAACACGTATACCAGCACAACAACCTCAGGATGCCaatttaaacagaaatctcaCAGGCCTTCGAGAGAGAATTGAGAAGTGATTCTGCACTGATCTGGCTGTtttgaaaaatgtgaatttaaaatattacataatgcTCAGCACTAACCAAGTGTAAAAGCACTGACCAGATTAAGATATTAACACAGTTGTGACTGCTGTTCTTCTGTGAACCCTGTTGTCACTAAGCATGACATCCTTCGGTTTTTGAATTTCTGTCttaaacaatcattttaattatcatAAATGATGGAATAAACTTAGACAATTACTCAATTCAGATGCTATTAGTTTGCTCTTAGAACTGCAGCTTTTCCCCAGGATATAATCTATTTTAATGATTGTTTAATTTATAGTATTTATCTAAAACACACtaatctttccatttttttcagctaTTCATAATGATTTCATGGTAAATGCATTTTCCATATCAGTATgttgttttttggtttcttgCACTGAATCTTTATagccatatttatttataggtaGCCAGTTAGCAAATTACTGTAATGTCTGGAAAGCTGGACAGAAACCATTCCTATTCATGGCCACTAGATGGCGCGCTATACAACTATGTGACTCAGCAGTTTCTTTCCATCACTTATGTTGTCTTACAATATGCAGCAGGCAGAGattaacagaataaaatacatttatagtttt
>XM_034303270.1
CGCGCGACAAAGCTACGCAACAGCAGAGTGTTATCATGTGCGCGAGGAGAAGGATGCAGCTTATTTGAAACGAGTCGTGCTAACTGATGCATCTTGGAAATGAGTGAAACTGTGGAAATAGTTGAGAAACAGAAGTCAAGCTTTGAAGACCGACTTCTAAATGATGAATCTGTGTCTGGCATGATGGAGTTTCTCAGCATTGATGTGGATCTGAGCTCCAGCGCATCAAACAGAGAGGAAACATTATGCTCTATTGCACAGAAGAATGTGATGCGAAAACAGCGGAACTGGGAGAGGAGATTGGAGGcaaaaaagagcaagaggaaagaggaaaaacagagaagGAAACAGAACCAACAAGATAAAGATGTTGTGTCTCAGTTTAGTAAACGTGTGACCAAGGCTATCACAAGAGAGCGTCTGGAGGAGGCGAGAGCAGCTGGACCAAGACTGTGTGTGGATCTGAGCATGAGCGACTGCATGTCACACAAAGAAATCAGTCGTCTCGCCAGTCAAATAAGACGTCTCTATGGGTCCAATAAGAAAGCCATGCAGCCGTTTCACCTCTTCCTCACAGACATGAAAGAAGACAGTCTGCTTTATAAAGAATGCATCAGAATGAACGAAGGCTTTCTTAACTACTTGATTGATATCACTGCGGAGAGTTGGATTGATCTCTTTCCTTGTGAggatgtaatttatttaactcCAGATGCGAGTGAAGCTTTAGAGGAAGTAAATGGAGACAAGGTCTACATTCTTGGAGGCCTGGTAGATGAGAGCATTCAAAAGAAACGGAGCTACACCAGGGCAAAAGAGCTCAGCGTGCAGATGGCGAGGCTGCCCATTGATGAGTACATGATGAAAAGACCAAACCCCAAGAATTTTCACTCAAAAATCCTAGCCATCAACCAAGtATTTGAAATCCTGCTGACTTATCGTGACACTGGAAGCTGGAGCAAAGCCCTCAGTGCTGGAGTTCCCACAGGAAAGGGATACATCGTGTCTTCTGAAGTAGAGTTGGATTTACCATTATGACCAATAACACGTATACCAGCACAACAACCTCAGGATGCCaatttaaacagaaatctcaCAGGCCTTCGAGAGAGAATTGAGAAGTGATTCTGCACTGATCtgcTCAGCACTAACCAAGTGTAAAAGCACTGACCAGATTAAGATATTAACACAGTTGTGACTGCTGTTCTTCTGTGAACCCTGTTGTCACTAAGCATGACATCCTTCGGTTTTTGAATTTCTGTCttaaacaatcattttaattatcatAAATGATGGAATAAACTTAGACAATTACTCAATTCAGATGCTATTAGTTTGCTCTTAGAACTGCAGCTTTTCCCCAGGATATAATCTATTTTAATGATTGTTTAATTTATAGTATTTATCTAAAACACACtaatctttccatttttttcagctaTTCATAATGATTTCATGGTAAATGCATTTTCCATATCAGTATgttgttttttggtttcttgCACTGAATCTTTATagccatatttatttataggtaGCCAGTTAGCAAATTACTGTAATGTCTGGAAAGCTGGACAGAAACCATTCCTATTCATGGCCACTAGATGGCGCGCTATACAACTATGTGACTCAGCAGTTTCTTTCCATCACTTATGTTGTCTTACAATATGCAGCAGGCAGAGattaacagaataaaatacatttatagtttt
>XM_034303271.1
CGCGCGACAAAGCTACGCAACAGCAGAGTGTTATCATGTGCGCGAGGAGAAGGATGCAGCTTATTTGAAACGAGTCGTGCTAACTGATGCATCTTGGAAATGAGTGAAACTGTGGAAATAGTTGAGAAACAGAAGTCAAGCTTTGAAGACCGACTTCTAAATGATGAATCTGTGTCTGGCATGATGGAGTTTCTCAGCATTGATGTGGATCTGAGCTCCAGCGCATCAAACAGAGAGGAAACATTATGCTCTAAGAATGTGATGCGAAAACAGCGGAACTGGGAGAGGAGATTGGAGGcaaaaaagagcaagaggaaagaggaaaaacagagaagGAAACAGAACCAACAAGATAAAGATGTTGTGTCTCAGTTTAGTAAACGTGTGACCAAGGCTATCACAAGAGAGCGTCTGGAGGAGGCGAGAGCAGCTGGACCAAGACTGTGTGTGGATCTGAGCATGAGCGACTGCATGTCACACAAAGAAATCAGTCGTCTCGCCAGTCAAATAAGACGTCTCTATGGGTCCAATAAGAAAGCCATGCAGCCGTTTCACCTCTTCCTCACAGACATGAAAGAAGACAGTCTGCTTTATAAAGAATGCATCAGAATGAACGAAGGCTTTCTTAACTACTTGATTGATATCACTGCGGAGAGTTGGATTGATCTCTTTCCTTGTGAggatgtaatttatttaactcCAGATGCGAGTGAAGCTTTAGAGGAAGTAAATGGAGACAAGGTCTACATTCTTGGAGGCCTGGTAGATGAGAGCATTCAAAAGAAACGGAGCTACACCAGGGCAAAAGAGCTCAGCGTGCAGATGGCGAGGCTGCCCATTGATGAGTACATGATGAAAAGACCAAACCCCAAGAATTTTCACTCAAAAATCCTAGCCATCAACCAAGtATTTGAAATCCTGCTGACTTATCGTGACACTGGAAGCTGGAGCAAAGCCCTCAGTGCTGGAGTTCCCACAGGAAAGGGATACATCGTGTCTTCTGAAGTAGAGTTGGATTTACCATTATGACCAATAACACGTATACCAGCACAACAACCTCAGGATGCCaatttaaacagaaatctcaCAGGCCTTCGAGAGAGAATTGAGAAGTGATTCTGCACTGATCtgcTCAGCACTAACCAAGTGTAAAAGCACTGACCAGATTAAGATATTAACACAGTTGTGACTGCTGTTCTTCTGTGAACCCTGTTGTCACTAAGCATGACATCCTTCGGTTTTTGAATTTCTGTCttaaacaatcattttaattatcatAAATGATGGAATAAACTTAGACAATTACTCAATTCAGATGCTATTAGTTTGCTCTTAGAACTGCAGCTTTTCCCCAGGATATAATCTATTTTAATGATTGTTTAATTTATAGTATTTATCTAAAACACACtaatctttccatttttttcagctaTTCATAATGATTTCATGGTAAATGCATTTTCCATATCAGTATgttgttttttggtttcttgCACTGAATCTTTATagccatatttatttataggtaGCCAGTTAGCAAATTACTGTAATGTCTGGAAAGCTGGACAGAAACCATTCCTATTCATGGCCACTAGATGGCGCGCTATACAACTATGTGACTCAGCAGTTTCTTTCCATCACTTATGTTGTCTTACAATATGCAGCAGGCAGAGattaacagaataaaatacatttatagtttt

Function

symbol description
trmt10b Predicted to enable tRNA (guanine-N1-)-methyltransferase activity and tRNA binding activity. Predicted to be involved in mitochondrial tRNA processing. Predicted to act upstream of or within methylation. Predicted to be active in nucleoplasm. Orthologous to human TRMT10B (tRNA methyltransferase 10B).

NR:

description
PREDICTED: tRNA methyltransferase 10 homolog B isoform X1

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0008168 methyltransferase activity molecular_function

KEGG:

id description
K15445 TRMT10, TRM10, RG9MTD; tRNA (guanine9-N1)-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936792.2 True 1751 mRNA 0.40 9 10046572 10053214
XM_034303270.1 False 1712 mRNA 0.41 10 10046572 10053214
XM_034303271.1 False 1703 mRNA 0.41 10 10046572 10053214

Neighbor

gene id symbol gene type direction distance location
intu intu coding downstream 22795 9997315 ~ 10023777 (-)
aadat aadat,LOC102781018 coding downstream 53705 9980997 ~ 9992867 (-)
mfap3l mfap3l coding downstream 65906 9972383 ~ 9980666 (-)
pfdn2 pfdn2,LOC107745204 coding downstream 126781 9914234 ~ 9919791 (-)
b4gat1 b4gat1,LOC107747893,LOC107745213,LOC107692823,LOC107696735 coding downstream 134800 9907559 ~ 9911772 (-)
LOC113540363 NA coding upstream 40533 10093747 ~ 10095116 (-)
LOC113540311 LOC108267981 coding upstream 42565 10095779 ~ 10106529 (-)
LOC117597105 LOC108267929 coding upstream 57948 10111162 ~ 10143429 (-)
LOC113538503 LOC108261535 coding upstream 114703 10167917 ~ 10189928 (-)
LOC113547269 NA coding upstream 178460 10231674 ~ 10236612 (-)
LOC113540700 NA non-coding downstream 4793 10041567 ~ 10041779 (-)
LOC117597227 NA non-coding downstream 5878 10040482 ~ 10040694 (-)
LOC113540709 NA non-coding downstream 6985 10039380 ~ 10039587 (-)
LOC113540720 NA non-coding downstream 7806 10038554 ~ 10038766 (-)
LOC117596979 NA non-coding downstream 8589 10026874 ~ 10037983 (-)
LOC113540369 LOC108267738,LOC108267937,LOC108267740,LOC108267931,LOC108267932,LOC108267929 non-coding upstream 149017 10202231 ~ 10211232 (-)
G62108 LOC108267978,LOC108411458 non-coding upstream 310798 10364012 ~ 10364892 (-)
G62109 LOC108267978 non-coding upstream 315107 10368321 ~ 10370563 (-)
G62125 NA non-coding upstream 421556 10474770 ~ 10483928 (-)
LOC117596989 NA non-coding upstream 444307 10497521 ~ 10499087 (-)
G61900 NA other downstream 4806 9605727 ~ 10041766 (-)
G61972 actn3,LOC106577856,LOC106608893 other downstream 241254 9776278 ~ 9805318 (-)
LOC113526752 LOC100862731,LOC108267340,LOC108267722,LOC108267272,LOC108267273,LOC108261494,LOC108267212,LOC108261855,LOC100379168 other downstream 517747 8639468 ~ 9528825 (-)
cxcl19 LOC108267987 other upstream 17192 10070406 ~ 10073229 (-)
LOC113540372 NA other upstream 25474 10078688 ~ 10080237 (-)
trnan-guu_9 NA other upstream 433454 10486668 ~ 10486741 (-)
trnan-guu_10 NA other upstream 437134 10490348 ~ 10490421 (-)
trnan-guu_11 NA other upstream 438376 10491590 ~ 10491663 (-)

Expression


Co-expression Network