vax2 (vax2,LOC107697471)


Basic Information

Item Value
gene id vax2
gene name vax2,LOC107697471
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 10430289 ~ 10448477 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936795.2
AGGAACATTTTAAGttatttcagaaattattttattcgGCTAATATTCGTTGCAATTATAATTAAGAGCAAAAAGTTATCTAgtctaatataaaaatattctcCTCACTGTCGCTCATTCAGCTGAAATCTTTTCCCACATCGAAGAGGCTGTGCTGAGACCAAATTCATCACTGCTGAGAGAGGTGAACAGGGTAAATTAACTGGAGCACAGACGACATCCACGGGCAAAAAGgtgaaagtttgtgtgtgttttgtggaatTTACCACCGCTGTCTGCACTTCGTCTTTTCACTATACTCTTCCGTGGTTAAGCAGCGAAGCACCTCCCAGTGGCTCTGTCACAGACCTAGCCAACTCTctgcatatatacacaccagGCTATGCACTTTTTAGGGGGCTGAAAGCTGCCCTATAACTGAGGGTCCTTTGGTGTGTCCGTAGGGCTTCCTCCGCCTCATGACCCTCATTCCTCATGACCCACACTTAACTCCATGAAGGCTGGCCTACACTGAACATGCCGAACGGATCCAGTAGGACCTGTCTTTCCCtgtctggaatctgattggatGTGTTTCGGGGACGGATTCCCCCATTTTAGACCAAGTAGTGAAGGAGAGCGAAAGTCGAGATTACTGATCGCACGCTGAAGTAACAGGATTCGGCGGACAAATAAGCTTGAATAAGACTACTGCACCTCTGTTACATGTTTGACCAAGGCAAGAGTATGGGCGATGGAGTCGCCGAGGACCGAAACCACTGTGGACTCAATTCGCTGCGTCGCGAGCGCGGTGGAGACGCTAAAACTCTGGCGGAAGTGGAAAGCCGCAGTTCCGGCGACGCTCCTGCGGGGACATCTGCGTCCACCACGAGCTCCTCCAGCGAGGACGGACACGACAAACTGTTAGGAGTGGACCCTGATTACTGCCGCAGGATTTTAGTCCGAGATGCTAAAGGCACTATTCGTGAGATCGTTTTGCCGAAAGGCCTGGACTTGGACCGGCCGAAGCGCACGCGCACCTCCTTCACGGCCGAGCAGCTTTACCGGCTCGAGCTTGAGTTCCAGCGCTGTCAGTACGTGGTGGGGCGCGAGCGCACGGAGCTCGCCCGCCAGCTGAACCTCTCCGAAACTCAGGTGAAAGTCTGGTTTCAGAACCGACGTACCAAGCAGAAGAAGGATCAGTCCAAGGACTCAGACAAGCGATCGTCATCCACCTCCGAGTCACTGGCCACATGTAACATCCTGCGTCTGCTTGAGCAGGGGCGCTTGCTGTCAGTGCCTGCACCTCCTCCCAACCCACTGCTGGCACCACCACATGCGGCCAATGGTTCGCTCCTTGGAGGTCCATCTgtgtcctcctcctctcctggGGTAAGCAGTACGGGCACTCCTCCAGCGATTGTGGCCAGCGGTGGTGGAACGTTTGGCCTATCTTTGTCCTCACTCGGTGCTACGCCGCCCTCACCAAGGCTTGGGGTAGCACCCCCATCCCTTTTCTCCATTCCACTGATGAGTGGTGCTCATCATGAACTCACGTCTAGCTATGGGTGTGGATCATCAGCTTTTGAGCCCTATACAAGGACAGAGAGGAAAGATGGGGACTTGGGTGGGAAGAAGACAGTTTCCTAAAGACTTGAATCACATTCTGGACCACTAAGGAATGCCCCAGGTTTACCAAAGGGTGCGATCTGCTCTCTTTTTCAGCTAAGGTGAAGGAGGAAGGAGTTGAttttcaaaattaaacaaatatggAGAGCTTTCACCTCCATTTTAGATTCTTTCCACTCCTAAATTGCCAAGCCGTGCTGATCCTTACTGCCACACTAAGATAATGAAAAAAAGGCTGCAGCCTCTGCTTTCCAGGAAGAGTGAGCTCAATTTAATTTACCACCTCTGCATTCTGTGTTTAAGTGGCATCTTGTTTACAGATgctcattgttttgtttcatttctgaattctctcctgtgtgtgtgtgtgtgtacattacaGACAGCCTCAGGCTTAGTCTTTGTCTGTAATATAAAAGATTCAACATTGCTAATGTAATTGTGAAAGGCAAATACTGCTTTATAACAGATATTGTATCCAAATGGgtgttaaaaatgacaaaatgaatgATCATATCACTATGGTGGACCTTGTGGTACTCTTTATGCTGCTCTTAACTGGTATTGTAATTAGGGGTGAGTTTATcatcaatgtttattttacttgtTAATTGGATGTGCATGTAAGGGTGGGTttgtgagaaacacacacaataataatgccAAATTGTTGTGCTTTCTAATATGCGTAGTTCTTTTCCcagttttgtatattttaaaaatagtgctTCACTCAAGCATATATTAGTAAATATtagctgcttattattattgataattCAATAATGTAAGAAATGGGGAAAATGGGAAATTATGAATTAGGTGTCATATTCTGTATGTATGTTCACAGCATGGGGAAGCAGTTCAAGTTCAATCAAGatcaatattaaaattattgcACCATGAACACAAATGATTGTGTAGCATCTTAGATACTGCAAGGATAACTGTCTCATCAGTGTTATTTCCCAATGTTCTAGTTAGCAACTTGTTTCCAAATGTAGGCAACTCTAGGGGCTCCTTAGGACTTCTGATTGTTAATCAGGCTGCAAGTTATATGTCTTAGTTGTCCATTATTGTGTAATGTGCAGTGATAATTTATTATCTGAACGTACATAGGatctaaatcattttatttacatatgcaCACAGCCTCAAACAATATCTGTTTATAAACAAAGCACATGGAAAGCATGGTAGcagtgtttattcattcatttgtagTAAAATCTGATGGGTCAAAATGCAACTCTTAATTGTCTGTTCAGTCTCTTCAGTTCTCCTAAATCGGTGAAAGTCTAAGGCTAAGATTAGCCATGGTTTTGTTGTATCTCCACTACATATTGTGAAACTGCTTTCTTAGATGTTTACACCATTTTGATTGGTTTCTGAACCTGGAGCTTGCATCGTGACTCTGATTGTTATAGTGACTGATAAAGCAGTGGAATAGACCTCAGGAAGAGTCATCAAACTGTTTGCCATTTATTCCATATTCTTTAAGGTTTTAATGCCTTAGGTAGCACCTCATTCATTGCCGTGAAATCTAAgcactttattttcatatatgttTACTTCTTAACATTTTTCTGTGCACTCTTGGCTAAAATGAAGTAGTATCCAGACATTTTCAGTGTTAGTTGTCACATGTATCTCTTATATTGTGTGGCTGGAAAGCCAGAGCTTTCACTGAGGTTAAGACATCAGAAATCTTTGAGTGTCAGAAACAGGCAATGTCTCATTGGGCTGCAGGCTCAGAACATATACAGCTGGCAAAAATcaatctttttctgttttttctcaaaAGCTCATGGTCACACTATTGCAACCATGAGCCATAGAAACTGTCATGGCCAGAGTAGCCTATTtctttattgttgctgttgattcaaacactgactctgTGTTGGTTGACCTTTTATCTTTACTGGATTTCCCTTTTAAATGCTATAATTTGTTTAGGGTTCTAAGATGAGAGCTCTTAGTCTGAGACCCTTTGACCCTTTGACCCTAAATGAGGTAAAGCTATTGAGGCTATTGCCTTTTTTGCAACTGTTATCCTGTGTGCACCATATGAGTTTCCATACTGTTGTGAAACAGTGTTATTTTCAATAATCAGTATTAATAATTTACTGACTcccatgttaaatatttaacgCAATTTTGAAGTTTAGTTTAGCACTGCagtttccccccttttttttttgatttcacataaaatttttattaaatctgtgttaggatttttttaatgcctaTCACAAACAGGTAGCGAATTTGTACTGCTGTTTTTTCTGCTTGGCTTACAACTCTCTGACAGAGGAGTTTAGAGGCTTGGAGATTATGTTTACCAAAATTGTCTTActgaatttaatatttttaccaAGCAAAGGATTGTCTATTTGACACTCAGATACCCCAACATATTGCATTTTAAGCAGAAAATTAATTGTATAGTAATCAGTTTCCTATGTTTGTATTGTCATGTATTTGTTGTGAGTaagtgtatgtggaagagagagGAGCATTATGAGCTTGAAACAAAGTGAGACTAGTGGTAAAGTGCTAAATTCCTCACCTAACCCTCCTATAACCATCTACTTATTCCTTTTAAACCTtgaatatatttctttaaaacaagAATACACTGTGAAATGTATGGTATAGTCGAAGAACAAAGTAATGGGGTACAAGAGAGGCTTATATATAACTTTTCACACTAGTTTGATTGTAATGTAAACTCTTTCTGGTTTTATGTTTGAGATACGAGATTGTGTGAATCAGTGTTCTTGTTCTTACACAAGCCATAAACCATTTCTTGACAGTAATTCTTTCTGTAATCATGTTGAAACATAAATGGCACCAacttttttcaaacaaatttgaaaaaaatgttaacacaaaCCATATGTAAATATACCATATGAGTCTT

Function

symbol description
vax2 Enables sequence-specific DNA binding activity. Acts upstream of or within several processes, including camera-type eye morphogenesis; negative regulation of intrinsic apoptotic signaling pathway by p53 class mediator; and regulation of retinal ganglion cell axon guidance. Predicted to be active in nucleus. Is expressed in diencephalon; forebrain neural rod; head; and immature eye. Orthologous to human VAX2 (ventral anterior homeobox 2).

NR:

description
PREDICTED: ventral anterior homeobox 2

GO:

id name namespace
GO:0061386 closure of optic fissure biological_process
GO:0090259 regulation of retinal ganglion cell axon guidance biological_process
GO:0021554 optic nerve development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0030900 forebrain development biological_process
GO:0060042 retina morphogenesis in camera-type eye biological_process
GO:1902254 negative regulation of intrinsic apoptotic signaling pathway by p53 class mediator biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936795.2 True 4537 mRNA 0.41 3 10430289 10448477

Neighbor

gene id symbol gene type direction distance location
shtn2 LOC108267975 coding downstream 13724 10406112 ~ 10416565 (-)
tex261 tex261,LOC107755640 coding downstream 25373 10398553 ~ 10404916 (-)
f13a1b LOC108267979,LOC108411459 coding downstream 70886 10346280 ~ 10359403 (-)
LOC113540334 LOC108267980 coding downstream 86158 10333469 ~ 10344131 (-)
LOC117596978 LOC108267983,LOC108267929 coding downstream 110089 10308651 ~ 10320200 (-)
c4h20orf27 c7h20orf27,cunh20orf27,si:ch211-74f19.2,LOC107755635 coding upstream 11742 10460219 ~ 10474141 (-)
trnan-guu NA coding upstream 25919 10474396 ~ 10474470 (-)
trnan-guu_1 NA coding upstream 27146 10475623 ~ 10475696 (-)
trnan-guu_2 NA coding upstream 28381 10476858 ~ 10476930 (-)
trnan-guu_3 NA coding upstream 30822 10479299 ~ 10479372 (-)
G62109 LOC108267978 non-coding downstream 59726 10368321 ~ 10370563 (-)
G62108 LOC108267978,LOC108411458 non-coding downstream 65397 10364012 ~ 10364892 (-)
LOC113540369 LOC108267738,LOC108267937,LOC108267740,LOC108267931,LOC108267932,LOC108267929 non-coding downstream 219057 10202231 ~ 10211232 (-)
LOC113540700 NA non-coding downstream 388510 10041567 ~ 10041779 (-)
LOC117597227 NA non-coding downstream 389595 10040482 ~ 10040694 (-)
G62125 NA non-coding upstream 26293 10474770 ~ 10483928 (-)
LOC117596989 NA non-coding upstream 49044 10497521 ~ 10499087 (-)
G62167 NA non-coding upstream 85596 10534073 ~ 10534422 (-)
G62183 NA non-coding upstream 123678 10572155 ~ 10572360 (-)
G62469 LOC108267929 non-coding upstream 478363 10926840 ~ 10953744 (-)
LOC113540372 NA other downstream 350052 10078688 ~ 10080237 (-)
cxcl19 LOC108267987 other downstream 357060 10070406 ~ 10073229 (-)
G61900 NA other downstream 388523 9605727 ~ 10041766 (-)
G61972 actn3,LOC106577856,LOC106608893 other downstream 624971 9776278 ~ 9805318 (-)
G61537 NA other downstream 1091544 9337826 ~ 9338745 (-)
trnan-guu_9 NA other upstream 38191 10486668 ~ 10486741 (-)
trnan-guu_10 NA other upstream 41871 10490348 ~ 10490421 (-)
trnan-guu_11 NA other upstream 43113 10491590 ~ 10491663 (-)
trnan-guu_12 NA other upstream 46688 10495165 ~ 10495238 (-)
gba2 gba2,LOC107749818,LOC107741462 other upstream 89768 10538245 ~ 10562006 (-)

Expression


Co-expression Network