nat8l (nat8l,LOC107691926,LOC107741469,LOC107562319,LOC107753918,LOC107588165)


Basic Information

Item Value
gene id nat8l
gene name nat8l,LOC107691926,LOC107741469,LOC107562319,LOC107753918,LOC107588165
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 10679257 ~ 10689652 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936800.2
ATCCCGCTATAAAGAACGCGTGAGCTACGCCGGCATCTCTTTGGTCGTGAGAGAGCTCAGGGTTTGCTACACcgcatttgtcttttttttattttcttccacaTAAAAAAGCGCACCCATCATCCATTATTATttcgttttttttaaatttctcccCGATTTCAGTTTATCCGAGGCCACTTGCATGCATTGTTCGTCTCCTAAAATGGTTTGCGAGACTAAAATAGTTGCTGACGACCCCGACGCCATAGCTGGGAACAAAAAAGATTCTCTGATCGTTTCCTCTTCGCAGATGTGGACGTCGGCTTCCGACGCGTTTGAGCGGAAAGACGCGAAACGGGAGCAGGTTTTAATCCGCGACTTCGAGCGCGGTGATAACGCAGAGGTGCGCCGCATCTTCAATGAAGGCATCATGGAGCGGATACCCAACACGGCCTTCCGCGGTCTTAAACACCAACCACACACTCAGTTTATTTACGCTGTGCTCACAGTAATGTGCTTTGTTATGACCAAGTCCGTCATGCTGACATGCTGCACACCTTTCATTCTATTGGGAGCACGCTATTACTATAGCAGAAAAGTCATCCTCAGCTACTTGGACTGCGCACTCCACACAGATATGGCTGATATAGAGGCATACTACATGAAGCCCACAGGTTCCTGTTTCTGGGTGGCAGTGCTAAACGGTCAGGTGGTGGGCATTGTCGCAGCACAGGGACGAGAAGAAGACAACACAGTAGAACTGCGGCGCATGTCTGTGGACTCTCGTTTCCGTGGGAAGGGCATTGCCAAGGCGCTGGGACGACGGGTCCTAGAGTTTGCTATGCTTAACAACTACTCAGCCGTGGTTCTGGGGACGACAGCAGTCAAGATGGCCGCCCACAAGCTCTACGAATCATTGGGTTTTCAAAAGGTGGGCGAGACTGAGAACTACACTCTGCCCGGAATGAGCCGCTCACTGATGGAAAGGCTCTTCTTCCAGATCCGCTACAGCCGCTACCGGCTACAGCTCCACgaagagtgagagtgtgtgagagtgaacgAAAGCATGAGAGAACGAGTGGACGTAAGAAAGCGTGTGAGAGTATGAACACCGACCACAATCCTTAAATCACCTAAACCCAATCCACCTCTTaaaccttattattatttttttaaaatcacagatgTTATTTCTACCACTATTTCTATTAATTCCTTAcctgttatgtttttttcttctttaacattttactttaatcatttctttcattatttttttaaaaactgaatctcccaattagtttatttatactaatatatataaaaagtaatgATAAAACCCGTGTTAACAAGAGTAAAATGCCACACAACAAACCAAGGCAATAGGTCGGTCTTAGATTctctttttaaatctgttgtaAGGGCTGATCTGATAGCTAGCACTGACTTTTCTCAAAGATGGCAGAATGATTAGAGGGGTGTACAGAGGAAAGGAGAATGGATACAGTTAAGATTCTCTTTCCAATGTCACACTACTCTGTTAAGTGTACACAAATGCAGGTCTTGAACTTCATAAAATGGAAAGGCTGGTGACTCTAGCAGTCAAGCAAACAATATTGACTAAAGCACAGCAAGTTTTTCTATGTCTTAAGaacaagaagagaaataaacagtgaAGTTAGCACTAAGTGAAGTAACTCCTAGTTAATCCTGCACAGTTTAACCCTGAGTTAACTCAAAAGTGGTGATTTTACTGTAAGGGAGGAGTCCTACTCTACATATATATAGTAACTGAAATTTTGCCTCTAACTCTTCCTGTCCCCCCCAATTACAGGCCAGTCTCTCAATCTTTCCTTTTGTGTTGCTGGAACAGATCAGATATTGCACAGATTGTATTGCTGTATAAGATCTTTATTGTGTTATGTCTTAATATTACTAAAATACCTACTTATATAAATTGGAATTAATTGGACCTAGATTAACAAGATATTAATTTGCAGTCAGTGAAATTTGATTTgacattaacacaaaaaaagaactcattacaaattcataattttcattaaaacattacCAAGTTTAAACAATGCAAATTAATACTAATGCAGTATTAATAAATGTGATGCACATCTATTATCGCTGCATTGGATGAAGCTTGGTTGGTCAGACATAAATCTGAGCACAAATTTGGCTTTGACAAATTGACTGCGCAATTATTCAATATATAAacctttatattttacataaatatggAATATGTAAATGTGAAACATTTGAATACATATCTGACAGATATAACTGAAAATCTCTCACCATATCCATTCTCCTATGAAAGTACCAGCAATGGGAGAGATACAAGCCACAACGAGCCTCATTTGTGAAATATTCTTGTATAAAGTTAAGAAactaaatgtgattaaaactaAGTAATGtagcgcaaaaaaaaaaaaaaaaaaaaacttgatccTTGCCAATTTTCCTTGACTTGACTTTTACCCATCCATGAAACTGACTGCAGCCCTGGGCCAGACCCTTCCACACCCTAACCCCACTCATTCAGCCCCGACCCCATCTCTGCATGCGCCACTGAGCCTTGTTGCGCTGCTTCTATCTCCATTTGAGCTTGTACGACTCCTAAAAACTCCTCTGTGATGTTATAGTAGCAGCGCAAAACATTTGGTCAATTAACTCAAAGATGATGGACTGATAACGAAAAAGTTGTGTATGACATAAGAGATGTACCTACCGACTCGCTGCTTCGATGACATCACAGCTGCCAAAAGTAGAATGCAAAAGCAATGCAAATATGTGGCATGCCTCTGTACCTGGTTCGTACGTACGGTGCCTGCCCTGGAAATGATGtaactctgtttaaaaaaatatgtagaacaagCTTCTTTTTTAGCTGAACATATAACAATGTGTGTCTTTGTTAAAAGAAACTACTGTTTTGCATGAAACATGACTTTGAATGAAAAGTGTTTAAGAAAACATGATCTATCAAATTGA

Function

symbol description
nat8l Predicted to enable aspartate N-acetyltransferase activity. Predicted to be located in mitochondrion and rough endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in mitochondrial membrane. Is expressed in immature eye; nervous system; neural plate; optic primordium; and trigeminal placode. Orthologous to human NAT8L (N-acetyltransferase 8 like).

NR:

description
PREDICTED: N-acetylaspartate synthetase

GO:

id name namespace
GO:0030867 rough endoplasmic reticulum membrane cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0017188 aspartate N-acetyltransferase activity molecular_function

KEGG:

id description
K18309 NAT8L; aspartate N-acetyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936800.2 True 2991 mRNA 0.40 3 10679257 10689652

Neighbor

gene id symbol gene type direction distance location
faah2b LOC108267965 coding upstream 34506 10635705 ~ 10644751 (+)
pik3c3 pik3c3,LOC107691920,LOC107562280 coding upstream 84135 10574923 ~ 10595122 (+)
rgp1 rgp1,LOC107741481,LOC107668635,LOC107588171,LOC107691996 coding upstream 109773 10562232 ~ 10569484 (+)
trnak-cuu_21 NA coding upstream 113533 10565653 ~ 10565724 (+)
trnak-cuu_12 NA coding upstream 194740 10484444 ~ 10484517 (+)
ptgr1 ptgr1,LOC108267959,LOC107588162,LOC107753922,LOC107668743,LOC107691929,LOC107562349 coding downstream 65225 10754877 ~ 10760025 (+)
si:dkey-11k2.7 ptgr1,LOC108440055 coding downstream 73923 10763575 ~ 10770209 (+)
txn NA coding downstream 81795 10771447 ~ 10775236 (+)
slc7a8a slc7a8a,LOC108267955,LOC107668787,LOC107753926,LOC108440039,LOC107742270,LOC107691931,LOC107562402 coding downstream 195854 10885506 ~ 10905558 (+)
gmpr2 gmpr2,LOC108267954,LOC108440043,LOC107753927 coding downstream 221264 10910916 ~ 10917550 (+)
trnak-cuu_20 NA non-coding upstream 147729 10531456 ~ 10531528 (+)
trnan-guu_13 NA non-coding upstream 148213 10530971 ~ 10531044 (+)
LOC117596986 NA non-coding upstream 172780 10499275 ~ 10506477 (+)
G62131 NA non-coding upstream 181897 10497130 ~ 10497360 (+)
G61842 NA non-coding upstream 320293 10357814 ~ 10358964 (+)
LOC117596985 NA non-coding downstream 126098 10815750 ~ 10816552 (+)
G62373 NA non-coding downstream 175003 10864655 ~ 10864861 (+)
G62416 NA non-coding downstream 217373 10907025 ~ 10910142 (+)
LOC113540371 NA non-coding downstream 330481 11020133 ~ 11022796 (+)
G62549 NA non-coding downstream 487377 11177029 ~ 11193851 (+)
c4h4orf48 c7h4orf48 other upstream 15846 10657357 ~ 10663411 (+)
trnak-cuu_19 NA other upstream 183787 10495398 ~ 10495470 (+)
trnak-cuu_18 NA other upstream 187388 10491797 ~ 10491869 (+)
trnak-cuu_17 NA other upstream 188607 10490578 ~ 10490650 (+)
trnak-cuu_16 NA other upstream 189821 10489365 ~ 10489436 (+)
LOC117596972 LOC108267738,LOC108267932,LOC108267931,LOC108267739,LOC108267937,LOC108261673,LOC108267938,LOC108267933,LOC108267935,LOC108267740 other downstream 901063 11590715 ~ 11605230 (+)
si:ch211-200p22.4 LOC108267499,LOC108434851 other downstream 955249 11644901 ~ 11705336 (+)
si:dkey-112a7.4 LOC108268066 other downstream 1602839 12292491 ~ 12295133 (+)
tmem88b tmem88,bcl6b,LOC108267673 other downstream 2517005 13206657 ~ 13219859 (+)
slc16a13 slc16a13 other downstream 2585810 13275462 ~ 13285834 (+)

Expression


Co-expression Network