cideb (cideb,LOC108440045)


Basic Information

Item Value
gene id cideb
gene name cideb,LOC108440045
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 11255938 ~ 11258662 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936804.2
CCACAGAGATAGAGCAGGCCTAAGGACAGGTCAGCTAGCACACACCAGCTCTTCCCTATCAGAAAGAAAAGTTTAATCTAAGGACtaaattttatgtgtatatatatatatatatatatatataaagggaAAATAACACTGGAGTGCTGAACTCTTCAAGATGGAAACAACATCCTCACTGATTAAGTCTGTGTCTCGGCGTGTATGGTCAGCACCTCAGAGGCCTTTTAGAGTTTGCTTGTGGAACAGAGAGATCAGGAAGGGGCTCACTGCATCGACCTTAAAGGAGCTGAAAGACAGGgcAGCCCACACTCTGCTCATTTCTACCCTGCTGTCTCTGGTGTGTGAGGAAGATGGCACTGAAGTGGACTCAGATGAGTTTCTCATGGCCCTGCCAGACAACACAGTGCTCATGGCCTTGGAGCCAGGACAGACCTGGAGACCAcatcctTTAGGCCAGAGAGGCAGCAGCATCAAACCAGCTGACAACAAACCCCGCACTGGTCGTGACATCGCTCgagtgacctttgacctttatcGTCTGAACCCTAAGGATATTTTTGGCTCTCTAAGTGTGAAGGCCACATTCCAGGGTCTGTACTCGGTCAGCGCTGACTTCCAATGCCTGGGGCCGAAGAAGGTGCTCAGAGAGGCCCTCAGAATGATCTCCACCATACTCCATGCAGCAGGTCACATGTTAATCACGTCTGCCACCGTGATTCGCCGAATCATACAGGGAGCGGACTTCCTGCAAGCTCACGGTGCTCGTGAGATTCAGACAGAATACTGGAACTGACTTGCTGTGtgatcaggaaaaaaagaaaaaaacgtcTCTTGCTTTGTGAAATGCAAttcatattaacaattattacagtgttctttgttttctgttgttctCTCATGGCCATTCAGCCATGACAATACAGAATGCATTATTAACGGGAAACAGGAACAGGTTTATTTAATCAGTGTGCAGATCTGTGAAATGGGACTATGTAAACGCAAataatttaaattgtatttatatgATTGTAGATGTATGTAAATGATGGCTGCACAATATTCTGCGGTgttaatcattattataatattggTCTGTGTGATACTGATATCAAAAAGGCCTGCAATATGTAAATGAGTTCTCTAAcaaactgtatgttttttttattggtgttttgggttaataaaaaaatatttctcgGTCA

Function

symbol description
cideb Predicted to be involved in regulation of apoptotic process. Predicted to act upstream of or within apoptotic process. Orthologous to human CIDEB (cell death inducing DFFA like effector b).

NR:

description
PREDICTED: LOW QUALITY PROTEIN: cell death activator CIDE-B-like

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process
GO:0005811 lipid droplet cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936804.2 True 1205 mRNA 0.43 5 11255938 11258662

Neighbor

gene id symbol gene type direction distance location
dhrs4 dhrs4,dhrs1,LOC103023174,LOC107753983,LOC108440044,LOC107742330,LOC107563424 coding upstream 11361 11240674 ~ 11244577 (+)
ajuba ajuba coding upstream 63944 11183735 ~ 11191994 (+)
mmp14a mmp14,mmp14a,LOC107691938,LOC107753930 coding upstream 84598 11159921 ~ 11171340 (+)
LOC113540324 NA coding upstream 118512 11130175 ~ 11137426 (+)
LOC113539896 LOC108261535 coding upstream 144844 11090981 ~ 11111094 (+)
si:dkey-183c6.8 LOC108267925,LOC108434846 coding downstream 124772 11383434 ~ 11400606 (+)
LOC113539902 LOC108267738,LOC108267739,LOC108267932,LOC108267740,LOC108267931,LOC108261673,LOC108267937,LOC108267938 coding downstream 181426 11440088 ~ 11445185 (+)
LOC117596977 LOC108267738,LOC108267937,LOC108267739,LOC108267932,LOC108267931,LOC108261673 coding downstream 195268 11453930 ~ 11462747 (+)
LOC117596971 LOC108267738,LOC108267739,LOC108267931,LOC108267932,LOC108267740,LOC108267937,LOC108267938,LOC108261673 coding downstream 209288 11467950 ~ 11582422 (+)
vbp1 vbp1,LOC107588140,LOC107668907,LOC107562614,LOC107742288,LOC107691952 coding downstream 355106 11613768 ~ 11619677 (+)
G62554 NA non-coding upstream 40195 11215155 ~ 11215743 (+)
G62549 NA non-coding upstream 62087 11177029 ~ 11193851 (+)
LOC117596983 NA non-coding upstream 72204 11182770 ~ 11183734 (+)
LOC113540371 NA non-coding upstream 233142 11020133 ~ 11022796 (+)
G62416 NA non-coding upstream 345796 10907025 ~ 10910142 (+)
G62572 LOC108261673,LOC108267931,LOC108267740,LOC108267738,LOC108267932,LOC108267935,LOC108267938 non-coding downstream 16777 11275439 ~ 11366783 (+)
G62585 LOC108267738,LOC108267739,LOC108267932,LOC108267937,LOC108267938,LOC108267241,LOC108267941 non-coding downstream 61435 11320097 ~ 11360515 (+)
LOC117596981 NA non-coding downstream 63808 11322470 ~ 11325752 (+)
LOC113540368 NA non-coding downstream 159345 11418007 ~ 11421178 (+)
G62618 NA non-coding downstream 178867 11437529 ~ 11437855 (+)
c4h4orf48 c7h4orf48 other upstream 592527 10657357 ~ 10663411 (+)
trnak-cuu_19 NA other upstream 760468 10495398 ~ 10495470 (+)
trnak-cuu_18 NA other upstream 764069 10491797 ~ 10491869 (+)
trnak-cuu_17 NA other upstream 765288 10490578 ~ 10490650 (+)
trnak-cuu_16 NA other upstream 766502 10489365 ~ 10489436 (+)
LOC117596972 LOC108267738,LOC108267932,LOC108267931,LOC108267739,LOC108267937,LOC108261673,LOC108267938,LOC108267933,LOC108267935,LOC108267740 other downstream 332053 11590715 ~ 11605230 (+)
si:ch211-200p22.4 LOC108267499,LOC108434851 other downstream 386239 11644901 ~ 11705336 (+)
si:dkey-112a7.4 LOC108268066 other downstream 1033829 12292491 ~ 12295133 (+)
tmem88b tmem88,bcl6b,LOC108267673 other downstream 1947995 13206657 ~ 13219859 (+)
slc16a13 slc16a13 other downstream 2016800 13275462 ~ 13285834 (+)

Expression


Co-expression Network