tex261 (tex261,LOC107755640)


Basic Information

Item Value
gene id tex261
gene name tex261,LOC107755640
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 10398553 ~ 10404916 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936805.2
TCTCCACTGCACTGTCGCTTTTCttcctcacctctctctctgaAGACTGAGGAAACGCTGCCTGAACTTTGCCCGCTGCAGTTTTTAGCATATTGCCAAGTCGGgctgttttgtttacattttttttggtatttatttgaagtgttttattaaaaaaaaaagatgtggtttatttatttacttagcTGGGTCTCCTTGTTAATACAGGTGTCCTTTGTTACCCTCGCTATTGCTGCAGGTCTATACTACCTGGCAGAGTTGATAGAGGAGTACACAGTTGCCACCAGTcgaataataaaatacatgataatgATCTCCACAGCTGTACTGACAGGACTGTACCTGTTTGAGGGCTTCCCCATGCTCATGATTGGAGTCGGCCTCTTCACTAACCTGGTGTACTTTGGACTGCTGCAAACATTCCCTTACATTATGCTCAGCTCACCAAACTTCATCCTGTCATGTAtactgGTGGTGATAAATCACTATATGGCCTTCCAGTACTTTGCAGAGGAGTACTATGCCTTTTCGGAGGTTCTAGCATACTTCACAATTTGCCTGTGGGTGATACCATTTGCTTTCTTTGTATCCCTGTCTGCTGGGGAGAATGTTCTTCCATCTACAATGCAGCAAGGAGATGATGTGGTGTCAAACTACTTTACCAAAGGGAAGAGGGGCAAACGCTCCGGGATCCTCCTGATATTCTCCTTCCTGAAAGAGGCTGTTTTGCCAAGCCGGCAGAAAATGTACTGAAGCACTACATTTAAGGGGTAGAGGACAGATGGAGGGCTTGGGAAGGGGTGAGAGATGGGTTATGGTCAGGGTTTCCAGGTGTCCTAGTGAACTGGGTTCATGGGATGAAGGGAGAGGGGGATGTTTAAGGGGCTGAAAGGTAGAAGAACTAAAGAGAGAACCTGTGTGGAGTACCTTGTCTGGAAGGATGCACACAGCCTGCCACGGACATGCAAGCTCCTCAACTGAACTaacatgtctgtctctctgtctgtccatctgttttaaatgaagtgaGCACAGCCAATTAACGCTCCATAAGTGACCCTCAGCCATGGAATGTCTCTTGTTTCCTTGACAGGCATTATTAAGGCTGATTTGGAACTGAAATTACAGGGAGTGACAATTGTCAATTTTGATGTAGatctttgtttaatttgtgtctggaattttgtccaaaaagtctttcatttttaaaggctTGAATCATAGACATGTGACGCAGTGTCTTTAGCTGGATGATTGATGGTGTGAGCTTCTTTGCATAATTTGATGACAGCAATACTGTCAGTAGTTGACGCTGAAGATTCCCATATAATTGTCATACTACAGCCATCGAGGCATTTGGtcctgctttttattatttgtatgctgtaaagaACAAAATAGTTTGCCTAAACAGTTCTGAGTTAAGCACAGTTGAGATTACCTGTAAGATGTAATAGTGTATAAAAGATCTCAAAATAAGTGCATCAACAGATTCTTAAATTTATTATGGAGAAGCCAAAAAATGCTTAGTACATATAAGTGGAGTGTGTTAGTCTCATTACATTCTTTATAATGTTCAAAAGCATTAACactgcttgtctttttttttttttttaaccaagtgAATTTGACCACAGTGGTCTTTCTTCAGATGTTTTTCACACATGCAGTTAATAAAATGGCAGTTAAATTTGATTTTCA

Function

symbol description
tex261 Predicted to enable COPII receptor activity. Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in COPII-coated ER to Golgi transport vesicle. Predicted to be integral component of Golgi membrane and integral component of endoplasmic reticulum membrane. Orthologous to human TEX261 (testis expressed 261).

NR:

description
protein TEX261

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936805.2 True 1701 mRNA 0.41 6 10398553 10404916

Neighbor

gene id symbol gene type direction distance location
f13a1b LOC108267979,LOC108411459 coding downstream 39150 10346280 ~ 10359403 (-)
LOC113540334 LOC108267980 coding downstream 54422 10333469 ~ 10344131 (-)
LOC117596978 LOC108267983,LOC108267929 coding downstream 78353 10308651 ~ 10320200 (-)
LOC113547269 NA coding downstream 161941 10231674 ~ 10236612 (-)
LOC113538503 LOC108261535 coding downstream 208625 10167917 ~ 10189928 (-)
shtn2 LOC108267975 coding upstream 1196 10406112 ~ 10416565 (-)
vax2 vax2,LOC107697471 coding upstream 25373 10430289 ~ 10448477 (-)
c4h20orf27 c7h20orf27,cunh20orf27,si:ch211-74f19.2,LOC107755635 coding upstream 55303 10460219 ~ 10474141 (-)
trnan-guu NA coding upstream 69480 10474396 ~ 10474470 (-)
trnan-guu_1 NA coding upstream 70707 10475623 ~ 10475696 (-)
G62109 LOC108267978 non-coding downstream 27990 10368321 ~ 10370563 (-)
G62108 LOC108267978,LOC108411458 non-coding downstream 33661 10364012 ~ 10364892 (-)
LOC113540369 LOC108267738,LOC108267937,LOC108267740,LOC108267931,LOC108267932,LOC108267929 non-coding downstream 187321 10202231 ~ 10211232 (-)
LOC113540700 NA non-coding downstream 356774 10041567 ~ 10041779 (-)
LOC117597227 NA non-coding downstream 357859 10040482 ~ 10040694 (-)
G62125 NA non-coding upstream 69854 10474770 ~ 10483928 (-)
LOC117596989 NA non-coding upstream 92605 10497521 ~ 10499087 (-)
G62167 NA non-coding upstream 129157 10534073 ~ 10534422 (-)
G62183 NA non-coding upstream 167239 10572155 ~ 10572360 (-)
G62469 LOC108267929 non-coding upstream 521924 10926840 ~ 10953744 (-)
LOC113540372 NA other downstream 318316 10078688 ~ 10080237 (-)
cxcl19 LOC108267987 other downstream 325324 10070406 ~ 10073229 (-)
G61900 NA other downstream 356787 9605727 ~ 10041766 (-)
G61972 actn3,LOC106577856,LOC106608893 other downstream 593235 9776278 ~ 9805318 (-)
G61537 NA other downstream 1059808 9337826 ~ 9338745 (-)
trnan-guu_9 NA other upstream 81752 10486668 ~ 10486741 (-)
trnan-guu_10 NA other upstream 85432 10490348 ~ 10490421 (-)
trnan-guu_11 NA other upstream 86674 10491590 ~ 10491663 (-)
trnan-guu_12 NA other upstream 90249 10495165 ~ 10495238 (-)
gba2 gba2,LOC107749818,LOC107741462 other upstream 133329 10538245 ~ 10562006 (-)

Expression


Co-expression Network