vbp1 (vbp1,LOC107588140,LOC107668907,LOC107562614,LOC107742288,LOC107691952)


Basic Information

Item Value
gene id vbp1
gene name vbp1,LOC107588140,LOC107668907,LOC107562614,LOC107742288,LOC107691952
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 11613768 ~ 11619677 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936806.2
CTCGCGCGCCGCTGAGACGGTCAAACATACGTAAAGAGGAAGCGCTCTGGCTCTTTCCAAAATGGCGGCCACCATAGAGAACAGCAGTGCTGGAGCTGCgaataagaaaaaacatttaggAATTCCTGAAGCAGTGTTTGTAGAGGATGTGGATTCGTTTATGAAGCAGCCCGGCAATGACACGGCAGATGTCGTGCTGAGGAAGCTTGACGAACAGTACCAGAAGTATAAATACATGGAACTCAACCtggttcagaaaaaaatgagGTTGAAAAACCAGATTCCACAAATCAAGCAGACATTAGAAATCTTACGGCACATGCAGAAGAAAAAGGACACTACAGATCCGATGGAGACACATTTCCTATTGGCTGATAATGTGTACTGCAAGGCCTCCGTCCCGCCCACGGATAAAGTGTGTTTGTGGCTTGGGGCCAACGTAATGTTGGAGTATGATATAGATGAAGCTCAGACACTGCTGGAGAAGAATCTCGGCACGGCTTCTCGAAACCTGGAGTCTCTAGAGGAGGACCTGGACTTCCTCCGAGACCAGTTCACAACCACTGAAGTCAATATGGCGCGTGTGTACAACTGGGATGTCAAGAGGAGGAGCAAAGACAACCTTCTTAAATCAGCTGAGAGGTCTTAGAGGAGATGTAACGCTTCCCTGTCAAAGAAACACCCCAGTCAGTTTTCCTCCACACTGTTATCTATTGATTTTGTtacttttaaagtattttttcaaGTAAAAAGGAAATGGAAACGAAACAGAAGTCATaatgcagttttctttttttttattataatcagtagttgtttgctttattttacCTGGTTATTTTCATTCTATACTTACCGACTTAAGTCTGGTGTTCGTGACACTGAGTTCAACTGTTTCCTGTTAATGGGAGAAATATACTCCTTTTGAATAAGTCAGAGTGAGGAGACACTGGATAAAAGGGGTGGATTGTTCTAAAGGGgaaaagtgtgtttaataaaccctTTCAGGGGAAATGTGTGTTCACTGGTTAACCTTCCCATCTGTCCTGACTCCTTCCACTtgctcatgtctctctctctccttctcttgaCTCCATAGCCCTTACCTCTGCTGAAACCTGTGCTTTTTCCTCTCCCTTTTTTACCTCTTTTCAcctgtatttatttgttaaattgtATCCATTAAAACTGAATGAGCAACTCACAATGAAGCTTTAGGGAAAGACACAAAGTGAA

Function

symbol description
vbp1 Predicted to enable tubulin binding activity. Predicted to be involved in microtubule-based process and tubulin complex assembly. Predicted to act upstream of or within protein folding. Predicted to be part of polysome and prefoldin complex. Predicted to be active in cytoplasm. Is expressed in alar plate midbrain region; immature eye; myotome; neural plate; and optic tectum. Orthologous to human VBP1 (VHL binding protein 1).

NR:

description
prefoldin subunit 3-like isoform X1

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0016272 prefoldin complex cellular_component
GO:0051082 unfolded protein binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936806.2 True 1236 mRNA 0.43 6 11613768 11619677

Neighbor

gene id symbol gene type direction distance location
LOC117596971 LOC108267738,LOC108267739,LOC108267931,LOC108267932,LOC108267740,LOC108267937,LOC108267938,LOC108261673 coding upstream 31346 11467950 ~ 11582422 (+)
LOC117596977 LOC108267738,LOC108267937,LOC108267739,LOC108267932,LOC108267931,LOC108261673 coding upstream 151021 11453930 ~ 11462747 (+)
LOC113539902 LOC108267738,LOC108267739,LOC108267932,LOC108267740,LOC108267931,LOC108261673,LOC108267937,LOC108267938 coding upstream 168583 11440088 ~ 11445185 (+)
si:dkey-183c6.8 LOC108267925,LOC108434846 coding upstream 213162 11383434 ~ 11400606 (+)
cideb cideb,LOC108440045 coding upstream 355106 11255938 ~ 11258662 (+)
zgc:162171 LOC108267158 coding downstream 12299 11631976 ~ 11637570 (+)
zgc:92429 zgc:92429,LOC108267498,LOC103044742,LOC108434854 coding downstream 87782 11707459 ~ 11716739 (+)
gpr185b gpr185b,LOC108267436,LOC107669001,LOC107562838,LOC107588216,LOC107742332,LOC107691958 coding downstream 199089 11818766 ~ 11824148 (+)
si:dkey-171c9.3 LOC108268329 coding downstream 466502 12086179 ~ 12093053 (+)
tnfsf10l LOC108268320,LOC108410411,LOC103041464,LOC107691962,LOC107562848,LOC107742295,LOC107753950 coding downstream 480128 12099805 ~ 12122603 (+)
G62640 NA non-coding upstream 2711 11610836 ~ 11611057 (+)
G62639 NA non-coding upstream 4499 11608756 ~ 11609269 (+)
LOC117596988 NA non-coding upstream 149162 11463083 ~ 11464606 (+)
G62618 NA non-coding upstream 175913 11437529 ~ 11437855 (+)
LOC113540368 NA non-coding upstream 192590 11418007 ~ 11421178 (+)
G62654 NA non-coding downstream 55636 11675313 ~ 11675695 (+)
G62932 NA non-coding downstream 242956 11862633 ~ 11863683 (+)
G62967 NA non-coding downstream 293173 11912850 ~ 11913106 (+)
G62983 NA non-coding downstream 315152 11934829 ~ 11937759 (+)
G63061 NA non-coding downstream 384313 12003990 ~ 12004223 (+)
LOC117596972 LOC108267738,LOC108267932,LOC108267931,LOC108267739,LOC108267937,LOC108261673,LOC108267938,LOC108267933,LOC108267935,LOC108267740 other upstream 8538 11590715 ~ 11605230 (+)
c4h4orf48 c7h4orf48 other upstream 950357 10657357 ~ 10663411 (+)
trnak-cuu_19 NA other upstream 1118298 10495398 ~ 10495470 (+)
trnak-cuu_18 NA other upstream 1121899 10491797 ~ 10491869 (+)
trnak-cuu_17 NA other upstream 1123118 10490578 ~ 10490650 (+)
si:ch211-200p22.4 LOC108267499,LOC108434851 other downstream 25224 11644901 ~ 11705336 (+)
si:dkey-112a7.4 LOC108268066 other downstream 672814 12292491 ~ 12295133 (+)
tmem88b tmem88,bcl6b,LOC108267673 other downstream 1586980 13206657 ~ 13219859 (+)
slc16a13 slc16a13 other downstream 1655785 13275462 ~ 13285834 (+)
G63903 NA other downstream 1798700 13418377 ~ 13418696 (+)

Expression


Co-expression Network