c4h20orf27 (c7h20orf27,cunh20orf27,si:ch211-74f19.2,LOC107755635)


Basic Information

Item Value
gene id c4h20orf27
gene name c7h20orf27,cunh20orf27,si:ch211-74f19.2,LOC107755635
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 10460219 ~ 10474141 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936807.2
CCATGCAGAAGGCGGGATTTTTACTGCTACCCATAGCGAAAATgcaacattttcctttttctcgGGTCGAGTTTACGTTCTGTTAGTCAACAGCAGTGGTCATTTCCGTCTTCAGAAATCACGATTGAAGGGTTATTGTTGGTACATCATCATGACGCTGTGACTGATTCTCTGTcttaacaaacacaaatatggcaACTGCCAAAAAAGGTTCCTCTAAGGCGGGGGGCATTCGCTTTGCTGAAGcaaatgctgctgctgctgctcactCCCATGTGCACTTTGATGAGAAGCTGCACGACTCTGTTGTCATGGTGATTCCTGAGTCTGATGGGAACTTCTTGGTTAAGGTGGGCTTCCTGAAGATTCAACACAGGTATGAAATTGTCTTCACGCTGCCAGAGGTTCCAGGGCTTGGGGATGATGTTTGTCCGGCTCCTGTGCCCAACCCTTACCTTCAGATTAAAGATCTTACTGCAGCCCCTAGCGGAGGTTTAAAGGTGATGTGTGAGTATGTGGCTCACAAGGAGGGTGTGCTGTGTGAGGAGATGCTAATACTCAGTGAAAGCAAAGAGGATGTGTGCCTGAAGGTGAAAGTTCACGCTCGTGTTATGGatCGACATCATGGGACACCTATGTTATTAGAAGGGGTACGATGTGTTGGAGCAGAGCTTGAGTATGACTCAGAGCAAAGTGATTGGCAAGGATTTGACTAATTGGTGACCTGTTCCTCTCAGATATTCTCACTGATAGTGTAAATGttggaataaacacacacacacacacacacacacacacacacacacacacacacactgtatatttacagtactgtgcaaaagtcttaggcaccctgttTAGTAAAaattttgttaatgtttatagATGTTTTATGAGTTCTGCATTACTGaatcagtacaaaaatattttatatttccaaacattacttttccaacaaaaaaattaaatgttatagaagAATGTTTGTATaccagtaaagaaagcaacatattacgtaacagaccacttttcagacaaaaaatataatgaGGACTGCTgtctgtggcagattctccaagatgctcagtaaaacttaccagccaatttccttataaaactgcgcAAAATGTACAATGAGATTactgatgcttttttttctaaagtaaatggttatcacaccaaatattgtctttttttttagtttattactgtttactgctctttatagaatTGTTTTGttaagaaatgtttaatttcatcatttctgaAAGCATATTTGCTTTACAGCAGTTTTTTGCATATACCTAATACTTTAGTACAgtactgtctctgtgtgtgtgtgtgtgtatatatatatat
>XM_026936808.2
TACTGCTACCCATAGCGAAAATgcaacattttcctttttctcgGGTCGAGTTTACGTTCTGTTAGTCAACAGCAGTGGTCATTTCCGTCTTCAGAAATCACGATTGAAGGCGTGCAGTTGCAGTTGTGTTCCAAAGACAAAATCAGCCATGTTTTTGAGTTCTCCTTCCTGCACGTTCTTATTCATCAGCAGGGTTATTGTTGGTACATCATCATGACGCTGTGACTGATTCTCTGTcttaacaaacacaaatatggcaACTGCCAAAAAAGGTTCCTCTAAGGCGGGGGGCATTCGCTTTGCTGAAGcaaatgctgctgctgctgctcactCCCATGTGCACTTTGATGAGAAGCTGCACGACTCTGTTGTCATGGTGATTCCTGAGTCTGATGGGAACTTCTTGGTTAAGGTGGGCTTCCTGAAGATTCAACACAGGTATGAAATTGTCTTCACGCTGCCAGAGGTTCCAGGGCTTGGGGATGATGTTTGTCCGGCTCCTGTGCCCAACCCTTACCTTCAGATTAAAGATCTTACTGCAGCCCCTAGCGGAGGTTTAAAGGTGATGTGTGAGTATGTGGCTCACAAGGAGGGTGTGCTGTGTGAGGAGATGCTAATACTCAGTGAAAGCAAAGAGGATGTGTGCCTGAAGGTGAAAGTTCACGCTCGTGTTATGGatCGACATCATGGGACACCTATGTTATTAGAAGGGGTACGATGTGTTGGAGCAGAGCTTGAGTATGACTCAGAGCAAAGTGATTGGCAAGGATTTGACTAATTGGTGACCTGTTCCTCTCAGATATTCTCACTGATAGTGTAAATGttggaataaacacacacacacacacacacacacacacacacacacacacacacactgtatatttacagtactgtgcaaaagtcttaggcaccctgttTAGTAAAaattttgttaatgtttatagATGTTTTATGAGTTCTGCATTACTGaatcagtacaaaaatattttatatttccaaacattacttttccaacaaaaaaattaaatgttatagaagAATGTTTGTATaccagtaaagaaagcaacatattacgtaacagaccacttttcagacaaaaaatataatgaGGACTGCTgtctgtggcagattctccaagatgctcagtaaaacttaccagccaatttccttataaaactgcgcAAAATGTACAATGAGATTactgatgcttttttttctaaagtaaatggttatcacaccaaatattgtctttttttttagtttattactgtttactgctctttatagaatTGTTTTGttaagaaatgtttaatttcatcatttctgaAAGCATATTTGCTTTACAGCAGTTTTTTGCATATACCTAATACTTTAGTACAgtactgtctctgtgtgtgtgtgtgtgtatatatatatat
>XM_026936809.2
TCGGTGTCTAAAATCTTTCCGACTTGTTGTAGATAACGTTACAGAAACATACTATCCGCTGCGGGCTAATTTTCATACAACTGTGTCTACCTAAACACAGGCGTGCAGTTGCAGTTGTGTTCCAAAGACAAAATCAGCCATGTTTTTGAGTTCTCCTTCCTGCACGTTCTTATTCATCAGCAGGGTTATTGTTGGTACATCATCATGACGCTGTGACTGATTCTCTGTcttaacaaacacaaatatggcaACTGCCAAAAAAGGTTCCTCTAAGGCGGGGGGCATTCGCTTTGCTGAAGcaaatgctgctgctgctgctcactCCCATGTGCACTTTGATGAGAAGCTGCACGACTCTGTTGTCATGGTGATTCCTGAGTCTGATGGGAACTTCTTGGTTAAGGTGGGCTTCCTGAAGATTCAACACAGGTATGAAATTGTCTTCACGCTGCCAGAGGTTCCAGGGCTTGGGGATGATGTTTGTCCGGCTCCTGTGCCCAACCCTTACCTTCAGATTAAAGATCTTACTGCAGCCCCTAGCGGAGGTTTAAAGGTGATGTGTGAGTATGTGGCTCACAAGGAGGGTGTGCTGTGTGAGGAGATGCTAATACTCAGTGAAAGCAAAGAGGATGTGTGCCTGAAGGTGAAAGTTCACGCTCGTGTTATGGatCGACATCATGGGACACCTATGTTATTAGAAGGGGTACGATGTGTTGGAGCAGAGCTTGAGTATGACTCAGAGCAAAGTGATTGGCAAGGATTTGACTAATTGGTGACCTGTTCCTCTCAGATATTCTCACTGATAGTGTAAATGttggaataaacacacacacacacacacacacacacacacacacacacacacacactgtatatttacagtactgtgcaaaagtcttaggcaccctgttTAGTAAAaattttgttaatgtttatagATGTTTTATGAGTTCTGCATTACTGaatcagtacaaaaatattttatatttccaaacattacttttccaacaaaaaaattaaatgttatagaagAATGTTTGTATaccagtaaagaaagcaacatattacgtaacagaccacttttcagacaaaaaatataatgaGGACTGCTgtctgtggcagattctccaagatgctcagtaaaacttaccagccaatttccttataaaactgcgcAAAATGTACAATGAGATTactgatgcttttttttctaaagtaaatggttatcacaccaaatattgtctttttttttagtttattactgtttactgctctttatagaatTGTTTTGttaagaaatgtttaatttcatcatttctgaAAGCATATTTGCTTTACAGCAGTTTTTTGCATATACCTAATACTTTAGTACAgtactgtctctgtgtgtgtgtgtgtgtatatatatatat
>XM_026936810.2
CAGTAATCACTCCCTAATTAATCTGGCAGCCGAGCTCGTGTGTCGAGATTGGAGAGTTGAAGCAGATTTGAAAGCAAAACTGTGGAATCATATTGAAATTGTCAGAAGAAGGCAATCAGAAGGGTTATTGTTGGTACATCATCATGACGCTGTGACTGATTCTCTGTcttaacaaacacaaatatggcaACTGCCAAAAAAGGTTCCTCTAAGGCGGGGGGCATTCGCTTTGCTGAAGcaaatgctgctgctgctgctcactCCCATGTGCACTTTGATGAGAAGCTGCACGACTCTGTTGTCATGGTGATTCCTGAGTCTGATGGGAACTTCTTGGTTAAGGTGGGCTTCCTGAAGATTCAACACAGGTATGAAATTGTCTTCACGCTGCCAGAGGTTCCAGGGCTTGGGGATGATGTTTGTCCGGCTCCTGTGCCCAACCCTTACCTTCAGATTAAAGATCTTACTGCAGCCCCTAGCGGAGGTTTAAAGGTGATGTGTGAGTATGTGGCTCACAAGGAGGGTGTGCTGTGTGAGGAGATGCTAATACTCAGTGAAAGCAAAGAGGATGTGTGCCTGAAGGTGAAAGTTCACGCTCGTGTTATGGatCGACATCATGGGACACCTATGTTATTAGAAGGGGTACGATGTGTTGGAGCAGAGCTTGAGTATGACTCAGAGCAAAGTGATTGGCAAGGATTTGACTAATTGGTGACCTGTTCCTCTCAGATATTCTCACTGATAGTGTAAATGttggaataaacacacacacacacacacacacacacacacacacacacacacacactgtatatttacagtactgtgcaaaagtcttaggcaccctgttTAGTAAAaattttgttaatgtttatagATGTTTTATGAGTTCTGCATTACTGaatcagtacaaaaatattttatatttccaaacattacttttccaacaaaaaaattaaatgttatagaagAATGTTTGTATaccagtaaagaaagcaacatattacgtaacagaccacttttcagacaaaaaatataatgaGGACTGCTgtctgtggcagattctccaagatgctcagtaaaacttaccagccaatttccttataaaactgcgcAAAATGTACAATGAGATTactgatgcttttttttctaaagtaaatggttatcacaccaaatattgtctttttttttagtttattactgtttactgctctttatagaatTGTTTTGttaagaaatgtttaatttcatcatttctgaAAGCATATTTGCTTTACAGCAGTTTTTTGCATATACCTAATACTTTAGTACAgtactgtctctgtgtgtgtgtgtgtgtatatatatatat
>XM_034303277.1
AAAGCACTGGCACACGGCCTCCCCAAACGCTAAGTTATCTGCGCACTTTTCTTACCACCCgtttttaagccattttgtgcACGTGATTTACCAGGcccaaatgaaaagaaattaacGTGGCAGCCGACCTTGTGTGTCAAGATTGGAGAGGGTTATTGTTGGTACATCATCATGACGCTGTGACTGATTCTCTGTcttaacaaacacaaatatggcaACTGCCAAAAAAGGTTCCTCTAAGGCGGGGGGCATTCGCTTTGCTGAAGcaaatgctgctgctgctgctcactCCCATGTGCACTTTGATGAGAAGCTGCACGACTCTGTTGTCATGGTGATTCCTGAGTCTGATGGGAACTTCTTGGTTAAGGTGGGCTTCCTGAAGATTCAACACAGGTATGAAATTGTCTTCACGCTGCCAGAGGTTCCAGGGCTTGGGGATGATGTTTGTCCGGCTCCTGTGCCCAACCCTTACCTTCAGATTAAAGATCTTACTGCAGCCCCTAGCGGAGGTTTAAAGGTGATGTGTGAGTATGTGGCTCACAAGGAGGGTGTGCTGTGTGAGGAGATGCTAATACTCAGTGAAAGCAAAGAGGATGTGTGCCTGAAGGTGAAAGTTCACGCTCGTGTTATGGatCGACATCATGGGACACCTATGTTATTAGAAGGGGTACGATGTGTTGGAGCAGAGCTTGAGTATGACTCAGAGCAAAGTGATTGGCAAGGATTTGACTAATTGGTGACCTGTTCCTCTCAGATATTCTCACTGATAGTGTAAATGttggaataaacacacacacacacacacacacacacacacacacacacacacacactgtatatttacagtactgtgcaaaagtcttaggcaccctgttTAGTAAAaattttgttaatgtttatagATGTTTTATGAGTTCTGCATTACTGaatcagtacaaaaatattttatatttccaaacattacttttccaacaaaaaaattaaatgttatagaagAATGTTTGTATaccagtaaagaaagcaacatattacgtaacagaccacttttcagacaaaaaatataatgaGGACTGCTgtctgtggcagattctccaagatgctcagtaaaacttaccagccaatttccttataaaactgcgcAAAATGTACAATGAGATTactgatgcttttttttctaaagtaaatggttatcacaccaaatattgtctttttttttagtttattactgtttactgctctttatagaatTGTTTTGttaagaaatgtttaatttcatcatttctgaAAGCATATTTGCTTTACAGCAGTTTTTTGCATATACCTAATACTTTAGTACAgtactgtctctgtgtgtgtgtgtgtgtatatatatatat

Function

symbol description
si:ch211-74f19.2 Orthologous to human C20orf27 (chromosome 20 open reading frame 27).

NR:

description
PREDICTED: UPF0687 protein C20orf27 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936807.2 False 1359 mRNA 0.39 6 10460219 10473670
XM_026936808.2 True 1421 mRNA 0.39 7 10460219 10473649
XM_026936809.2 False 1412 mRNA 0.39 7 10460219 10473515
XM_026936810.2 False 1351 mRNA 0.39 6 10460219 10474141
XM_034303277.1 False 1379 mRNA 0.40 6 10460219 10473998

Neighbor

gene id symbol gene type direction distance location
vax2 vax2,LOC107697471 coding downstream 11742 10430289 ~ 10448477 (-)
shtn2 LOC108267975 coding downstream 43654 10406112 ~ 10416565 (-)
tex261 tex261,LOC107755640 coding downstream 55303 10398553 ~ 10404916 (-)
f13a1b LOC108267979,LOC108411459 coding downstream 100816 10346280 ~ 10359403 (-)
LOC113540334 LOC108267980 coding downstream 116088 10333469 ~ 10344131 (-)
trnan-guu NA coding upstream 255 10474396 ~ 10474470 (-)
trnan-guu_1 NA coding upstream 1482 10475623 ~ 10475696 (-)
trnan-guu_2 NA coding upstream 2717 10476858 ~ 10476930 (-)
trnan-guu_3 NA coding upstream 5158 10479299 ~ 10479372 (-)
trnan-guu_4 NA coding upstream 6376 10480517 ~ 10480591 (-)
G62109 LOC108267978 non-coding downstream 89656 10368321 ~ 10370563 (-)
G62108 LOC108267978,LOC108411458 non-coding downstream 95327 10364012 ~ 10364892 (-)
LOC113540369 LOC108267738,LOC108267937,LOC108267740,LOC108267931,LOC108267932,LOC108267929 non-coding downstream 248987 10202231 ~ 10211232 (-)
LOC113540700 NA non-coding downstream 418440 10041567 ~ 10041779 (-)
LOC117597227 NA non-coding downstream 419525 10040482 ~ 10040694 (-)
G62125 NA non-coding upstream 629 10474770 ~ 10483928 (-)
LOC117596989 NA non-coding upstream 23380 10497521 ~ 10499087 (-)
G62167 NA non-coding upstream 59932 10534073 ~ 10534422 (-)
G62183 NA non-coding upstream 98014 10572155 ~ 10572360 (-)
G62469 LOC108267929 non-coding upstream 452699 10926840 ~ 10953744 (-)
LOC113540372 NA other downstream 379982 10078688 ~ 10080237 (-)
cxcl19 LOC108267987 other downstream 386990 10070406 ~ 10073229 (-)
G61900 NA other downstream 418453 9605727 ~ 10041766 (-)
G61972 actn3,LOC106577856,LOC106608893 other downstream 654901 9776278 ~ 9805318 (-)
G61537 NA other downstream 1121474 9337826 ~ 9338745 (-)
trnan-guu_9 NA other upstream 12527 10486668 ~ 10486741 (-)
trnan-guu_10 NA other upstream 16207 10490348 ~ 10490421 (-)
trnan-guu_11 NA other upstream 17449 10491590 ~ 10491663 (-)
trnan-guu_12 NA other upstream 21024 10495165 ~ 10495238 (-)
gba2 gba2,LOC107749818,LOC107741462 other upstream 64104 10538245 ~ 10562006 (-)

Expression


Co-expression Network