LOC113540363


Basic Information

Item Value
gene id LOC113540363
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 10093747 ~ 10095116 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936816.2
CTCTGCAGCACTTGACACAAGTGGTCTCCtgaatttctttaattaaaaaaaataatgaagtctTCAGCTCTAGCTATCACTGTTTTAACCTGTGCTCTCTTGGCAATGACAGAAGGAGTTCCGGCCCTGTATCACCGATGTCAGTGTACAGACACAGTGGCAAAGGAAATCTCTGATCATAGAATTGTGAAGCTGGAGATTTTTCAACCTGGTCCTCACTGCAAAGATATAGaagtaatTGCTACACTGAAATTCCGGAAGGAAATTAAATTGTGCCTCAACCCCAACGACAAGTGGGTGCAGAACGCCCTCAAAAGAAGGAACCTGGACCATGGAATGCTACTGCAATGAAGATGgttgaaagagaagaaaagaaagaagaactgaagaaacgtctcTTAGCACCTCAGTCTTTCTTCACTCAACATATTATTAATTAAGATCTAGtagtatttttatacattttctgtatctaataaaaccaacaaacttatatttttaattacaacgatttatgaacatttcactaatattactaataaagtatttttaaaaaaattctatactGTGTATGTTATTCATAGATTCATAGTCATGCTTTAGTTGCTTCGTCAGTGACTCAGATGGCTCTAAATAACTGGATCAGACAGTAGTATAAACAGTGAATATCTCTGTAAGACATGCAACCCCTCCTGTAGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936816.2 True 700 mRNA 0.36 4 10093747 10095116

Neighbor

gene id symbol gene type direction distance location
trmt10b trmt10b coding downstream 40533 10046572 ~ 10053214 (-)
intu intu coding downstream 69970 9997315 ~ 10023777 (-)
aadat aadat,LOC102781018 coding downstream 100880 9980997 ~ 9992867 (-)
mfap3l mfap3l coding downstream 113081 9972383 ~ 9980666 (-)
pfdn2 pfdn2,LOC107745204 coding downstream 173956 9914234 ~ 9919791 (-)
LOC113540311 LOC108267981 coding upstream 663 10095779 ~ 10106529 (-)
LOC117597105 LOC108267929 coding upstream 16046 10111162 ~ 10143429 (-)
LOC113538503 LOC108261535 coding upstream 72801 10167917 ~ 10189928 (-)
LOC113547269 NA coding upstream 136558 10231674 ~ 10236612 (-)
LOC117596978 LOC108267983,LOC108267929 coding upstream 213535 10308651 ~ 10320200 (-)
LOC113540700 NA non-coding downstream 51968 10041567 ~ 10041779 (-)
LOC117597227 NA non-coding downstream 53053 10040482 ~ 10040694 (-)
LOC113540709 NA non-coding downstream 54160 10039380 ~ 10039587 (-)
LOC113540720 NA non-coding downstream 54981 10038554 ~ 10038766 (-)
LOC117597222 NA non-coding downstream 56390 10037145 ~ 10037357 (-)
LOC113540369 LOC108267738,LOC108267937,LOC108267740,LOC108267931,LOC108267932,LOC108267929 non-coding upstream 107115 10202231 ~ 10211232 (-)
G62108 LOC108267978,LOC108411458 non-coding upstream 268896 10364012 ~ 10364892 (-)
G62109 LOC108267978 non-coding upstream 273205 10368321 ~ 10370563 (-)
G62125 NA non-coding upstream 379654 10474770 ~ 10483928 (-)
LOC117596989 NA non-coding upstream 402405 10497521 ~ 10499087 (-)
LOC113540372 NA other downstream 13510 10078688 ~ 10080237 (-)
cxcl19 LOC108267987 other downstream 20518 10070406 ~ 10073229 (-)
G61900 NA other downstream 51981 9605727 ~ 10041766 (-)
G61972 actn3,LOC106577856,LOC106608893 other downstream 288429 9776278 ~ 9805318 (-)
LOC113526752 LOC100862731,LOC108267340,LOC108267722,LOC108267272,LOC108267273,LOC108261494,LOC108267212,LOC108261855,LOC100379168 other downstream 564922 8639468 ~ 9528825 (-)
trnan-guu_9 NA other upstream 391552 10486668 ~ 10486741 (-)
trnan-guu_10 NA other upstream 395232 10490348 ~ 10490421 (-)
trnan-guu_11 NA other upstream 396474 10491590 ~ 10491663 (-)
trnan-guu_12 NA other upstream 400049 10495165 ~ 10495238 (-)
gba2 gba2,LOC107749818,LOC107741462 other upstream 443129 10538245 ~ 10562006 (-)

Expression


Co-expression Network