mta2 (mta2,LOC107679264,LOC107660724,LOC107709145,LOC107731904,LOC107558444)


Basic Information

Item Value
gene id mta2
gene name mta2,LOC107679264,LOC107660724,LOC107709145,LOC107731904,LOC107558444
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 20549680 ~ 20565417 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936852.2
aggaagaggaggatgaagctGGAGCGGAGGATGGGAGGAAGAGTGGcgtgagacacacacaggctggCTGCCGAGGACCTCGCGTAcatgcgcgcgcgcgtgtgtgtctgtgtgtatgtgtgtatatgtgtgtgtgagagggtgagCGTGAGCGCGTGAGTGACTGGGACTTTTGGAGGGACTTCATTAGCGGACCGAGACAAAGAGACGCGTTTGAAACGTCCTGAGGCACGCTGTAAGGGAAAGTTGAAACTTTTCGGCGCCGCCACAGCTCGCGCTGCCGTGCCGGTCCCGGCTTTGTCTCTACACAGCGGAGCGCGACGGTACATGCAGGAGTGAAAATCAACATCCGCTTGATATTTTAATCACGCAAGAGGGGAAGCCGTCGGTGTGCGTTTGCGGGGAGGAGGAGTAGTAAGAGAATGGCGGCCAACATGTACCGCGTCGGAGATTATGTGTACTTTGAGAATTCGTCCAGTAATCCTTACCTGATCCGTCGAATAGAAGAACTCAACAAGACGGCCAACGGAAACGTAGAAGCCAAGGTCGTGTGCCTCTTCAGGAGGAGAGATATATCTAGCAATCTCAACACTCTGGCTGACAGCAATGCTAGAGACTTTGAGGAGGAGTCCAAGCAgccaccaatcactgatcaacagAAACACCAGCTGAAACACAGAGAACTGTTCCTGTCCCGACAGTTTGAGTCTCTTCCTGCCACACACATACGGGGGAAATGTAACGTCACACTTCTGAATGAGACTGATGTTTTAACAGGCTACCTAGAGAGAGAGGACTGTTTCTTCTACTCGTTGGTGTTTGACCCGGTTCAGAAAACCCTGCTGGCTGACCAGGGCGAGATCAGGGTGGGCTCCAAATATCAGGCTGAGATTCCTGACAAATTGGCAGAAGGGGACTCGGACAATCGAGTACAAGAGAAACTGGAGACGAAGGTATGGGATCCGGATAACCAGCTGAAGGACTCTCAGATAGATCAGTTCCTGGTGGTGGCCCGGGCTGTGGGGACTTTTGCCCGTGCCTTAGACTGCAGCAGCTCCATCCGCCAGCCAAGTCTGCACATGAGTGCAGCAGCTGCATCCAGAGACATCACCCTGTTCCACGCTATGGACACACTGCAGAAGAATGGTTATGACTTGGCCAAGGCCATGTCCACGCTGGTGCCGCAGGGCGGCCCCGTGCTCTGCCGTGACGAGATGGAAGAGTGGAGTGCCTCGGAAGCCATGTTGTTCGAGGAAGCACTAGAGAAGTATGGAAAGGACTTCAATGACATTCGCCAGGACTTTtTGCCTTGGAAGTCTTTAGCCAGTGTTGTTCAATTCTATTACATGTGGAAAACCACAGACCGTTACATTCAGCAGAAAAGACTGAAGGCAGCAGAAGCAGACAGTAAACTGAAACAGGTTTACATCCCCACCTACACCAAGCCCAACCCTAACCAGATTATGGCTCCTGGTAACAAACCCGGCATGAACGGAGCTGCAGGCTTTCAAAAAGGCCTGTGCTGCGAGAGCTGCCATACTGCTCAGTCTCCTCAGTGGTATGCTTGGGGTCCTCCTAACATGCAGTGTCGACTCTGCGCCTCCTGCTGGATTTACTGGAAGAAGTATGGTGGGCTGAAGACACCCACTCAGTTAGAGGGCGCTACAAGAGCTGGCTCGGACGCACCCTCACGTAGTCACATGACTCGTCAGGAAGTGCAGGGCATGTCCCCGTTCACTAATAATGCCGGTAGAGCCAAGCTTTTGGCTAAAAATCGGCAGACATTTATTCTGCAGACCACCAAGCTGACCCGCATCGCCCGTCGAGTGTGCCAGGACATCCTGCAGTCACGTCGTGCTGCCCGCCGCCCTTATGCATCTATCAACGCCAATGCTGTCAAAGCAGAGTGTATGATCAGACTCCCTAAAGTAGCAAAAAGTGCTATAAAGAACCGTCCTGTTCCACGACCATCTCTTGTTAACATAGTCAAAGAATTGGctgtccaggcTCCCCTTAAACTCAAAGCTCCTAGAGGTGCTCCCACCCCAATCAACCGTAACCAGGCCAACCAGCCCCGCAGTGCAACTGCCCTGCTTGGCAAGAGACCCTTCGATAGTGGGGGAGGACACTCGTTCTCCACCAATGGGAGGCCCTTTATGAGCGGCATGCGGACGACCGCTCAATCGGTCATAAAGCGCCAGAGAGTTAGTCAGGCAGATGCCCCAAATCCTGTAGTCTTTGTGGCTACTAAAGAAAccagGGCCCTGAGGAAACACCTTTCTCAGGGTGAAATGAGACGAGCAGCTAGGAAACCCAACATCCCTGTCAGAGTGAAATTTCCTCTGCCACCACGGCCAATTCCTGTCCCCGTTCTGCCCTCTAGCACCAGCGAGCCAATCGTACTGGAGGACTAATGACAATTCTTTTAGGCTGCATCACCTCACATCTCCCCATCTTTATGccctcctttctttttcccctttgttccacacaaaaaaatctgtgCTCTGTCTTCCCCTctcaatcatttttttctttatcttacaaatatattttgccTGTCCATATTTTCTTGTTCACTTTTCCATGCGATCATTCAACCTGTGAGCTTCATAAAGAAACATATGCACACAGATCAGTTTATGCCCCACATAatgacacagcagcacacatcAGGCTTTCATAATGGActttgtagtgttttattcttgtaGTATAGGTTATTCCCCTccccttcctcttttttttttaatgccgaatatttttaactgtgtaatTTAAATCTGATAATGCGCAACATGAAATGATGGTGATAAagcacactttatttttgtcctCCAGGTCTAtctttatttgtgtaaatattaacatttttcaggAGTGATATCTTTAA

Function

symbol description
mta2 Predicted to enable histone deacetylase binding activity; transcription coactivator activity; and transcription corepressor activity. Acts upstream of or within fin regeneration. Predicted to be located in nucleus. Predicted to be part of NuRD complex. Predicted to be active in nucleoplasm. Orthologous to human MTA2 (metastasis associated 1 family member 2).

NR:

description
PREDICTED: metastasis-associated protein MTA2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0060215 primitive hemopoiesis biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003682 chromatin binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11660 MTA; metastasis-associated protein MTA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936852.2 True 2893 mRNA 0.50 18 20549680 20565417

Neighbor

gene id symbol gene type direction distance location
eml3 eml3,LOC107558446,LOC107731903,LOC107679271,LOC107660723,LOC107709062 coding upstream 4932 20504764 ~ 20544748 (+)
si:dkey-28a3.2 LOC108267583 coding upstream 52925 20485644 ~ 20496755 (+)
rtn3 rtn3,LOC108267754,LOC108440822,LOC103032175,LOC107679257,LOC107731898 coding upstream 69883 20458841 ~ 20479797 (+)
rgs12a LOC108268015 coding upstream 138024 20378775 ~ 20411656 (+)
msantd1 msantd1 coding upstream 171810 20374263 ~ 20377870 (+)
cth1 cth1,LOC108268299,LOC108440851,LOC103030689 coding downstream 2489 20567906 ~ 20570053 (+)
taf6l taf6l,LOC107660726,LOC107679290,LOC107731936 coding downstream 4954 20570371 ~ 20577481 (+)
LOC113539982 LOC108267206,LOC108440832 coding downstream 14357 20579774 ~ 20582012 (+)
ehbp1l1a LOC108267830 coding downstream 22195 20587612 ~ 20630986 (+)
si:ch73-40a2.1 LOC108267785 coding downstream 71811 20637228 ~ 20649186 (+)
G67958 LOC108267586 non-coding upstream 67925 20480600 ~ 20481755 (+)
G67827 NA non-coding upstream 274005 20250058 ~ 20275675 (+)
G67642 snrpf,LOC107738052,LOC107558408,LOC106609479 non-coding upstream 583792 19962599 ~ 19965888 (+)
G67595 NA non-coding upstream 632511 19916600 ~ 19917169 (+)
G67594 NA non-coding upstream 635277 19911739 ~ 19914403 (+)
G68054 NA non-coding downstream 69931 20635348 ~ 20635565 (+)
G68070 NA non-coding downstream 126846 20692263 ~ 20693111 (+)
G68192 NA non-coding downstream 299461 20864878 ~ 20895955 (+)
G68299 NA non-coding downstream 623114 21188531 ~ 21189134 (+)
G68304 NA non-coding downstream 640328 21205745 ~ 21209324 (+)
fcer1g LOC100305060 other upstream 394903 20147795 ~ 20154777 (+)
dock11 dock11,LOC107683516 other upstream 482460 19990684 ~ 20067220 (+)
G66864 NA other upstream 1691028 18856456 ~ 18858652 (+)
G66492 LOC108267609,LOC108437090 other upstream 2341116 18197312 ~ 18208564 (+)
frem1a frem1 other upstream 2406049 18113433 ~ 18143631 (+)
G68232 LOC108267516 other downstream 454841 21020258 ~ 21033753 (+)
plag1 plag1,LOC107570635 other downstream 748801 21314218 ~ 21323967 (+)
mettl4 mettl4 other downstream 1063659 21629076 ~ 21640157 (+)
LOC113540377 NA other downstream 1186999 21752416 ~ 21762301 (+)
LOC113540463 NA other downstream 2084393 22649810 ~ 22652447 (+)

Expression


Co-expression Network