LOC113540392


Basic Information

Item Value
gene id LOC113540392
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 24145082 ~ 24148968 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936855.2
ttgacaataaaaataatcctggATTTCTGTTTCATTCAGTATAAAATTCGTGCTAATATGTCTTGTCGGGGGAAAAAAGGTGCACACTTTCATATTTAGTGATGAAAATAAGGACAGTATTCTGGataaattaaagcaaaagcACCATATCAGTTTaatggaaacaaaaaacaaacaaaaacaggaagaaaaaaaaacgaaatgGGAACAGATGTACCGTATGCATTCTGATCTTATAATTCAGTtggatattatatattaaaataataataataataataataataataataataaaatctgaaggtgtgcagaattttttttttgtagttccGGTCGGTTGCCATGGATACAGTTTTTACGGTGAACAACAGGAAGTATGAGAAGCCTCTCTGGGTGCCATTCACCAGTGTTTATGCAGAAGGAGCCATAAACACAAGAGGCCATGTTTGTCGGTTGCATAAGGACAATGGAAAGAAGAGGAAGGGGTTATCAGTTAATTAGAACAGCGCCTCCTGTATATAGTGCAGCTCTGAGATGGGCGGGGCCTACCGACCATGACCGGAGAAAATGGGCGGGGCTTGTTAGCGCAGAGCGAGGGAGATGGGCGGGGCCTGTTAACCCAGCGCGATACAATGGCTCCGCCCACTTCTCCACAACTAGTGACaGTAAAAGACCAAGAACACATGACCAAGAGGACAGGACACTGATCCCCACCATTCCAGCACCATCTCAGGGTGTCTCTTTGCCAAGAATTACTGACAAGGATTTCTTAATCACGTGCTTAACACGACAAATTGAGTATCTACACATATCTAAAGGATTGAGTGCACCAAAGAGAGCTTCATCAGCCAGGAGTGCCGATTTGTTGCACGAGCCAGCCATCTGCTGTGACTGGCCAGAATCCGCCAAAGTTCTGAGACATCATCGTAAAAACAAGCTAAGGATGCTGACACACAGGTGGAAGAGGCTTGGTATCCAGGATCCTGTCGGTGGTAACAGGAATGACTACACACCTGAGCAGAGCCATAGAAAGAACCAGCTTGCAATGGAAACAGACTCTTTACTGAAAATTACCCCCATAAAGGCCAGTCAAGCTGCAGCTCAGAGTGAAAATGGGGAAACAAATGGCTTACACTGTTTGAGTTTGAACATTTCTGGAGTTGGACTTTCAAAGGGGAAAGTAAGTGACAAACACTCGTCATTTAACATGTCAGGATCATCGGAGTGCCACACCGACAGCGACCTTTCAGATCAAGAGCAGGAAAGCACTGAAATGTCAAAGTGGGCAGCAGCCATGGAATTAGAGTTGAAGCCAGAGCCTTTTGACGAGGACCTGGACCTGGACTGTCTTTCCACAGAAACAGCATTTTACCCAGAGGTTCTTCCTGCTTCACTCAAAGTCCTGGACTCCACACAGAGTCTGTCCTCTGAGATACAGCAAAGTCTTTTTGTGTCTGATCCTTGCCTTGCTCCTGTAATAGCACGGCTGACAGAGTTAGAAAGGCTTCAGGCTGCTACTGTGCAGAAAGAACGAGCAAAACTAGCACGATCCCAACCAGCTACTGCTAATACACGAAACGGCAATCGTTTGAGAAAAAGTGACCTTCCAGGATGCAAGACAGGGATTTCAAGGGATGTGGAAAGCAACTCTGTTATGTGTAGTTTTACCAAACTCATGGTTTGTCCCAACTCTTCATGCAGATGCAGGCCTCATACTTGCCCTTCGACAAAATCAGGCCAAGGAAGCAGGAGCAAGTTACTACATTCTACCTTACCTAAACATCCTGACAATCTGTCAGGCAGATGCAAAAAAGCTGAAACTGTGCTCCCAGCTTTCTCTGTTAGTATGAAGGTCCCCCAAAAACCCACAGTGCCAAACAGGACCAagagtccacacacacagagagactcaaCTTCTGCCAAAAAGGCAACCGTTCCTAACAGGAAAACTTAATCCTGGTATTCATCAGTGTCGGATGTTTGTCATTTAGGTACTGCAGTCCTGTAAGGTTTTAATTATATCGGGACATAAGTATGTATATCTATGGTAAAAGGTATTTATTGCTCAAAATATAAGCAccagaaaacatgaaaaaagacCACAGGAGtattacaactttttttttctttatttattcatggcTTATATTGTCATTATACAATGTGCATCTgttgaatgaatatgaatgcaGTATTTGAACAGTTCATTTGAAAACTCCTGATGtctgtgaatgagtgaagagATGATGGGCTTCTTTAAAAAAGGATTTCAGCAAAAGGGTGTGTGACTAGTCAGGTTATCCTCCTTGTAGGGCTGTATAGTGATCAGAAGAGGAAGGAAATGTCGACTTAccctaaaataaaaacaaattcaagTTAGTGTTGAGGATCACGTGTAAAGACACGGctcagtgaaaaagaaaaaaaaaaagaaaaaaaaaaaaaagaagggtaTTACCTTTCAGTTCTTCAATTTGGCTATACCACCAATTTATTACAATGTTTCAGAAAA
>XM_034303198.1
ttgacaataaaaataatcctggATTTCTGTTTCATTCAGTATAAAATTCGTGCTAATATGTCTTGTCGGGGGAAAAAAGGTGCACACTTTCATATTTAGTGATGAAAATAAGGACAGTATTCTGGataaattaaagcaaaagcACCATATCAGTTTaatggaaacaaaaaacaaacaaaaacaggaagaaaaaaaaacgaaatgGGAACAGATGTACCGTATGCATTCTGATCTTATAATTCAGTtggatattatatattaaaataataataataataataataataataataataaaatctgaaggtgtgcagaattttttttttgtagttccGGTCGGTTGCCATGGATACAGTTTTTACGGTGAACAACAGGAAGTATGAGAAGCCTCTCTGGGTGCCATTCACCAGTGTTTATGCAGAAGgttcaGTCGCTCTGCCTGACAGATATTATCTTGAGGTATGAGAAGTGACATATCGCTAATCTCTCTTTAGGAGCCATAAACACAAGAGGCCATGTTTGTCGGTTGCATAAGGACAATGGAAAGAAGAGGAAGGGGTTATCAGTTAATTAGAACAGCGCCTCCTGTATATAGTGCAGCTCTGAGATGGGCGGGGCCTACCGACCATGACCGGAGAAAATGGGCGGGGCTTGTTAGCGCAGAGCGAGGGAGATGGGCGGGGCCTGTTAACCCAGCGCGATACAATGGCTCCGCCCACTTCTCCACAACTAGTGACaGTAAAAGACCAAGAACACATGACCAAGAGGACAGGACACTGATCCCCACCATTCCAGCACCATCTCAGGGTGTCTCTTTGCCAAGAATTACTGACAAGGATTTCTTAATCACGTGCTTAACACGACAAATTGAGTATCTACACATATCTAAAGGATTGAGTGCACCAAAGAGAGCTTCATCAGCCAGGAGTGCCGATTTGTTGCACGAGCCAGCCATCTGCTGTGACTGGCCAGAATCCGCCAAAGTTCTGAGACATCATCGTAAAAACAAGCTAAGGATGCTGACACACAGGTGGAAGAGGCTTGGTATCCAGGATCCTGTCGGTGGTAACAGGAATGACTACACACCTGAGCAGAGCCATAGAAAGAACCAGCTTGCAATGGAAACAGACTCTTTACTGAAAATTACCCCCATAAAGGCCAGTCAAGCTGCAGCTCAGAGTGAAAATGGGGAAACAAATGGCTTACACTGTTTGAGTTTGAACATTTCTGGAGTTGGACTTTCAAAGGGGAAAGTAAGTGACAAACACTCGTCATTTAACATGTCAGGATCATCGGAGTGCCACACCGACAGCGACCTTTCAGATCAAGAGCAGGAAAGCACTGAAATGTCAAAGTGGGCAGCAGCCATGGAATTAGAGTTGAAGCCAGAGCCTTTTGACGAGGACCTGGACCTGGACTGTCTTTCCACAGAAACAGCATTTTACCCAGAGGTTCTTCCTGCTTCACTCAAAGTCCTGGACTCCACACAGAGTCTGTCCTCTGAGATACAGCAAAGTCTTTTTGTGTCTGATCCTTGCCTTGCTCCTGTAATAGCACGGCTGACAGAGTTAGAAAGGCTTCAGGCTGCTACTGTGCAGAAAGAACGAGCAAAACTAGCACGATCCCAACCAGCTACTGCTAATACACGAAACGGCAATCGTTTGAGAAAAAGTGACCTTCCAGGATGCAAGACAGGGATTTCAAGGGATGTGGAAAGCAACTCTGTTATGTGTAGTTTTACCAAACTCATGGTTTGTCCCAACTCTTCATGCAGATGCAGGCCTCATACTTGCCCTTCGACAAAATCAGGCCAAGGAAGCAGGAGCAAGTTACTACATTCTACCTTACCTAAACATCCTGACAATCTGTCAGGCAGATGCAAAAAAGCTGAAACTGTGCTCCCAGCTTTCTCTGTTAGTATGAAGGTCCCCCAAAAACCCACAGTGCCAAACAGGACCAagagtccacacacacagagagactcaaCTTCTGCCAAAAAGGCAACCGTTCCTAACAGGAAAACTTAATCCTGGTATTCATCAGTGTCGGATGTTTGTCATTTAGGTACTGCAGTCCTGTAAGGTTTTAATTATATCGGGACATAAGTATGTATATCTATGGTAAAAGGTATTTATTGCTCAAAATATAAGCAccagaaaacatgaaaaaagacCACAGGAGtattacaactttttttttctttatttattcatggcTTATATTGTCATTATACAATGTGCATCTgttgaatgaatatgaatgcaGTATTTGAACAGTTCATTTGAAAACTCCTGATGtctgtgaatgagtgaagagATGATGGGCTTCTTTAAAAAAGGATTTCAGCAAAAGGGTGTGTGACTAGTCAGGTTATCCTCCTTGTAGGGCTGTATAGTGATCAGAAGAGGAAGGAAATGTCGACTTAccctaaaataaaaacaaattcaagTTAGTGTTGAGGATCACGTGTAAAGACACGGctcagtgaaaaagaaaaaaaaaaagaaaaaaaaaaaaaagaagggtaTTACCTTTCAGTTCTTCAATTTGGCTATACCACCAATTTATTACAATGTTTCAGAAAA
>XM_034303199.1
cgaaatgGGAACAGATGTACCttccGGTCGGTTGCCATGGATACAGTTTTTACGGTGAACAACAGGAAGTATGAGAAGCCTCTCTGGGTGCCATTCACCAGTGTTTATGCAGAAGgttcaGTCGCTCTGCCTGACAGATATTATCTTGAGGTATGAGAAGTGACATATCGCTAATCTCTCTTTAGGAGCCATAAACACAAGAGGCCATGTTTGTCGGTTGCATAAGGACAATGGAAAGAAGAGGAAGGGGTTATCAGTTAATTAGAACAGCGCCTCCTGTATATAGTGCAGCTCTGAGATGGGCGGGGCCTACCGACCATGACCGGAGAAAATGGGCGGGGCTTGTTAGCGCAGAGCGAGGGAGATGGGCGGGGCCTGTTAACCCAGCGCGATACAATGGCTCCGCCCACTTCTCCACAACTAGTGACaGTAAAAGACCAAGAACACATGACCAAGAGGACAGGACACTGATCCCCACCATTCCAGCACCATCTCAGGGTGTCTCTTTGCCAAGAATTACTGACAAGGATTTCTTAATCACGTGCTTAACACGACAAATTGAGTATCTACACATATCTAAAGGATTGAGTGCACCAAAGAGAGCTTCATCAGCCAGGAGTGCCGATTTGTTGCACGAGCCAGCCATCTGCTGTGACTGGCCAGAATCCGCCAAAGTTCTGAGACATCATCGTAAAAACAAGCTAAGGATGCTGACACACAGGTGGAAGAGGCTTGGTATCCAGGATCCTGTCGGTGGTAACAGGAATGACTACACACCTGAGCAGAGCCATAGAAAGAACCAGCTTGCAATGGAAACAGACTCTTTACTGAAAATTACCCCCATAAAGGCCAGTCAAGCTGCAGCTCAGAGTGAAAATGGGGAAACAAATGGCTTACACTGTTTGAGTTTGAACATTTCTGGAGTTGGACTTTCAAAGGGGAAAGTAAGTGACAAACACTCGTCATTTAACATGTCAGGATCATCGGAGTGCCACACCGACAGCGACCTTTCAGATCAAGAGCAGGAAAGCACTGAAATGTCAAAGTGGGCAGCAGCCATGGAATTAGAGTTGAAGCCAGAGCCTTTTGACGAGGACCTGGACCTGGACTGTCTTTCCACAGAAACAGCATTTTACCCAGAGGTTCTTCCTGCTTCACTCAAAGTCCTGGACTCCACACAGAGTCTGTCCTCTGAGATACAGCAAAGTCTTTTTGTGTCTGATCCTTGCCTTGCTCCTGTAATAGCACGGCTGACAGAGTTAGAAAGGCTTCAGGCTGCTACTGTGCAGAAAGAACGAGCAAAACTAGCACGATCCCAACCAGCTACTGCTAATACACGAAACGGCAATCGTTTGAGAAAAAGTGACCTTCCAGGATGCAAGACAGGGATTTCAAGGGATGTGGAAAGCAACTCTGTTATGTGTAGTTTTACCAAACTCATGGTTTGTCCCAACTCTTCATGCAGATGCAGGCCTCATACTTGCCCTTCGACAAAATCAGGCCAAGGAAGCAGGAGCAAGTTACTACATTCTACCTTACCTAAACATCCTGACAATCTGTCAGGCAGATGCAAAAAAGCTGAAACTGTGCTCCCAGCTTTCTCTGTTAGTATGAAGGTCCCCCAAAAACCCACAGTGCCAAACAGGACCAagagtccacacacacagagagactcaaCTTCTGCCAAAAAGGCAACCGTTCCTAACAGGAAAACTTAATCCTGGTATTCATCAGTGTCGGATGTTTGTCATTTAGGTACTGCAGTCCTGTAAGGTTTTAATTATATCGGGACATAAGTATGTATATCTATGGTAAAAGGTATTTATTGCTCAAAATATAAGCAccagaaaacatgaaaaaagacCACAGGAGtattacaactttttttttctttatttattcatggcTTATATTGTCATTATACAATGTGCATCTgttgaatgaatatgaatgcaGTATTTGAACAGTTCATTTGAAAACTCCTGATGtctgtgaatgagtgaagagATGATGGGCTTCTTTAAAAAAGGATTTCAGCAAAAGGGTGTGTGACTAGTCAGGTTATCCTCCTTGTAGGGCTGTATAGTGATCAGAAGAGGAAGGAAATGTCGACTTAccctaaaataaaaacaaattcaagTTAGTGTTGAGGATCACGTGTAAAGACACGGctcagtgaaaaagaaaaaaaaaaagaaaaaaaaaaaaaagaagggtaTTACCTTTCAGTTCTTCAATTTGGCTATACCACCAATTTATTACAATGTTTCAGAAAA
>XM_034303200.1
aaaaacgaaatgGGAACAGATGTACCttccGGTCGGTTGCCATGGATACAGTTTTTACGGTGAACAACAGGAAGTATGAGAAGCCTCTCTGGGTGCCATTCACCAGTGTTTATGCAGAAGGAGCCATAAACACAAGAGGCCATGTTTGTCGGTTGCATAAGGACAATGGAAAGAAGAGGAAGGGGTTATCAGTTAATTAGAACAGCGCCTCCTGTATATAGTGCAGCTCTGAGATGGGCGGGGCCTACCGACCATGACCGGAGAAAATGGGCGGGGCTTGTTAGCGCAGAGCGAGGGAGATGGGCGGGGCCTGTTAACCCAGCGCGATACAATGGCTCCGCCCACTTCTCCACAACTAGTGACaGTAAAAGACCAAGAACACATGACCAAGAGGACAGGACACTGATCCCCACCATTCCAGCACCATCTCAGGGTGTCTCTTTGCCAAGAATTACTGACAAGGATTTCTTAATCACGTGCTTAACACGACAAATTGAGTATCTACACATATCTAAAGGATTGAGTGCACCAAAGAGAGCTTCATCAGCCAGGAGTGCCGATTTGTTGCACGAGCCAGCCATCTGCTGTGACTGGCCAGAATCCGCCAAAGTTCTGAGACATCATCGTAAAAACAAGCTAAGGATGCTGACACACAGGTGGAAGAGGCTTGGTATCCAGGATCCTGTCGGTGGTAACAGGAATGACTACACACCTGAGCAGAGCCATAGAAAGAACCAGCTTGCAATGGAAACAGACTCTTTACTGAAAATTACCCCCATAAAGGCCAGTCAAGCTGCAGCTCAGAGTGAAAATGGGGAAACAAATGGCTTACACTGTTTGAGTTTGAACATTTCTGGAGTTGGACTTTCAAAGGGGAAAGTAAGTGACAAACACTCGTCATTTAACATGTCAGGATCATCGGAGTGCCACACCGACAGCGACCTTTCAGATCAAGAGCAGGAAAGCACTGAAATGTCAAAGTGGGCAGCAGCCATGGAATTAGAGTTGAAGCCAGAGCCTTTTGACGAGGACCTGGACCTGGACTGTCTTTCCACAGAAACAGCATTTTACCCAGAGGTTCTTCCTGCTTCACTCAAAGTCCTGGACTCCACACAGAGTCTGTCCTCTGAGATACAGCAAAGTCTTTTTGTGTCTGATCCTTGCCTTGCTCCTGTAATAGCACGGCTGACAGAGTTAGAAAGGCTTCAGGCTGCTACTGTGCAGAAAGAACGAGCAAAACTAGCACGATCCCAACCAGCTACTGCTAATACACGAAACGGCAATCGTTTGAGAAAAAGTGACCTTCCAGGATGCAAGACAGGGATTTCAAGGGATGTGGAAAGCAACTCTGTTATGTGTAGTTTTACCAAACTCATGGTTTGTCCCAACTCTTCATGCAGATGCAGGCCTCATACTTGCCCTTCGACAAAATCAGGCCAAGGAAGCAGGAGCAAGTTACTACATTCTACCTTACCTAAACATCCTGACAATCTGTCAGGCAGATGCAAAAAAGCTGAAACTGTGCTCCCAGCTTTCTCTGTTAGTATGAAGGTCCCCCAAAAACCCACAGTGCCAAACAGGACCAagagtccacacacacagagagactcaaCTTCTGCCAAAAAGGCAACCGTTCCTAACAGGAAAACTTAATCCTGGTATTCATCAGTGTCGGATGTTTGTCATTTAGGTACTGCAGTCCTGTAAGGTTTTAATTATATCGGGACATAAGTATGTATATCTATGGTAAAAGGTATTTATTGCTCAAAATATAAGCAccagaaaacatgaaaaaagacCACAGGAGtattacaactttttttttctttatttattcatggcTTATATTGTCATTATACAATGTGCATCTgttgaatgaatatgaatgcaGTATTTGAACAGTTCATTTGAAAACTCCTGATGtctgtgaatgagtgaagagATGATGGGCTTCTTTAAAAAAGGATTTCAGCAAAAGGGTGTGTGACTAGTCAGGTTATCCTCCTTGTAGGGCTGTATAGTGATCAGAAGAGGAAGGAAATGTCGACTTAccctaaaataaaaacaaattcaagTTAGTGTTGAGGATCACGTGTAAAGACACGGctcagtgaaaaagaaaaaaaaaaagaaaaaaaaaaaaaagaagggtaTTACCTTTCAGTTCTTCAATTTGGCTATACCACCAATTTATTACAATGTTTCAGAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936855.2 False 2515 mRNA 0.42 8 24145082 24148968
XM_034303198.1 True 2585 mRNA 0.42 8 24145082 24148968
XM_034303199.1 False 2276 mRNA 0.44 9 24145279 24148968
XM_034303200.1 False 2211 mRNA 0.44 9 24145274 24148968

Neighbor

gene id symbol gene type direction distance location
ccr9a LOC108267400 coding upstream 8274 24134676 ~ 24136808 (+)
zgc:136930 LOC108267402,LOC107599883,LOC107733879,LOC108430265,LOC107657418,LOC107559002 coding upstream 17846 24121553 ~ 24127236 (+)
LOC113540619 NA coding upstream 120917 24021065 ~ 24024165 (+)
LOC113540051 NA coding upstream 128339 24013856 ~ 24016743 (+)
mycb LOC108268289 coding upstream 494449 23648271 ~ 23650633 (+)
si:dkey-154p10.3 LOC108267397,LOC107736657 coding downstream 12810 24161778 ~ 24170467 (+)
LOC113540614 NA coding downstream 21678 24170646 ~ 24174507 (+)
opn4.1 opn4m2 coding downstream 26290 24175258 ~ 24176754 (+)
tmem53 tmem53,LOC107700979,LOC107730786,LOC107599888,LOC107733878,LOC107657452 coding downstream 29999 24178967 ~ 24183754 (+)
rnf220a rnf220,rnf220a,LOC107557077 coding downstream 145668 24294636 ~ 24409297 (+)
G69987 NA non-coding upstream 6194 24138635 ~ 24138888 (+)
G69966 NA non-coding upstream 60864 24083606 ~ 24084218 (+)
G69946 NA non-coding upstream 135222 24007703 ~ 24009860 (+)
G69878 abcf2,abcf2a,LOC107599875,LOC107657436,LOC107709809 non-coding upstream 202010 23940241 ~ 23943072 (+)
G69870 NA non-coding upstream 222386 23921800 ~ 23922696 (+)
G70129 ccdc24 non-coding downstream 417277 24566245 ~ 24566613 (+)
G70130 NA non-coding downstream 418032 24567000 ~ 24567318 (+)
G70134 NA non-coding downstream 421680 24570648 ~ 24570850 (+)
G70138 NA non-coding downstream 425368 24574336 ~ 24574570 (+)
G70139 NA non-coding downstream 434208 24583176 ~ 24583376 (+)
G69971 NA other upstream 35193 24108795 ~ 24109889 (+)
klhl18 klhl18,LOC107657445,LOC107701005,LOC107733883,LOC107730797 other upstream 38859 24028106 ~ 24106223 (+)
G69509 LOC108267411 other upstream 824739 23318504 ~ 23320343 (+)
LOC113540463 NA other upstream 1492635 22649810 ~ 22652447 (+)
LOC113540377 NA other upstream 2382781 21752416 ~ 21762301 (+)
kif2c kif2c other downstream 710058 24859026 ~ 24871263 (+)
tnr tnr other downstream 1558859 25707827 ~ 25881110 (+)
LOC113539772 kiaa0040 other downstream 1748049 25897017 ~ 25902006 (+)
LOC117597118 LOC108261462,LOC108261092,LOC108261095 other downstream 2067096 26216064 ~ 26224038 (+)
G71385 NA other downstream 2079796 26228764 ~ 26229191 (+)

Expression


Co-expression Network