si:ch211-212k18.7 (LOC108267884)


Basic Information

Item Value
gene id si:ch211-212k18.7
gene name LOC108267884
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 19911733 ~ 19918428 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936859.2
TTGTGCAATTCCGGTCTCTAACGTGATCATCTGACTTCCTTGCTCCTAGTTTCGTTTCTGACAGTTGAGCAAAGGACGCAAAAGCTTCAAGTAGCGCATCTCCTTCTCTTCTACTCCGTAAAATACAACGAGGAGTTACTGTAAACGCAGTAGACTTTAGCACAAAAAGCAAGGGCAGAAATGAGGCACGGATCCGCGCGCGTGCTTGCGGCTGTCTTCCTGCTGGCGACAGCCCTCACTTTAGCTCAGGAAAATGACGGACACCTTAAGCCGCCTGCCAGCATGCTACCTCCTGCCCCGTTTGTCACCACATCTGCTCCAACCACCAGCACTCCAAATATGACAACTCCCCATACCAACATAACTACTGCTCCTCCAACTCCCCACAATACTACAACCGCCAACGTAACTACTGCTCCTCCAACTCCCCACAATACTACAACCGCCAAAGTAACCACTGCTCCTCCAACTCCCCACAATACTACAACAGCCAAAGTAACCACTGCTCCTCCAACTCCCCACAATACTACAACAGCCAACGTAACCACTGCTCCTCCAACTCCCCACAATACTACAACAGCCAACGTAACCACTGCTCCTCCAACTCCCCACAATACTACAACTGCAAACACAACCACCCCTAGTACTACTATAAAACCAACCCCAAAACCTGAACCAACGCCAGCAACCAACATCACAGTGGGCAACTACACtgtgaaagacaaagacaaactgTGCATTATGGTTCAGGCTGCAATCCAGGTCCACGTCAACAACAGTAAGATGGCAGGCACCTATATTGTTCCAGAAAGTGCTAAAGGTGATGGCAAATGTGAAAGCAATAAAGCCAGTCTCGTGATAACTTTCAAAGAGGGTTTCATCTCTATGAACTTCTTCAAGaatgacaccaCAAATATGGTCTTTGTCAGTGCTGTGGCTGTCAAACTGACCTATGCCTTCAAGTCTGGAGttttgtcaattttggagaGGACGAATCAATCGGTGCAACTGTTCAGCATGGCAACAAGTCACTCTTATTCCTGCAAATCAGAGTCAGTCTTCATGGGTGATGGCGCCTACCTGGAGTTCAGTAAGGAGAGGATGCAAGCCTTCAACTTTACCAGCAACCAGTTTGGTCCCCTTGACATGTGCAAGGCCAACCAGCCAGACTACCGAGTGGCCATTGGCGTGGGTGTGGTGCtgctcatcctcatcatcatcgtaGTCGTGGCTTATCTCATCAGTAGGAGAAGGAGAACAGATGGTTACCAGACTCTCTGATGGAGAGAATCCGTCAGAGCAGTTCATAAAAGGacagcatcatcaccatcaccatcatctgcGCAAGTTAAATCAAGCATGATACGCTTACATGAGTTTATGAAGCAGACCTTGCTTTTGGATTTGTTCTGGTGAGGTTTGCTCCATAAAAAAACTGACATTTAATCCAGGCATCAGCAACtgctccttttatagggtgcacAATACAACAACTAAAGGTGTGAAATCAAAAGAGATCACAAATGCATATTGTAatgctagtttaaaaaatacatcaaatcttagtttcattttccACGTTGTTGTGTGTTCAAACTGTTGTCCTGTGCTTGCTTCGCTGTGCTCAAGTGTCTTAAATCATATCTAGCTATGTCCAGCTGTTTGGTCAAGATGACACCCTATTTACACCACGGTGCCTCTACTAAAATATCTTAGACTTTAATCCAGTCGTTATGATTTCCACAATGACAGCTGGATCTCATAAACATTATAATCAGCAAGTGTGTAGTGCAGATCTCAAAAAACAGCTATTCATTCTGCCTATGGGGTAATATAACTGATTTTTATGTAAAACCCTTCCCCTTGCCCAAATTAGGTTCATCCTAGTTCAATGGCTCACCCTGTGAGAATATCAGAAGCAAATTACTTAAAATAATCTCATTAACCAGAAGAATTTTCAGTTAGTATTCTAATTTCTGTAGAAACATTATACTTTGTAGATTATACTTTGTGCCATTTTAAAGTGACCTATCCTCAGGAATATAGAGTCTCTAAATCCTATGCACTGATATTACAAGCATTAAGGTTATAAGGGAAGGTTTTGATATCTGCATGTACATTGCAAATGAGGTTTCCTGTCTTGATCAAAAGGATTTTAGGGATTTCtgctataataaaaaaagcattaGGTTGGACGGAGGggtcttgaaaaaaaattggagCAAAACTGACAGcaccttatttttaaatattaaaccgGATGATGATCTCTAGTTCTTTTTATTATATGCAAATTTAGCTTGAAGATGTTGCGCTTGTACTTTGTGTATGTAAAGCTGTCTGGTTGAAATTTTTCCAACAGTTGGTGATGTATCTCTGAAAAGATACTTTGAGAAAAAATAAAGGGAATATGTTGACTTTG

Function

NR:

description
macrosialin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936859.2 True 2422 mRNA 0.42 6 19911733 19918428

Neighbor

gene id symbol gene type direction distance location
LOC113540446 NA coding downstream 674 19901414 ~ 19911059 (-)
zdhhc21 zdhhc21,LOC107677703,LOC107691467,LOC107743939,LOC107739372 coding downstream 47682 19847582 ~ 19864051 (-)
LOC113540206 nfib coding downstream 75775 19748276 ~ 19835958 (-)
LOC113540494 ppp3ca,LOC106958666,LOC107084148,LOC106922390 coding downstream 279820 19543744 ~ 19631913 (-)
LOC117597194 NA coding downstream 375662 19523380 ~ 19536071 (-)
amdhd1 amdhd1,LOC107683519,LOC107738078 coding upstream 34737 19953165 ~ 19957947 (-)
ndufs2 ndufs2,LOC107679282,LOC102781006 coding upstream 214331 20132759 ~ 20143530 (-)
LOC113540737 NA coding upstream 225356 20143784 ~ 20143889 (-)
focad focad,LOC101469292 coding upstream 247283 20165711 ~ 20223868 (-)
LOC117597004 NA coding upstream 495497 20413925 ~ 20419029 (-)
G67562 NA non-coding downstream 80983 19830550 ~ 19830750 (-)
G67535 NA non-coding downstream 86814 19769357 ~ 19824919 (-)
G67556 NA non-coding downstream 123185 19787961 ~ 19788548 (-)
G67527 NA non-coding downstream 255291 19605492 ~ 19656442 (-)
G67719 NA non-coding upstream 147635 20066063 ~ 20067059 (-)
G67757 kirrel,kirrela,LOC108440115 non-coding upstream 209198 20127626 ~ 20132037 (-)
G67891 NA non-coding upstream 378894 20297322 ~ 20327561 (-)
G68075 mta2,LOC107597904,LOC107660724,LOC107709145 non-coding upstream 640950 20559378 ~ 20566758 (-)
G68080 NA non-coding upstream 651971 20570399 ~ 20570930 (-)
G67587 NA other downstream 23007 19888179 ~ 19888726 (-)
zgc:112271 bola2,LOC105907194,LOC108436240,LOC105020731,LOC107569065,LOC106511278 other downstream 30093 19879968 ~ 19881640 (-)
LOC113540242 adamtsl1 other downstream 756512 19050150 ~ 19155221 (-)
map11 c7h7orf43,cunh7orf43,si:dkey-3k24.5,LOC107687048,LOC107594676,LOC107754664,LOC107561780,LOC105895567 other downstream 2071818 17792226 ~ 17839915 (-)
G66281 NA other downstream 2276865 17593748 ~ 17634868 (-)
LOC113539792 LOC108267751,LOC108440128 other upstream 1052 19919480 ~ 19943834 (-)
snrpf snrpf,LOC106609479,LOC107738052 other upstream 44154 19962582 ~ 19965851 (-)
znf16l LOC108268318 other upstream 860110 20778538 ~ 20825520 (-)
chchd7 chchd7 other upstream 1386264 21304692 ~ 21313897 (-)
G68462 NA other upstream 1407618 21326046 ~ 21329250 (-)

Expression


Co-expression Network