rnf182 (rnf182)


Basic Information

Item Value
gene id rnf182
gene name rnf182
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 23345058 ~ 23349627 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936872.2
TATGTTAACAGTATGTACACAAATgaaatttcttaaataaatatgatgaatACAGAAGCACTGAATATACTGTCGTCATGGCACAGTGCTTGCATTCAGCCCATGATAGACTAAAGATATATTCAGGTGAGGCTTTCCATCCAAAGCCTCTCTCCCCAGCCTTCCACACAGAGCATGAAACTCTCCCTACATCAAACTCCCAGTTTTGCATGTGACCCTGAGTTGGTAAAAGTTTTGGTGCAGCTTGTCTGTCTGGTATCCAGTTGTGGCATAGTAGCTACCTTGAGACCATGTTCCCAAGCCTCTTCTTCTATTATGATAAGCCGATGCAAGAGCGCTGAGACCAGCAAGAGATGATGGGTCAACAACCAGAGGAAGTGGTGGATGGTTTGAGCACTGAGGAGCTGGAGTGTAAGATCTGCTATTGTGCTTATAATCTGTCCAGTCGGCGACCCAAAGTGCTCGAGTGCTGCCATCGTTTGTGCTCCAAATGCCTGGCAAAAATTCTCAATCTGGGTGAGTCACCCCCAAACTCAGTGGTCTGCCCTTTCTGCCGCTACGTTACTAGTCTTCCTGGAGAAGCTGGTGGCAGTCTACCGGATGACTACAACTTGATGACTGTGCTGTCCATCCAAAACCAATATCTGAATTTAAAGGGGAGCAAGGGTGAGATTTTGCTCAGCCCCGGACATCTAAATTCTCTGGTGGGTCACTCAGCATCGGCATCGCCTTCATCCATATGCTCCAACTATGTGGTTATCACCATTATGGAGTCACTACAGGAGCGTGCCATTTCAGCAGATCACCGCTCCTCCAGCCTGGACTCTATGGCCTCAGTGACGCGACGCTGCACACTGTGGAACTGTACCACGCTGCTGTGCCAGGCATCAGCCCGAATTCTGGTGTGGATCCTGGGGCTGTTGTACTTCAGCTCTCTGCCAACAGGTGTCTACTTACTCATCATGCAGAAAACCACTCTGGGAGTTCTGCTGATCAGCCTAGTGCCTGTCAGTCTACTCATGATCATGGTGTATGGGATGTGCCGGTGTGTGTTCCATGAGTTTTGGGACTGTATGCCACCTTAA

Function

symbol description
rnf182 Predicted to enable metal ion binding activity and transferase activity. Predicted to be involved in protein ubiquitination. Predicted to be located in cytoplasm and membrane. Predicted to be integral component of membrane. Orthologous to human RNF182 (ring finger protein 182).

NR:

description
E3 ubiquitin-protein ligase RNF182

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11983 RNF182; E3 ubiquitin-protein ligase RNF182

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936872.2 True 1085 mRNA 0.48 2 23345058 23349627

Neighbor

gene id symbol gene type direction distance location
ackr4a LOC108267630 coding upstream 68257 23273523 ~ 23276801 (+)
si:ch211-106h4.6 LOC108267631 coding upstream 114605 23215075 ~ 23230453 (+)
si:ch211-106h4.4 NA coding upstream 130867 23181870 ~ 23214191 (+)
cacnb2b cacnb2b,LOC108267179,LOC107713974,LOC107686054 coding upstream 200972 23124180 ~ 23144086 (+)
si:dkey-32m20.1 LOC108267269 coding upstream 235355 23105623 ~ 23109703 (+)
ranbp9 ranbp9,LOC107556766,LOC107664064 coding downstream 4342 23353969 ~ 23376185 (+)
epdr1 LOC108267170,LOC107664036,LOC107558964,LOC108437243,LOC107713986 coding downstream 37382 23387009 ~ 23391001 (+)
stard3nl stard3nl,LOC107713985 coding downstream 43031 23392658 ~ 23401730 (+)
otulinb LOC108268091 coding downstream 245334 23594961 ~ 23608201 (+)
ankhb ankh,ankhb,LOC108437249,LOC107657429,LOC107713990 coding downstream 264813 23614440 ~ 23641469 (+)
G69514 NA non-coding upstream 13529 23331033 ~ 23331529 (+)
G69449 NA non-coding upstream 53060 23291410 ~ 23291998 (+)
G69443 NA non-coding upstream 60132 23284554 ~ 23284926 (+)
G69294 NA non-coding upstream 340956 23001998 ~ 23004102 (+)
LOC113540593 NA non-coding upstream 406317 22926810 ~ 22938741 (+)
G69522 NA non-coding downstream 18034 23367661 ~ 23368677 (+)
G69570 NA non-coding downstream 97836 23447463 ~ 23457206 (+)
G69641 NA non-coding downstream 261326 23610953 ~ 23611157 (+)
LOC117597085 NA non-coding downstream 305295 23654922 ~ 23767863 (+)
G69722 NA non-coding downstream 408757 23758384 ~ 23774271 (+)
G69509 LOC108267411 other upstream 24715 23318504 ~ 23320343 (+)
LOC113540463 NA other upstream 692611 22649810 ~ 22652447 (+)
LOC113540377 NA other upstream 1582757 21752416 ~ 21762301 (+)
mettl4 mettl4 other upstream 1704901 21629076 ~ 21640157 (+)
plag1 plag1,LOC107570635 other upstream 2021091 21314218 ~ 21323967 (+)
klhl18 klhl18,LOC107657445,LOC107701005,LOC107733883,LOC107730797 other downstream 678479 24028106 ~ 24106223 (+)
G69971 NA other downstream 759168 24108795 ~ 24109889 (+)
kif2c kif2c other downstream 1509399 24859026 ~ 24871263 (+)
tnr tnr other downstream 2358200 25707827 ~ 25881110 (+)
LOC113539772 kiaa0040 other downstream 2547390 25897017 ~ 25902006 (+)

Expression


Co-expression Network