zte38 (LOC108267617,LOC108430736)


Basic Information

Item Value
gene id zte38
gene name LOC108267617,LOC108430736
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28699669 ~ 28706523 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936878.2
TTCGCGCGAGCGTTCATGAGCTCCTCTAACGGACACTGTGTTAGCTTAAATGCTAACTGTCTCCCCTCAGCAGACTGGGGTGTCGTTTATTACGAATTAAACACCTTAAAAtagatatttaaacattttaattcaagcaagtagttatttaatttagcaagaaataaaagaatttgtCATATTTAACTGTGAGGAGATGGCAACCGTACTGAAAAAGCGAGGGAAAGCAAAGCAGGAGACTGCTGAGtgggACAGCTTATTCCATCAGGAGCTGAGAAGCCAGGAGCAGTCGTTGGTGTTTGTTAAGCGAATGCTGGTCCTGGCGGTGTCCTCTATAACCTACCTGCGTGGGATCTTTCCAGAAGACGCGTATCGATCCCGCTACTTAGAAGATTTATGCATCAAAGTTCTTAAAGAGGACTGCACTTCTCCAGGAGCCTGCAAAATTGTCAAGTGGTTGATCGGCTGTTTTGATGCTTTGGAGAAGAGATACCTGCAAATTGTGCTTATTGGGGTGCACAGAGACCCGGATGACACTAATCATGTCATAGAGTCTTACCAGTTCAAGTTCAAATACACAGACCATGGGCCTCAGATGGACATCCTCAGAAATGAGAACATTGAGATGAGGGTGACCATGGAGGACACAAAGAAGGCCTCGGTTCTGCTGATCAGGAAGCTTTTTCTCCTCATGCAGAACCTGGACGCTCTGCCAGATGATGTCTATCTCACCATGAAGCTCTACTATTACGATGATGTGACCCCATCAGACTACGAGCCACCGGGCTTTAAGGAGGGAGTGTGCGACAGCCTGTGGTTCGAGGGCACAGCGGTGCACTTCAGAGTGGGAGACCTCCAGACTCCCTTCCACGTGCTGAAGGTTGGAGTGGCAGCCGAACAGGGCCGCGTGAGTAAACTGCAGGAGGGCAACCACCTGAGAGAAAGCGTCCAGGACTCCATGCAGGAGGTGCCTGGACAGCGCAGGGAGGAGGATCTGCCATCTGAGGATGAGTCGGCTGCGCAGTTCAAGCAACCCACAAAAGCCCCAGTGAAGAGAGGAGGCAACAAACTGACaaagagaaggaagaaagaaatttaaaagcTCTCCATAGGAGTTTGTTAGGACTGAGGTCGTATGTTTGCAGTACGTATACCCACGTGTTTATTTGTGCCTTAATTTTATGACAGTATGCTGGAGGGAAACACTGAATTATTTAACAGTTGTAACTTCTTAAGTTTTGTTGTTCAAATGTTATTGATCTTCCTGATGATGCCCTTTCAAAGATTGtaattcaataaaaatatagaaagagaaagaaa

Function

NR:

description
HORMA domain-containing protein 1-like isoform X2

GO: NA

KEGG:

id description
K12778 HORMAD, HOP1; meiosis-specific protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936878.2 True 1320 mRNA 0.46 12 28699669 28706523

Neighbor

gene id symbol gene type direction distance location
uck2b uck2b,uck2,LOC108267616,LOC108430692,LOC104935075,LOC103363741 coding downstream 9657 28686556 ~ 28690012 (-)
czib c7h1orf123,cunh1orf123,si:ch211-284b7.3,LOC103022465,LOC107681739,LOC107719286,LOC107671679,LOC107722617 coding downstream 14093 28682472 ~ 28685576 (-)
scp2a scp2,scp2a coding downstream 18965 28668979 ~ 28680704 (-)
dcaf8 dcaf8 coding downstream 57274 28632754 ~ 28642395 (-)
LOC113540232 LOC108267757,LOC108430781,LOC107591375,LOC107668940 coding downstream 71526 28619816 ~ 28628143 (-)
prdx1 LOC108267618,LOC108430734,LOC105891340,LOC103023705,LOC107577377,LOC107560788 coding upstream 1506 28708029 ~ 28711708 (-)
si:ch73-182a11.2 LOC108268045 coding upstream 16327 28722850 ~ 28736753 (-)
LOC113540626 rec8 coding upstream 39107 28745630 ~ 28756644 (-)
arl14 LOC108267661 coding upstream 55571 28762094 ~ 28763277 (-)
ppm1la ppm1la,ppm1l,LOC108267660,LOC108430727,LOC107560765,LOC107722109,LOC107681725,LOC107701333 coding upstream 56781 28763304 ~ 28785755 (-)
G72796 NA non-coding downstream 31026 28667323 ~ 28668643 (-)
G72726 NA non-coding downstream 227898 28397661 ~ 28471771 (-)
G72709 NA non-coding downstream 316209 28343134 ~ 28383460 (-)
G72720 NA non-coding downstream 320537 28365657 ~ 28379132 (-)
G72665 NA non-coding downstream 559231 28138866 ~ 28140438 (-)
LOC117597077 NA non-coding upstream 6511 28713034 ~ 28717955 (-)
G72824 otol1a,LOC108267659,LOC103045957,LOC108430690,LOC107701323,LOC107560771,LOC107593893,LOC107722646,LOC105899147 non-coding upstream 76400 28782923 ~ 28784140 (-)
G72893 NA non-coding upstream 125861 28832384 ~ 28833720 (-)
LOC117597038 NA non-coding upstream 185493 28892016 ~ 28896799 (-)
LOC113540203 NA non-coding upstream 234139 28940662 ~ 29029191 (-)
LOC113540437 fam159a other downstream 47244 28648324 ~ 28652425 (-)
trnas-uga_2 NA other downstream 462864 28236724 ~ 28236805 (-)
trnas-uga_1 NA other downstream 463402 28236186 ~ 28236267 (-)
LOC117597043 NA other downstream 474066 28197991 ~ 28225603 (-)
prkag2b LOC108267467,LOC108430764,LOC108434244 other downstream 657884 28016064 ~ 28041785 (-)
LOC117597168 NA other upstream 81091 28787614 ~ 28791829 (-)
LOC117597037 dnajb4,LOC107566472,LOC107681825,LOC107599850,LOC107690981,LOC107751861,LOC108430719 other upstream 167055 28873578 ~ 28884965 (-)
usp33 usp33,LOC106569751,LOC107708728,LOC107751869 other upstream 442115 29148638 ~ 29171921 (-)
LOC113540665 LOC108267691,LOC108437516,LOC107715522,LOC107681815,LOC105889505 other upstream 857698 29564221 ~ 29575727 (-)
zgc:110366 LOC108267892,LOC108437513 other upstream 1018065 29724588 ~ 29730857 (-)

Expression


Co-expression Network