cacnb2b (cacnb2b,LOC108267179,LOC107713974,LOC107686054)


Basic Information

Item Value
gene id cacnb2b
gene name cacnb2b,LOC108267179,LOC107713974,LOC107686054
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 23124180 ~ 23144086 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936910.2
ACACCTCATGTAGGGataatttgttttatatgtttcaaaatttcaaaaccTTACTTTGGGTGAATCAGGCTTAGAGTCGACTTCTGGAGTTCAGGTCATAGAAGGATGCAGGGAGAAAGCAACAGATGCCACGCTCGAGAAATAAGCCCTCAAAGCCGCTGAGTCCCCcaccccccaaacacacacacacacacacacacacaggcagagttTGAGATGCGCTCAAGCCTTCGGTGTTGCCGGGCACACGTTCcatttgttcagtttttgttttctatttttttgcatttgtgatACAGCAGGAGGAAGCAATGATCACCAAACACAGGAAGCGAGTCTTGCTTTAGCATGCACATTTAAGAAATTGGTCGTTCTAGAAAGGAATGGATTAAAGGGGCTCTCATGTACTTTCCTGGGTGAGAGTGCAAATAGTTTACTTGTGCAGTAGTTGTGGAGGGACAAGCAACAAACAAGGTGTAGTCAGTATGCCACCCAAGAAAAAGGGTTCGGTGGACCGTCTGGACTCAGGGGCCActgaggagaaggagaagaatgCTCAGGTCCAGCTGGAGAAGGCCAAGTCTAAACCTGTTGCGTTTGCTGTACGCACAAACTACACCTACACCCCTGCCGATGATGACAATGTTCCTATCCCAGGACATGGAGTTGCCTTTGAGGCTAAAGACTTCCTACATGTCAAAGAGAAATTCAATAATGACTGGTGGATCGGGCGGCTGGTGAAAGAAGGTGGGGAAGTGGGTTTCATCCCCAGCCCAGTCAATCTGGAGACTATTCTCATTCGGAGAGAGGTGCAAGCCAGGAAGGCCGCCAAAGCTCTAGCCAACAAAGCAGCAAGCTCTGCCAAAGATGATATGAACTCGAAGAAAGTCACTCCTCCTCCATCAGTTCAGCAAGTGAAGAAGAAATCAGGGGAACAACTGGCAGCATATGACGTTGTGCCTTCCATGCGTCCTGTCGTGCTGATGGGGCCTTCACTCAAAGGTTACGAGGTTACAGACATGATGCAGAAGGCCctctttgattttttaaaacatagatTTGAAGGAAGAATAACCATCACTCGAGTGATGGCAGACATTGCTCTTGCTAAGCGGTCAATCCTAAACAACCCCAGCAAACATGCTATAATGGATCGCTCCAACACACGCTCTAGCCTTGATGCCGCTGCTCAGATCCAAGGGGAGATTGAGAGGATCTTTGAGCTTGCGCGTAGCCTGCAGCTGGTGGTTCTGGATGCAGACACTATAAACCACCCGCTCCAACTCAGCAAGACCTCCCTGGCCCCAATTCTCGTCTATGTCAAGATCTCCGCTCCCAAGGTTCTTGCCAGGTTGATAAAGAGCAGAGGAAAGTCCCAGACCAAACACCTCAATGTTCAGATGGTGGCTGCAGATAAACTTGCCCAGTGTCCCAATGAGCTCTTTGATGTCATCTTAGATGAGAACCAGCTGTCAGATGCCTGTGAGCACATAGCTGACTACCTGGAGTCTTACTGGAGAGCCACTCACCCCCCAGAGATGGAGATAGCCAAATCTGCCCTGGTGCCCACAGAGAGCACACTCCCCAGCAGCCCCACACCTGCTAAGGACGAATCGAAAAGCAAGAGGATGATGGCTTCTAAGAGGAAGGTATCTCTGGAGAACCAACTGGAGCATCCCCAGAATGAGGAGCAGAAAGAGGATGAAAAAGTGGACGTGAGGGAGGAAGAGGCAGCTGAGGAGGAGCGGCTCCTGAAGAGCGAGCCAAAGAGACCCCAACATAGCCACCACAACcgtcatcaccaccatcaccatcaccaccgcACCAGCACAGACCACACCGAACAGCACAACCACCACCCTGCCCACTTACAAAACATGGACATAGATAATGTGGCCAGTAAGAACTCAGAGCCTCAGAGCCATCATCTGCtgctagaagaagaagaaggattGGACCAAACTGAGGCACACCCAACCCAGACTACAATCCAAAAAGACCAAAACCACCACCAccgccatcaccaccatcatcaccgcAAGACCACGGACATTCACAATGACTATGGACAGGACTATAAGCTGAAGCACAATCAGCGCAACAAGCAGCATAGTCATCAGAGACAGCTACGCCCATCTAATGAAGAGATGCTGCGCTCCCTTCATGATCAAACACTGCCTTTACACCAATATGAATCATCTGAACATGAACCGCACTACGACCTTGAACACCAATACCACTACCGTGGCCGTGAGCGAGACAGAGATAGGAACAAGGAGAGAGACAATGACAGACATGATGAGGCTGGAAACTGGAGCAGAGATATGTACATTCATTACTGACTGATGTGGATTTGCAGTGTGCTGATGCTGCTATGTGAAACATAGGTGTAATGCCAATACTTGTACTGTTCAAAGGTCTCACCAAGAGCATGCACAATGTAAAACTGCTGTATATGCTTAGAATATAGTTCTGCAGGTTacctaattatttttcaaatgtactggtattttaaaaacatttattacagctaattaatctaaatattttacatgGCAGTCTATTTAATTTTCTTACCCGAATGGTTTAACATTAAATACTGCTAAGGACAGTGCTTAGCAAGAACAATCAGTCAAGAACAAAGCGTCTTTTCACTtatatctacactatatggccaaaagtatgtggacacctgaccatcacacccacatgtgagCCTTCCCTAAACTGCtggcacaaagttggaagcacacaatagtctaggatgtctttgtatggtataacattacaatttcccttcactggaattaag

Function

symbol description
cacnb2b Predicted to enable high voltage-gated calcium channel activity. Predicted to be involved in chemical synaptic transmission; neuromuscular junction development; and regulation of voltage-gated calcium channel activity. Predicted to act upstream of or within calcium ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of voltage-gated calcium channel complex. Is expressed in several structures, including heart; integument; liver; nervous system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in Brugada syndrome 4; hypertension; and hypertrophic cardiomyopathy. Orthologous to human CACNB2 (calcium voltage-gated channel auxiliary subunit beta 2).

NR:

description
PREDICTED: voltage-dependent L-type calcium channel subunit beta-3-like isoform X2

GO:

id name namespace
GO:0070588 calcium ion transmembrane transport biological_process
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:0005245 voltage-gated calcium channel activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936910.2 True 2812 mRNA 0.47 15 23124180 23144086

Neighbor

gene id symbol gene type direction distance location
si:dkey-32m20.1 LOC108267269 coding upstream 14477 23105623 ~ 23109703 (+)
LOC113540574 stam,LOC108267818 coding upstream 20392 23054500 ~ 23103788 (+)
yes1 yes1,LOC108437224,LOC107713975,LOC107584194,LOC107686048 coding upstream 86026 22999911 ~ 23038154 (+)
lpin2 lpin2,lipin2,LOC108413408,LOC107686047 coding upstream 286341 22808862 ~ 22837839 (+)
myom1a LOC108268132,LOC108440660,LOC107664077,LOC107732591,LOC107556630 coding upstream 318246 22776639 ~ 22805934 (+)
si:ch211-106h4.4 NA coding downstream 37784 23181870 ~ 23214191 (+)
si:ch211-106h4.6 LOC108267631 coding downstream 70989 23215075 ~ 23230453 (+)
ackr4a LOC108267630 coding downstream 129437 23273523 ~ 23276801 (+)
rnf182 rnf182 coding downstream 200972 23345058 ~ 23349627 (+)
ranbp9 ranbp9,LOC107556766,LOC107664064 coding downstream 209883 23353969 ~ 23376185 (+)
G69294 NA non-coding upstream 120078 23001998 ~ 23004102 (+)
LOC113540593 NA non-coding upstream 185439 22926810 ~ 22938741 (+)
G68999 NA non-coding upstream 596624 22527328 ~ 22527556 (+)
G68954 scrib non-coding upstream 727079 22392839 ~ 22397101 (+)
G68955 NA non-coding upstream 736435 22383094 ~ 22387745 (+)
G69443 NA non-coding downstream 140468 23284554 ~ 23284926 (+)
G69449 NA non-coding downstream 147324 23291410 ~ 23291998 (+)
G69514 NA non-coding downstream 186947 23331033 ~ 23331529 (+)
G69522 NA non-coding downstream 223575 23367661 ~ 23368677 (+)
G69570 NA non-coding downstream 303377 23447463 ~ 23457206 (+)
LOC113540463 NA other upstream 471733 22649810 ~ 22652447 (+)
LOC113540377 NA other upstream 1361879 21752416 ~ 21762301 (+)
mettl4 mettl4 other upstream 1484023 21629076 ~ 21640157 (+)
plag1 plag1,LOC107570635 other upstream 1800213 21314218 ~ 21323967 (+)
G68232 LOC108267516 other upstream 2090427 21020258 ~ 21033753 (+)
G69509 LOC108267411 other downstream 174418 23318504 ~ 23320343 (+)
klhl18 klhl18,LOC107657445,LOC107701005,LOC107733883,LOC107730797 other downstream 884020 24028106 ~ 24106223 (+)
G69971 NA other downstream 964709 24108795 ~ 24109889 (+)
kif2c kif2c other downstream 1714940 24859026 ~ 24871263 (+)
tnr tnr other downstream 2563741 25707827 ~ 25881110 (+)

Expression


Co-expression Network