LOC113540421 (LOC108267573)


Basic Information

Item Value
gene id LOC113540421
gene name LOC108267573
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 21235253 ~ 21248637 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936917.2
ACACAAGCGCCCCCTAGAGTTAGCAGGACTGATCCCGAAGTGAGGAAACGCAGAAAGACAGGACAGAAGGAACAGCAGCGCTCAGAGGAGACACCGTGGGAGTGAAACACACAGTTGAGGAATGGCTACATGGATTCTCGGTGCCTGTTtctttgtgggtgtgtgtttcctgttatcTAGAGTTTGCTGGTCGAGGACGAGGCGAGCAAAAGAACCTCCACTGGTGAAAGGATGGCCTTTTTTTGGTGTAATTCTGGACTATGGTAAAAACCCATTGGGCTTCCTGCAAGCAGCTCAACAAAAGTATGGAGACATCTTTACATGCCAACTTGCGGGGAAGTACTTCACCTTCATCACGGATCCTTTCTCCTTCTCCGTGGTGATGCGCCAGGGCAAAAACCTCGACTTTCACAAATTCGCTATGGGTTTCTCTCAGCGGGTGTTTGGTCATGCTGATTTTACATCACCGCTGTTCAGCGAAAGCTACCGAGAAGTGCACTCACTCTTCAGACAAACACTACAAGGTCCACCTCTTCAGCAACTCAGCCAGAACATGCTTAGGAATCTGCAGACTGCTTTCCAACACTGCCTGCCAAGTGAGAATGGCTGGAAAGAGGAGGGTTTACAGTGTTTCACCACGCGCATCATGTTTGATGCTGGATTCGTCACTCTTTTTGGTAAGAAGGCAGGGCTCCTTCAGCCAGAAGAAACAGGAGCTGTTGGGACATGCATGCAGAAGGTGAAGCGGGATTTCTTGGCATTTGATGGGGCTTTTCCTGCACTGGCGGCTGGCGTGCCTATTGCGCTGTGCAGACGCGCATGGAGAGCGAGAGAAGCATTAGCTAAGGGACTGCTGCACGGGGAGCTTTATCACAGGATGTGCATCTCGGATCTGATTCAGCGCAGGATGGACGCCTTCGATCGCATGCACCTGGATGAGACAGGAAAAGCACGCACACACGTCTGCATGCTCTGGGCTTCACAGGCCAACACACTGCCCGCTGCCTTTTGGAGTCTCTACTATACACTGAGAACTCCAGAAGCTTTTGTTGTGGCTTGTAAAGAGGTCGACCTAATCATGGCACAGATACCAAATGACAAACCAATCAGCCTGTCCAAAGAGCAGCTGGAATCCATGACTGTGCTTGAGAGTATTATCAAGGAAGCTCTACGCCTGTCAAGTGCTTCCATTATGATCCGAGTTGCAAGTGATGACTTCATTCTGACACTGGACTCGGGTCAAGAGGCAGCTATTCGAAAAGGAGATTACATTGCTCTCTACCCCCGACTCATACACCTAGACCCTGACATCTACCCGAACCCATTGGAGTTCAAGTACGACCGATTTTTGGATGAAGAGGGTCAAAGACAGAGCCAGTTCTTCAAAAATGGCCGACAGCTGAAACACTACCTTGTGCCATTTGGTTCTGGTGCCAGTGAGTGTCCGGGTCGTTTCTTCGCCATGAATGAGATAAAGCAATTTCTCATGCTGGCGCTCTGGCACTATGACTTACAACTCAGTGAGCCTGATGTCACGCTGTCACCAGATCGTACCCGTGCCGGCCTTGGCATCCTGCCTCCTTCACGAGATGTACTGCTTAGATACAAAGCAAGAGCAGACAGGTACACAGAGAGATCCTGGGAGAAAAATGCTAATGATTAATATGTCagttgaaaaacaaaacataccaTGTGTTAAACCAAAACCTAAAAGAGCATTCATTCAGATTTCTTAGTATACTTCTTGATGCAATGTGGCCTCTTTATTAGGTACATCTACTCTAAGGCTATGCATAGCAAGCTTTTACTATTGCTTTAGCGCTGTACTAAAGCATACtgggtttgaaatgaagcaatggcTCTGAGGTTAAAGTGAagaatatcatatttatttggAAGGTATTTTCCTCTATTGCATAAACCACAGAGGAATTGCATTTTATGCATATGGAAAAAGTAACtaaattttaagtaaaattgTCATACTGCAAATCTATTAACTGGACCCTATACTCTATAAACAGAACAGTATGCTCCCTGGTGATGTTCTGCCAGGCCCGTAGCCTTTTTTCAGTCCCTGCTATGCTTAGGGGCTTTTTGACATTCCTTTTATACAAGTTAATCATTCTCTCTTCAACTATagtataaaaatatgtttattaggTACAACTAGAGTAGCTGTACTTAATGAAGTGTCTACTGAGTGTACATTGAATTGTTTCTTTAataatgtgtgaatgtatgGATGTTTGTCAGCTTTCACatgcaaatttattttttctgtatttagaAATGCTTGCCCTTTATTGATTGTGCATATACTCTATAGTATCAATTTGCAGTATTAATGTACaccatgtgtgtttgtaagaCTGAAAAATTACTGATAGTGTGTAAAGGACTGGTTGGATTAAAGAAATTGCATGTCTGCTGGTGGaatgtaaaagttaaaaaacatttactgaaaatCAGAGTGTATACTTAAATGGGAATCAAGGGTGCAGTAGCATTACTTCTACTTTTATTGtcgtctgctttttttttttcttttattgggTCCTTATTATTCCACCATGTGAACTATTGAATTTATGTGAAAGAATGATGTCAAATGATCGTCATGCTGATTAAGTGGATATTTGtatgtcatatttatttcacaaataaataaactcatatatttcaaattta
>XM_026936918.2
AAGAAACATAGCTTCCACTCAGGCTTAAAGAGATAAGACCTGTATAAAATGGGTATTTCATTTCAGCTTATTTCACAGCCAGGGGCAGCACACCGGATGCAATAATGCCCCTCTTACAGTGAGTGGGAGGGGCTCGTAGAGGGTTAAAAAGAGCCAGATGGGACAGAAGGAAAAGGAGCAAACAGAGAAGAGAAAGTGGGAGTAAATGCACAGAGCTTAGGCATGGCTACGTGGATTCTTGTTGCCTTTCTCGCCATTGGTGTGTCGTTCCTGTTATTGAGAGCCTTTGGGTCTAGGACAAGGCGAGCAAAAGAACCTCCACTGGTGAAAGGATGGCCTTTTTTTGGTGTAATTCTGGACTATGGTAAAAACCCATTGGGCTTCCTGCAAGCAGCTCAACAAAAGTATGGAGACATCTTTACATGCCAACTTGCGGGGAAGTACTTCACCTTCATCACGGATCCTTTCTCCTTCTCCGTGGTGATGCGCCAGGGCAAAAACCTCGACTTTCACAAATTCGCTATGGGTTTCTCTCAGCGGGTGTTTGGTCATGCTGATTTTACATCACCGCTGTTCAGCGAAAGCTACCGAGAAGTGCACTCACTCTTCAGACAAACACTACAAGGTCCACCTCTTCAGCAACTCAGCCAGAACATGCTTAGGAATCTGCAGACTGCTTTCCAACACTGCCTGCCAAGTGAGAATGGCTGGAAAGAGGAGGGTTTACAGTGTTTCACCACGCGCATCATGTTTGATGCTGGATTCGTCACTCTTTTTGGTAAGAAGGCAGGGCTCCTTCAGCCAGAAGAAACAGGAGCTGTTGGGACATGCATGCAGAAGGTGAAGCGGGATTTCTTGGCATTTGATGGGGCTTTTCCTGCACTGGCGGCTGGCGTGCCTATTGCGCTGTGCAGACGCGCATGGAGAGCGAGAGAAGCATTAGCTAAGGGACTGCTGCACGGGGAGCTTTATCACAGGATGTGCATCTCGGATCTGATTCAGCGCAGGATGGACGCCTTCGATCGCATGCACCTGGATGAGACAGGAAAAGCACGCACACACGTCTGCATGCTCTGGGCTTCACAGGCCAACACACTGCCCGCTGCCTTTTGGAGTCTCTACTATACACTGAGAACTCCAGAAGCTTTTGTTGTGGCTTGTAAAGAGGTCGACCTAATCATGGCACAGATACCAAATGACAAACCAATCAGCCTGTCCAAAGAGCAGCTGGAATCCATGACTGTGCTTGAGAGTATTATCAAGGAAGCTCTACGCCTGTCAAGTGCTTCCATTATGATCCGAGTTGCAAGTGATGACTTCATTCTGACACTGGACTCGGGTCAAGAGGCAGCTATTCGAAAAGGAGATTACATTGCTCTCTACCCCCGACTCATACACCTAGACCCTGACATCTACCCGAACCCATTGGAGTTCAAGTACGACCGATTTTTGGATGAAGAGGGTCAAAGACAGAGCCAGTTCTTCAAAAATGGCCGACAGCTGAAACACTACCTTGTGCCATTTGGTTCTGGTGCCAGTGAGTGTCCGGGTCGTTTCTTCGCCATGAATGAGATAAAGCAATTTCTCATGCTGGCGCTCTGGCACTATGACTTACAACTCAGTGAGCCTGATGTCACGCTGTCACCAGATCGTACCCGTGCCGGCCTTGGCATCCTGCCTCCTTCACGAGATGTACTGCTTAGATACAAAGCAAGAGCAGACAGGTACACAGAGAGATCCTGGGAGAAAAATGCTAATGATTAATATGTCagttgaaaaacaaaacataccaTGTGTTAAACCAAAACCTAAAAGAGCATTCATTCAGATTTCTTAGTATACTTCTTGATGCAATGTGGCCTCTTTATTAGGTACATCTACTCTAAGGCTATGCATAGCAAGCTTTTACTATTGCTTTAGCGCTGTACTAAAGCATACtgggtttgaaatgaagcaatggcTCTGAGGTTAAAGTGAagaatatcatatttatttggAAGGTATTTTCCTCTATTGCATAAACCACAGAGGAATTGCATTTTATGCATATGGAAAAAGTAACtaaattttaagtaaaattgTCATACTGCAAATCTATTAACTGGACCCTATACTCTATAAACAGAACAGTATGCTCCCTGGTGATGTTCTGCCAGGCCCGTAGCCTTTTTTCAGTCCCTGCTATGCTTAGGGGCTTTTTGACATTCCTTTTATACAAGTTAATCATTCTCTCTTCAACTATagtataaaaatatgtttattaggTACAACTAGAGTAGCTGTACTTAATGAAGTGTCTACTGAGTGTACATTGAATTGTTTCTTTAataatgtgtgaatgtatgGATGTTTGTCAGCTTTCACatgcaaatttattttttctgtatttagaAATGCTTGCCCTTTATTGATTGTGCATATACTCTATAGTATCAATTTGCAGTATTAATGTACaccatgtgtgtttgtaagaCTGAAAAATTACTGATAGTGTGTAAAGGACTGGTTGGATTAAAGAAATTGCATGTCTGCTGGTGGaatgtaaaagttaaaaaacatttactgaaaatCAGAGTGTATACTTAAATGGGAATCAAGGGTGCAGTAGCATTACTTCTACTTTTATTGtcgtctgctttttttttttcttttattgggTCCTTATTATTCCACCATGTGAACTATTGAATTTATGTGAAAGAATGATGTCAAATGATCGTCATGCTGATTAAGTGGATATTTGtatgtcatatttatttcacaaataaataaactcatatatttcaaattta

Function

NR:

description
PREDICTED: cholesterol 7-alpha-monooxygenase-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936917.2 False 2691 mRNA 0.43 6 21235253 21248637
XM_026936918.2 True 2792 mRNA 0.43 6 21235253 21243505

Neighbor

gene id symbol gene type direction distance location
sdcbp sdcbp,LOC107660837,LOC107730132 coding downstream 1568 21227985 ~ 21233685 (-)
unm_hu7910 asph,unm_hu7910,LOC107730121,LOC107698672,LOC108436147 coding downstream 9269 21195948 ~ 21225984 (-)
nsmaf nsmaf coding downstream 46475 21168890 ~ 21188778 (-)
ank2b ank2,LOC103361685,LOC108436150,LOC108267515 coding downstream 74479 21012252 ~ 21160774 (-)
mad2l1 mad2l1,LOC107730133,LOC107698665,LOC107680902,LOC107732594 coding downstream 336161 20895441 ~ 20899092 (-)
LOC113540120 LOC108267808 coding upstream 88471 21337108 ~ 21350811 (-)
sox17 LOC108267806 coding upstream 127758 21376395 ~ 21379959 (-)
sox32 LOC108267240,LOC100698545 coding upstream 150918 21399555 ~ 21401268 (-)
mrpl15 mrpl15 coding upstream 165224 21413861 ~ 21417828 (-)
trnaa-ugc NA coding upstream 169531 21418168 ~ 21418239 (-)
G68186 NA non-coding downstream 431149 20803417 ~ 20804104 (-)
G68108 NA non-coding downstream 599054 20635904 ~ 20636199 (-)
G68107 NA non-coding downstream 599460 20635532 ~ 20635793 (-)
G68106 NA non-coding downstream 603543 20630166 ~ 20631710 (-)
G68080 NA non-coding downstream 664323 20570399 ~ 20570930 (-)
G68466 plag1 non-coding upstream 72181 21320818 ~ 21321146 (-)
G68495 NA non-coding upstream 158474 21407111 ~ 21408207 (-)
G68519 NA non-coding upstream 222995 21471632 ~ 21471839 (-)
G68520 NA non-coding upstream 224182 21472819 ~ 21473032 (-)
G68577 NA non-coding upstream 225950 21474587 ~ 21475776 (-)
znf16l LOC108268318 other downstream 409733 20778538 ~ 20825520 (-)
snrpf snrpf,LOC106609479,LOC107738052 other downstream 1269402 19962582 ~ 19965851 (-)
LOC113539792 LOC108267751,LOC108440128 other downstream 1291419 19919480 ~ 19943834 (-)
G67587 NA other downstream 1346527 19888179 ~ 19888726 (-)
zgc:112271 bola2,LOC105907194,LOC108436240,LOC105020731,LOC107569065,LOC106511278 other downstream 1353613 19879968 ~ 19881640 (-)
chchd7 chchd7 other upstream 56055 21304692 ~ 21313897 (-)
G68462 NA other upstream 77409 21326046 ~ 21329250 (-)
LOC113539989 LOC108436138 other upstream 105982 21354619 ~ 21371010 (-)
G68760 NA other upstream 685889 21934526 ~ 21935169 (-)
LOC113540019 LOC108268143 other upstream 1380978 22629615 ~ 22636088 (-)

Expression


Co-expression Network