chmp5a (chmp5,LOC108440659,LOC107732555,LOC107586329,LOC107664100,LOC107558945,LOC107686086,LOC107746917)


Basic Information

Item Value
gene id chmp5a
gene name chmp5,LOC108440659,LOC107732555,LOC107586329,LOC107664100,LOC107558945,LOC107686086,LOC107746917
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 22766263 ~ 22769071 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936922.2
CAAAGGAATCGGTTCCCTCGCGAGTCTCCCGGGCAGCTTTCAGCTTTGACCTGCAGCAGGATCAGGGTGTCGCTAACAGAAAAATGAACCGGCTTTTCGGTAGAAGCAGGAACCAGGCGCCTCCCGGCCTTTCGGATTGTATCGGAAATATCGATGCACGAGCCGAGGTGATGGAGAAGAAGATAGCGAGGATCGACGCCGAGCTCATCAAGTACAAGGACCAGATGAAAAAGATGAGGGACGGCCCGGCTAAGAATGCAGTGAAACAGAAGGCAATCAGAGTGCTCAAGCAGAAGAGGCTATATGAAAGCCAAAGAGATCAGCTTGCCCAGCAGTCCTTTAACATGGAACAGGCCAACTACACCATTCAGTCATTAAAGGACACCAAAACAACAGTTGAAGCTATGAAGATTGGagcaaaagaaatgaaaaaagccTATAAGCAAGTGAAGATGGATCAGATTGAAGACTTACAGGACCAGCTTGAGGACATGATGGAGGAAGCCAGTGAAGTGCAGGAGGCCCTGAGTCGCAGCTACGGTACACCAGACATTGATGAGGATGAACTAGAAGCAGAGCTGGATGCCCTCGGAGATGAGTTACTGCTGGACGATGACAGCTCTTATCTGGACGAAGCCTCGTCTGCACCCTCCATCCCAGAGGGCATGCCCAGTGACAGCAAAACAAATAAGGATGGTGTTCTGGTTGACGAGTTTGGGTTGCCGCAGATTCCAGCTACATAGACCGGGATGAACACTGCAGGATCTGTTTCATGACTGAAgattatttcagtatttttgtaCATGTGGCATTCAAGGGTAGTGTACCAAGGAAAGCTTACCTAATGAGTTAATGAAGCTTTTACTAAGCAAGCATGTGGCCTTGTAATTCTTTAGTtccattaatatattatttaagagtgtatatttttcacacattgacaaatatagaaaatagttttgccattatattataattattattattattattacaattattatttaatcatcatcatcattatcatcttCAGTAGCGGCAACAGCAGCAGCCGCATCCATATATATATTGTGACATTAGATCATTAATGAATAAAgcacaaaaatgtacaaatgaa

Function

symbol description
chmp5 Enables cadherin binding activity. Involved in several processes, including cellular response to muramyl dipeptide; midbody abscission; and regulation of cell cycle process. Located in cytosol.

NR:

description
PREDICTED: charged multivesicular body protein 5

GO:

id name namespace
GO:0015031 protein transport biological_process

KEGG:

id description
K12198 CHMP5, VPS60; charged multivesicular body protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936922.2 True 1117 mRNA 0.43 8 22766263 22769071

Neighbor

gene id symbol gene type direction distance location
oprk1 oprk1,LOC108268135,LOC107664042,LOC107732559,LOC108440658,LOC107586336,LOC107558938 coding upstream 8934 22749865 ~ 22757329 (+)
atp6v1h atp6v1h,LOC107664082,LOC107686042 coding upstream 28496 22702979 ~ 22737767 (+)
tcea1 tcea1 coding upstream 89063 22670489 ~ 22677200 (+)
si:dkey-94e7.2 si:dkey-94e7.2,LOC108268141,LOC108440665,LOC107686084,LOC107586344 coding upstream 119825 22641742 ~ 22646438 (+)
ankrd33bb LOC108268146 coding upstream 221676 22538818 ~ 22544587 (+)
bag1 bag1,LOC107746903,LOC106569734 coding downstream 1902 22770973 ~ 22774754 (+)
myom1a LOC108268132,LOC108440660,LOC107664077,LOC107732591,LOC107556630 coding downstream 7568 22776639 ~ 22805934 (+)
lpin2 lpin2,lipin2,LOC108413408,LOC107686047 coding downstream 39791 22808862 ~ 22837839 (+)
yes1 yes1,LOC108437224,LOC107713975,LOC107584194,LOC107686048 coding downstream 230840 22999911 ~ 23038154 (+)
LOC113540574 stam,LOC108267818 coding downstream 285429 23054500 ~ 23103788 (+)
G68999 NA non-coding upstream 238707 22527328 ~ 22527556 (+)
G68954 scrib non-coding upstream 369162 22392839 ~ 22397101 (+)
G68955 NA non-coding upstream 378518 22383094 ~ 22387745 (+)
G68947 NA non-coding upstream 521438 22244588 ~ 22244825 (+)
G68687 NA non-coding upstream 848487 21914806 ~ 21917776 (+)
LOC113540593 NA non-coding downstream 157739 22926810 ~ 22938741 (+)
G69294 NA non-coding downstream 232927 23001998 ~ 23004102 (+)
G69443 NA non-coding downstream 515483 23284554 ~ 23284926 (+)
G69449 NA non-coding downstream 522339 23291410 ~ 23291998 (+)
G69514 NA non-coding downstream 561962 23331033 ~ 23331529 (+)
LOC113540463 NA other upstream 113816 22649810 ~ 22652447 (+)
LOC113540377 NA other upstream 1003962 21752416 ~ 21762301 (+)
mettl4 mettl4 other upstream 1126106 21629076 ~ 21640157 (+)
plag1 plag1,LOC107570635 other upstream 1442296 21314218 ~ 21323967 (+)
G68232 LOC108267516 other upstream 1732510 21020258 ~ 21033753 (+)
G69509 LOC108267411 other downstream 549433 23318504 ~ 23320343 (+)
klhl18 klhl18,LOC107657445,LOC107701005,LOC107733883,LOC107730797 other downstream 1259035 24028106 ~ 24106223 (+)
G69971 NA other downstream 1339724 24108795 ~ 24109889 (+)
kif2c kif2c other downstream 2089955 24859026 ~ 24871263 (+)
tnr tnr other downstream 2938756 25707827 ~ 25881110 (+)

Expression


Co-expression Network