trmt10a (trmt10a,LOC107683564,LOC106608639)


Basic Information

Item Value
gene id trmt10a
gene name trmt10a,LOC107683564,LOC106608639
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 20307130 ~ 20314066 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936923.2
CCTCTAAATGTGACGTCCAGTCCCTCACAAACATGGCGCACAGCTGATGACGCTCTTTCAACACCGCCGGCGTTTTTAAATGACGTAGACACGAAGCATGCAGCCTGGTTGGAAATAAGGAATTAGCAGTGGCATCATGTCCTCTGATGCAGTCAGTGATTCCCGAGCTGATGAAAATGAGCAGGAGGTCCAAGGTGGAGGAAATGAAACACTgtcaaagagacagagaaagaaacttCTCAAACAACAGCAATGGGAAGAACAGAGAGATCTGCGCAAGCAGAAGCGCAAGGAGCGGAAACAGCAGAGGAAATTAGAAAAACAGGCGCAGGCTGAGGACAGAACAGACTGTCCTGACAGGAAGCGTTTTCGCAAAGAGGCAGAGCCCAGTCCTCTCCGTCTGGTCATAGACTGCAGCTTCGACAACCTCATGATGCTCAAGGATGTAAAGAAACTTCACAAGCAGATCCAGAGATGCTATGCAGAGAACAGACGAGCAGCACACCCAGTCCAGttttatataaCAAGCCATGGTGGGCAGTTGAAACAAAATATGGATGAAATTAACAAAGGCTGGGTCAACTGGAAGGATGTCCATATCAAGTCAGAGCATTTTCATGAAGTCTTAAGCAAAGAGGATCTGGTGTACCTCACCTCTgattcacccaacattctccaGGAGCTTGATGAGGCCAAAGCTTATGTGATTGGAGGACTGGTGGACCACAACCACCATAAAGGAATCTCTTTTAAACGGGCTAAAGAGCTTGGAATCGCTCATGCTCAACTTCCACTGGGCAGTTTTGTCAAGATGAACAGCCGCAAAGTGCTCGCCGTCAACCATGTGTTTGAGATCATGTTGGCATATCTGGAGAAACGTGACTGGCAGGAGGCCTTCTTCACCGTCCTGCCTCAGCGCAAAGGAGCTATACCTGTGGGCCAAGAGAACAAACAGGAGCAGGATGAGGACGAGGATGAGGAGGACTCCGATACATGTGAGCCAGGGACACAAAACAATGAAGATACAAAGGACCAAAGAAATGGCAAACAGGAAGAACATGAAACTCAGCAAAACCAGTCAGATTCATGTGAACGGACTGCTGTGTGAGAACAAATGactttttatgttaaaaatatttatcttttttttgtgccaaGACTTGGAATGACATGTGTTGGGAGAAGTTTCTGTTTTGCTTACTAATACCTAAGTTATTGATAATACTGCCATTTTTGTTTCAAGTCATAAAAGTGATTGAGATCTGAACATTTCTCTGCCAATAAAGTTGAGATTAGATCTCCTGCcaatttta
>XM_026936924.2
gtgtgaagttttttttaaatgttatatcgGAGTTTTTCATGAATTAGCAGTGGCATCATGTCCTCTGATGCAGTCAGTGATTCCCGAGCTGATGAAAATGAGCAGGAGGTCCAAGGTGGAGGAAATGAAACACTgtcaaagagacagagaaagaaacttCTCAAACAACAGCAATGGGAAGAACAGAGAGATCTGCGCAAGCAGAAGCGCAAGGAGCGGAAACAGCAGAGGAAATTAGAAAAACAGGCGCAGGCTGAGGACAGAACAGACTGTCCTGACAGGAAGCGTTTTCGCAAAGAGGCAGAGCCCAGTCCTCTCCGTCTGGTCATAGACTGCAGCTTCGACAACCTCATGATGCTCAAGGATGTAAAGAAACTTCACAAGCAGATCCAGAGATGCTATGCAGAGAACAGACGAGCAGCACACCCAGTCCAGttttatataaCAAGCCATGGTGGGCAGTTGAAACAAAATATGGATGAAATTAACAAAGGCTGGGTCAACTGGAAGGATGTCCATATCAAGTCAGAGCATTTTCATGAAGTCTTAAGCAAAGAGGATCTGGTGTACCTCACCTCTgattcacccaacattctccaGGAGCTTGATGAGGCCAAAGCTTATGTGATTGGAGGACTGGTGGACCACAACCACCATAAAGGAATCTCTTTTAAACGGGCTAAAGAGCTTGGAATCGCTCATGCTCAACTTCCACTGGGCAGTTTTGTCAAGATGAACAGCCGCAAAGTGCTCGCCGTCAACCATGTGTTTGAGATCATGTTGGCATATCTGGAGAAACGTGACTGGCAGGAGGCCTTCTTCACCGTCCTGCCTCAGCGCAAAGGAGCTATACCTGTGGGCCAAGAGAACAAACAGGAGCAGGATGAGGACGAGGATGAGGAGGACTCCGATACATGTGAGCCAGGGACACAAAACAATGAAGATACAAAGGACCAAAGAAATGGCAAACAGGAAGAACATGAAACTCAGCAAAACCAGTCAGATTCATGTGAACGGACTGCTGTGTGAGAACAAATGactttttatgttaaaaatatttatcttttttttgtgccaaGACTTGGAATGACATGTGTTGGGAGAAGTTTCTGTTTTGCTTACTAATACCTAAGTTATTGATAATACTGCCATTTTTGTTTCAAGTCATAAAAGTGATTGAGATCTGAACATTTCTCTGCCAATAAAGTTGAGATTAGATCTCCTGCcaatttta

Function

symbol description
trmt10a Predicted to enable tRNA (guanine(9)-N(1))-methyltransferase activity. Predicted to act upstream of or within methylation. Orthologous to human TRMT10A (tRNA methyltransferase 10A).

NR:

description
tRNA methyltransferase 10 homolog A-like

GO: NA

KEGG:

id description
K15445 TRMT10, TRM10, RG9MTD; tRNA (guanine9-N1)-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936923.2 True 1313 mRNA 0.45 8 20307130 20314066
XM_026936924.2 False 1234 mRNA 0.44 8 20307269 20314066

Neighbor

gene id symbol gene type direction distance location
c4h4orf54 LOC108268294 coding upstream 9984 20289797 ~ 20297146 (+)
mllt3 mllt3,LOC107683508 coding upstream 35899 20221888 ~ 20271231 (+)
hacd4 hacd4 coding upstream 140881 20159312 ~ 20166249 (+)
kirrel1a kirrel,kirrela,LOC108440115,LOC107731894,LOC107558429,LOC107679226 coding upstream 177666 20102481 ~ 20129464 (+)
trnar-ucu_2 NA coding upstream 206032 20101025 ~ 20101098 (+)
nectin4a LOC108267696 coding downstream 4371 20318437 ~ 20332200 (+)
coro1b LOC108267697,LOC108440123,LOC107679286,LOC107597893,LOC107710519,LOC107683505,LOC107558435 coding downstream 19612 20333678 ~ 20345681 (+)
si:ch211-119e14.1 NA coding downstream 35362 20349428 ~ 20351877 (+)
trnaa-cgc NA coding downstream 38348 20352414 ~ 20352485 (+)
dtx4a dtx1,LOC108267695,LOC108440124,LOC103026639,LOC107558401,LOC107731926,LOC107597891 coding downstream 38654 20352720 ~ 20372376 (+)
G67827 NA non-coding upstream 31455 20250058 ~ 20275675 (+)
G67642 snrpf,LOC107738052,LOC107558408,LOC106609479 non-coding upstream 341242 19962599 ~ 19965888 (+)
G67595 NA non-coding upstream 389961 19916600 ~ 19917169 (+)
G67594 NA non-coding upstream 392727 19911739 ~ 19914403 (+)
G67582 NA non-coding upstream 418405 19888178 ~ 19888725 (+)
G67958 LOC108267586 non-coding downstream 166534 20480600 ~ 20481755 (+)
G68054 NA non-coding downstream 321282 20635348 ~ 20635565 (+)
G68070 NA non-coding downstream 378197 20692263 ~ 20693111 (+)
G68192 NA non-coding downstream 550812 20864878 ~ 20895955 (+)
G68299 NA non-coding downstream 874465 21188531 ~ 21189134 (+)
fcer1g LOC100305060 other upstream 152353 20147795 ~ 20154777 (+)
dock11 dock11,LOC107683516 other upstream 239910 19990684 ~ 20067220 (+)
G66864 NA other upstream 1448478 18856456 ~ 18858652 (+)
G66492 LOC108267609,LOC108437090 other upstream 2098566 18197312 ~ 18208564 (+)
frem1a frem1 other upstream 2163499 18113433 ~ 18143631 (+)
G68232 LOC108267516 other downstream 706192 21020258 ~ 21033753 (+)
plag1 plag1,LOC107570635 other downstream 1000152 21314218 ~ 21323967 (+)
mettl4 mettl4 other downstream 1315010 21629076 ~ 21640157 (+)
LOC113540377 NA other downstream 1438350 21752416 ~ 21762301 (+)
LOC113540463 NA other downstream 2335744 22649810 ~ 22652447 (+)

Expression


Co-expression Network