epdr1 (LOC108267170,LOC107664036,LOC107558964,LOC108437243,LOC107713986)


Basic Information

Item Value
gene id epdr1
gene name LOC108267170,LOC107664036,LOC107558964,LOC108437243,LOC107713986
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 23387009 ~ 23391001 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936928.2
TCGGGTGTGAGCGCGTGCTGTCGGGCTCGGGCCGTTAGATCGCGCGAGCCTGCCCTGCATTTGCGCAGACGCTGTCCGACTCGCGCTGTAGTCGACAAAGACCAGTTGTTTTATTGCTCGATTTTGCGTTGCGTTTCCAAAATGCAGCCTGGGTTAGTGTATCtggtagcagtgtgtgtgtggacggtAGGGGCGAGCTCGCTCGTGCGCCCGGAGGAGCCGTGTGTCGCCCCGCTGCAGTGGGAGGGCCGGCGCGTGCAGTATGACCACAGCACCGGGAGAAACACGCGCGCCGCTGTGGCGTACGACGCACAGAACCAGCGCATAAGACTGTTAGAGCAGAAGACAGGACACACACCGTGCAAGAAGTTCTTTGAATACATCTACCTGTTTAAGAGTGGCGTGTTATTCCAGATTGAGCAAGTCACCAAGGCATGTGCTAAGCTTAATTTGACTGAGCCCTGGGACCCGTATGACATCCCAATGAACTCCACATATGAGGATCAGTATTTCATTGGTGGGCCTGGAGATATGATTGAGGTTCAAGAGTGGTCTGACCGAAAGCAAGCTCGCAAAGATGAGACCTGGGTGGGAGTTTACACCTTGAAGGACTGCTACCCGGTGCATGAGACCTACACCAAGAACAGCAGCGTGACCACCTCCACTCGCATCTTTGACCTGGAACTGGGCATCAGTGACCCTGAAGTGTTCACCCCACCCAGCACCTGCATGTCGGCTCTGCCTGAACGTATGGCCTCTGACTGCTGAACCTTTTCTTCAATCTTTTAGTCCATCACTTTTCTGCAATCTGCACAGATGGATGAAAGGcataacatacacacagtagGTTTTCTAGATGGATAGCTGCTTGTTGAGCTAATATGTCATTGAGATAGAATGAAGAATAGGCGTAACTACCAGGAAAGCACAACTGTACCTTTATGCACTAAGGACCTCATATTCAAGACTGAATAAGAGGGTATATGGCATTTCTAGTTCTTcaacttttatttaactttattaacaTGTACTAAATAAATTGTGCCTCAAATTTAAACAGGAATACATtctaaacaaaatgcaaaacatggAAAGTCAACCATGGTTGTTACCTGTTGCTAACCTAAGCTTATTTCTGCATTGTGCCCCCATATACCCACATATTTGaacttatgtttattttatgaagtGCAAACCTGCATCAAACCTGACACATGTAAGGTGAATGGTTCTCTTAAATCAAAATTTTTGGTTATTTGTTCAACTGATAGCCATTACTGATTTGCTTTGATTTGTGTATCTTATTTAATATGGCTGCTTTAATGGTCATTAATCCATGCTATAAATCCATGACACaagacaataataaaacaatattaccAAAGGAATTATA

Function

NR:

description
mammalian ependymin-related protein 1-like

GO:

id name namespace
GO:0007160 cell-matrix adhesion biological_process
GO:0005576 extracellular region cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936928.2 True 1393 mRNA 0.46 3 23387009 23391001

Neighbor

gene id symbol gene type direction distance location
ranbp9 ranbp9,LOC107556766,LOC107664064 coding upstream 10824 23353969 ~ 23376185 (+)
rnf182 rnf182 coding upstream 37382 23345058 ~ 23349627 (+)
ackr4a LOC108267630 coding upstream 110208 23273523 ~ 23276801 (+)
si:ch211-106h4.6 LOC108267631 coding upstream 156556 23215075 ~ 23230453 (+)
si:ch211-106h4.4 NA coding upstream 172818 23181870 ~ 23214191 (+)
stard3nl stard3nl,LOC107713985 coding downstream 1657 23392658 ~ 23401730 (+)
otulinb LOC108268091 coding downstream 203960 23594961 ~ 23608201 (+)
ankhb ankh,ankhb,LOC108437249,LOC107657429,LOC107713990 coding downstream 223439 23614440 ~ 23641469 (+)
mycb LOC108268289 coding downstream 257270 23648271 ~ 23650633 (+)
LOC113540051 NA coding downstream 622855 24013856 ~ 24016743 (+)
G69522 NA non-coding upstream 18332 23367661 ~ 23368677 (+)
G69514 NA non-coding upstream 55480 23331033 ~ 23331529 (+)
G69449 NA non-coding upstream 95011 23291410 ~ 23291998 (+)
G69443 NA non-coding upstream 102083 23284554 ~ 23284926 (+)
G69294 NA non-coding upstream 382907 23001998 ~ 23004102 (+)
G69570 NA non-coding downstream 56462 23447463 ~ 23457206 (+)
G69641 NA non-coding downstream 219952 23610953 ~ 23611157 (+)
LOC117597085 NA non-coding downstream 263921 23654922 ~ 23767863 (+)
G69722 NA non-coding downstream 367383 23758384 ~ 23774271 (+)
G69735 NA non-coding downstream 455644 23846645 ~ 23849514 (+)
G69509 LOC108267411 other upstream 66666 23318504 ~ 23320343 (+)
LOC113540463 NA other upstream 734562 22649810 ~ 22652447 (+)
LOC113540377 NA other upstream 1624708 21752416 ~ 21762301 (+)
mettl4 mettl4 other upstream 1746852 21629076 ~ 21640157 (+)
plag1 plag1,LOC107570635 other upstream 2063042 21314218 ~ 21323967 (+)
klhl18 klhl18,LOC107657445,LOC107701005,LOC107733883,LOC107730797 other downstream 637105 24028106 ~ 24106223 (+)
G69971 NA other downstream 717794 24108795 ~ 24109889 (+)
kif2c kif2c other downstream 1468025 24859026 ~ 24871263 (+)
tnr tnr other downstream 2316826 25707827 ~ 25881110 (+)
LOC113539772 kiaa0040 other downstream 2506016 25897017 ~ 25902006 (+)

Expression


Co-expression Network