si:dkey-94e7.2 (si:dkey-94e7.2,LOC108268141,LOC108440665,LOC107686084,LOC107586344)


Basic Information

Item Value
gene id si:dkey-94e7.2
gene name si:dkey-94e7.2,LOC108268141,LOC108440665,LOC107686084,LOC107586344
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 22641742 ~ 22646438 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936932.2
CCCTCCCTTGGAGATTAGCTGTAGATTAGCTGAACAGTAATCCCAACCAGCACATGGCACGTCACagtctgaaagtgtgtgtaagcACTTTCTGTCCATAGATGTGTTATTTTCTGTTGTGAGAGCACGATGGCCAACATCTATACACTAAGGGCATTTTTCTTTGGCCAGTGGTCTTCCATGGTAAGACTTGATGGCAAAACAGTTATTATTACAGGAGCCAACACTGGCATTGGCAAAGAAACCACAAGAGATTTAGCAAAAAGAGGGGCCAGGATCATCATGGCTTGCAGAGATATTGCCAAAGCTGAAGCAGCGCAGAGAGAGATTGTTGCAGAGTCAGGCAACCAAAACGTTATAATCAGGAAACTAGATTTGGCGGACACCAAATCAATCAGAGAATTTGCAGAAGTGATAAACAATGAGGAGAAGCAATTACATATTCTAATAAACAACGCTGGAGTCATGATGTGCCCCTATTCTAAGACAGCAGATGGCTTTGAGATGCAATTTGGAGTCAATCATTtggGCCACTTCCTTCTAACTTTCCTGCTGATTGATTTGCTGAAAAAGTCTGCCCCGTCAAGAATCATCATCGTGTCCTCCATGGCTCATAGCTGGGGCACAATTAAACTGGATGACATCAACAGTGAGAGGAGTTACCACAGCAGGAGGGCGTATGGACAGAGCAAGCTAGCGAATATCCTCTGCACGCGATCCCTGGCCAAAAGACTTAAAGACACAGGAGTGACAGTATATGCTGTCCACCCAGGCATCGTTCGCACTGAACTAAAGAGACACATGAACCTTGGGCTCCTTTGCATGTGGAAAATGGTCAGGCCTTTCACTAAGACAGCAGTGCAGGGGGCTCAGACTTTAATCTACTGTGCTGTAGAGCCAGCCCTCGACTCACACAGTGGTGGCTATTACAGCAATTGTAGACCATCAAGTTGCACAAGAGCTGCTAGAGATGATGAAATGGCACAGAAGCTGTGGGACCTCAGTTGCCAGATGCTTGGCATGAACTGGGaatgaatgcaaaaaatatttgacatacacacactgaccactttattaggaacacctgtacatctgcttaGGCATGCAgttgtccaatcagccaatcatggggcagcagcacaatgcataaaagaCATAAAGACCAAGCATcattttccaatctttaacaggccagtttcagtgagcctgtgcccactatagcctcagattcctgtactTTCTGGCTGACAGGGGTGGAACCAGATGTGGTCTTCTCCTGTTGTAGCCCAcctgcctcaaggttcagcatgttgtgcattctgagatgcttttctgctcaccacagttgagtggttatttgagttatcataggcttcctgtcatctcaaaccagtctggccattgtcctctgacctctcacctCAACAAGgcctttccactgacagaactgTCTCTCACCTGATGTTTTTCGTAGGTTGTtatatgtgaaaatcccagatcagcagtttttgaaatataGGCTACATTGTATAATTGTACTATCAATGTAGTATATAGTATCAGTATTGGTGAATCCTGATTTTCCTAATTTTTTCCTCAAGTATTTGAAGCTCAGCACGTTATATTTCTTtagagtgtttttttattattattattttttcttttatctgaggccacagttacatttttaataaaatatatctgGCTTGATTCACATTCATTTGTGAAGTCAATCCATCATTGTAATTgtgatgaaatgaatgaatgaatgaatgaatgacccCAATTAATATTTGCTACAGGGGTGGCATGACAGCTTTTTGATGGTTCATGGTTAGGGCAAAAAGACATAgcttttgccatttttttgggactattactgacattttttcctAGTTACCTCATTAAAAGGCACTGACACATTCCTGATTCCTGTGTGATGTTGGCATTGATACATGCATTGAGGAGAGAGGTCAGGATTGTAGCATGTAACTCGCACTTGCATTGTTTTGTGATGGAAATTCCTGTGGTAACTAccaaatattaaacttttatcaGATAAAACAGAACCATTTAGCCATGTGTTTGGCAATAATTGATAGGAGCTAAACATTCACAGAAGGGCACAAGAGaagactgtgtatgtgtgtaatgcggggatgattttaataaaaggtTTATGGTATATTGCTGCAGCactgttcctggaataggctctggataGACTttgaccctaaccaggataaatcgcttactgaagatgaatgattaaatgtaacaaaatctGAAGCTGTTTCTACaggaaagacaaagaaaaacactgcaGAAAATGATATTCTAATAGTGAGACAAACCAGTTACTGTATAAAATGTTCCAATTACAGTCTTTATGGCCATGTATTGTTTTTCAGACAATCTAGGTCCATTTATGaaagaacaattttttttattcccaaaAGATTTT
>XM_034303970.1
TTATTATTACAGGAGCCAACACTGGCATTGGCAAAGAAACCACAAGAGATTTAGCAAAAAGAGTGCTGTCTCACAGGGGCCAGGATCATCATGGCTTGCAGAGATATTGCCAAAGCTGAAGCAGCGCAGAGAGAGATTGTTGCAGAGTCAGGCAACCAAAACGTTATAATCAGGAAACTAGATTTGGCGGACACCAAATCAATCAGAGAATTTGCAGAAGTGATAAACAATGAGGAGAAGCAATTACATATTCTAATAAACAACGCTGGAGTCATGATGTGCCCCTATTCTAAGACAGCAGATGGCTTTGAGATGCAATTTGGAGTCAATCATTtggGCCACTTCCTTCTAACTTTCCTGCTGATTGATTTGCTGAAAAAGTCTGCCCCGTCAAGAATCATCATCGTGTCCTCCATGGCTCATAGCTGGGGCACAATTAAACTGGATGACATCAACAGTGAGAGGAGTTACCACAGCAGGAGGGCGTATGGACAGAGCAAGCTAGCGAATATCCTCTGCACGCGATCCCTGGCCAAAAGACTTAAAGACACAGGAGTGACAGTATATGCTGTCCACCCAGGCATCGTTCGCACTGAACTAAAGAGACACATGAACCTTGGGCTCCTTTGCATGTGGAAAATGGTCAGGCCTTTCACTAAGACAGCAGTGCAGGGGGCTCAGACTTTAATCTACTGTGCTGTAGAGCCAGCCCTCGACTCACACAGTGGTGGCTATTACAGCAATTGTAGACCATCAAGTTGCACAAGAGCTGCTAGAGATGATGAAATGGCACAGAAGCTGTGGGACCTCAGTTGCCAGATGCTTGGCATGAACTGGGaatgaatgcaaaaaatatttgacatacacacactgaccactttattaggaacacctgtacatctgcttaGGCATGCAgttgtccaatcagccaatcatggggcagcagcacaatgcataaaagaCATAAAGACCAAGCATcattttccaatctttaacaggccagtttcagtgagcctgtgcccactatagcctcagattcctgtactTTCTGGCTGACAGGGGTGGAACCAGATGTGGTCTTCTCCTGTTGTAGCCCAcctgcctcaaggttcagcatgttgtgcattctgagatgcttttctgctcaccacagttgagtggttatttgagttatcataggcttcctgtcatctcaaaccagtctggccattgtcctctgacctctcacctCAACAAGgcctttccactgacagaactgTCTCTCACCTGATGTTTTTCGTAGGTTGTtatatgtgaaaatcccagatcagcagtttttgaaatataGGCTACATTGTATAATTGTACTATCAATGTAGTATATAGTATCAGTATTGGTGAATCCTGATTTTCCTAATTTTTTCCTCAAGTATTTGAAGCTCAGCACGTTATATTTCTTtagagtgtttttttattattattattttttcttttatctgaggccacagttacatttttaataaaatatatctgGCTTGATTCACATTCATTTGTGAAGTCAATCCATCATTGTAATTgtgatgaaatgaatgaatgaatgaatgaatgacccCAATTAATATTTGCTACAGGGGTGGCATGACAGCTTTTTGATGGTTCATGGTTAGGGCAAAAAGACATAgcttttgccatttttttgggactattactgacattttttcctAGTTACCTCATTAAAAGGCACTGACACATTCCTGATTCCTGTGTGATGTTGGCATTGATACATGCATTGAGGAGAGAGGTCAGGATTGTAGCATGTAACTCGCACTTGCATTGTTTTGTGATGGAAATTCCTGTGGTAACTAccaaatattaaacttttatcaGATAAAACAGAACCATTTAGCCATGTGTTTGGCAATAATTGATAGGAGCTAAACATTCACAGAAGGGCACAAGAGaagactgtgtatgtgtgtaatgcggggatgattttaataaaaggtTTATGGTATATTGCTGCAGCactgttcctggaataggctctggataGACTttgaccctaaccaggataaatcgcttactgaagatgaatgattaaatgtaacaaaatctGAAGCTGTTTCTACaggaaagacaaagaaaaacactgcaGAAAATGATATTCTAATAGTGAGACAAACCAGTTACTGTATAAAATGTTCCAATTACAGTCTTTATGGCCATGTATTGTTTTTCAGACAATCTAGGTCCATTTATGaaagaacaattttttttattcccaaaAGATTTT

Function

NR:

description
PREDICTED: retinol dehydrogenase 12-like isoform X3

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936932.2 True 2464 mRNA 0.41 7 22641742 22646438
XM_034303970.1 False 2272 mRNA 0.41 6 22642212 22646438

Neighbor

gene id symbol gene type direction distance location
ankrd33bb LOC108268146 coding upstream 97155 22538818 ~ 22544587 (+)
march6 march6,LOC107686038,LOC107746911,LOC107732575,LOC107664076 coding upstream 115976 22504804 ~ 22525766 (+)
atpsckmt fam173b coding upstream 139881 22497558 ~ 22501861 (+)
LOC113539999 LOC108267232,LOC108440662 coding upstream 146632 22484285 ~ 22495110 (+)
kif9 kif9 coding upstream 259675 22367730 ~ 22382067 (+)
tcea1 tcea1 coding downstream 24051 22670489 ~ 22677200 (+)
atp6v1h atp6v1h,LOC107664082,LOC107686042 coding downstream 56541 22702979 ~ 22737767 (+)
oprk1 oprk1,LOC108268135,LOC107664042,LOC107732559,LOC108440658,LOC107586336,LOC107558938 coding downstream 103427 22749865 ~ 22757329 (+)
chmp5a chmp5,LOC108440659,LOC107732555,LOC107586329,LOC107664100,LOC107558945,LOC107686086,LOC107746917 coding downstream 119825 22766263 ~ 22769071 (+)
bag1 bag1,LOC107746903,LOC106569734 coding downstream 124535 22770973 ~ 22774754 (+)
G68999 NA non-coding upstream 114186 22527328 ~ 22527556 (+)
G68954 scrib non-coding upstream 244641 22392839 ~ 22397101 (+)
G68955 NA non-coding upstream 253997 22383094 ~ 22387745 (+)
G68947 NA non-coding upstream 396917 22244588 ~ 22244825 (+)
G68687 NA non-coding upstream 723966 21914806 ~ 21917776 (+)
LOC113540593 NA non-coding downstream 280372 22926810 ~ 22938741 (+)
G69294 NA non-coding downstream 355560 23001998 ~ 23004102 (+)
G69443 NA non-coding downstream 638116 23284554 ~ 23284926 (+)
G69449 NA non-coding downstream 644972 23291410 ~ 23291998 (+)
G69514 NA non-coding downstream 684595 23331033 ~ 23331529 (+)
LOC113540377 NA other upstream 879441 21752416 ~ 21762301 (+)
mettl4 mettl4 other upstream 1001585 21629076 ~ 21640157 (+)
plag1 plag1,LOC107570635 other upstream 1317775 21314218 ~ 21323967 (+)
G68232 LOC108267516 other upstream 1607989 21020258 ~ 21033753 (+)
fcer1g LOC100305060 other upstream 2486965 20147795 ~ 20154777 (+)
LOC113540463 NA other downstream 3372 22649810 ~ 22652447 (+)
G69509 LOC108267411 other downstream 672066 23318504 ~ 23320343 (+)
klhl18 klhl18,LOC107657445,LOC107701005,LOC107733883,LOC107730797 other downstream 1381668 24028106 ~ 24106223 (+)
G69971 NA other downstream 1462357 24108795 ~ 24109889 (+)
kif2c kif2c other downstream 2212588 24859026 ~ 24871263 (+)

Expression


Co-expression Network