LOC113540437 (fam159a)


Basic Information

Item Value
gene id LOC113540437
gene name fam159a
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28648324 ~ 28652425 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936934.2
AATATAAAGGTGTGAGTTGCAGATGCAGCGTTGTCTTCtgtacaccttctgaccaatcaggatgcgGAATGCAACAGCGCTGCGGTATAAAACTGTTTTCTTACACAACAGCCGAGATTAGTGCTTGGATATGAAGTGGTGTAGTGCACTCCATTTCCAGCAGGGAGTCGTTTGAAACACAGCCAGAAGAAGATGCTGAGGAAGAAAAGGATACTGACGAAGCCTTTTGATGAGGGTTAGGATcaggttacattttttttttttttttgaattgttgaaaagtgaaaagagaaagcgatggagtgagcgagagagtgagagagagggagagaactGTGCGCTGTTTGAATGAGATGTGAGAATGAGTGCAGTGTGCTCGAGTTACTACACCGCGGAGAAGGAGCTGGTGAGTGCGTTCACATGTCCGAAAGCCGGCGGGGACGAGCGCGCGCGGTTCTGCTGCGGCTTCAACGACATTAAATACTGCTGTGACGATCCCAACAGCTTCTTTCCCTACGAGTACGGATACATGTGGTGGCTCAGTATTGGTGCTCTGATAGGTCTGTCCGTAGCTGCGGTGGTGCTCTTGGCCTTCCtggtcactgtgtgtgttctctgcatCCTCTTCATCAACACTAAACCCAGTCGGCTGGACAGCGGCCTTCCTCTCAGCGAGCCGGGTCGTGAGCTGAGTCCTGCTCCCAGCCCTTCCACCGGACCTCAAGGTTTCCACAAACATTTCCCAAGTAGCAAACTGCACTGTGCCGAGCAGCGGGCCGAACCCGAGCGTGTGTTTCAGCCCTGCTTCAGGGTCACCGTGGCCAGAGTGAATGCTGAAGGGCCCTCGTAGGAGCCGAGTCCACTGGCAGGTGCTTTTATTCAGGCAGAGTCAGAAGCCAAGTCAAGCCCCAAGCTGAGCGGTTGAAGGTTAACGGTCCTGCTCAAGAGCTCATGAACACGAAATAGTGAACAcgaaaatgacagaaatggcGCCGCGGGATTGTAGTTGGTGGCGGAGTGGCCTGGAACCTCAGCTCAAGCACGGACTCGGAAATAGAAATTCATCTCAGCAGATTTTCTCATCATGAAACGCAGTGACAAGTCATTCATTTACAGCGAAATCTGAAAAGTGAGTAAGTGACGTGAAAAAGGAGACTTTATGAGATGCCAATATGGCCGGTGGAACAGTGTATGTTTTTTCACCACTTTTGAACATTATCTGTGTTTTTAGGCTCCAGATTCTTGCTCTTACTCCCAGATCGTGAACAAGTCAGAGATATTCTACTATATTCTGCGTTATTAACCACATCTGaccttttttttgcctgttttcaGCAAGATATTCAGGTATGGAATGAGAAATGCTATAGTACATGTTACAAGTGGCTACGCTTACGCTAGTACTCATGTTTGAATTGTGATTGGTTGgcacatatttcattttaataatatttagttAAGCATTAATGTAATATACGTTACAATatatttaactgtatttaaaCATATACCACTTTTTAGATTTGGTATAAAAAGCTAAAATCATAAAATCTAATCATAAAAAAGTCTATTTCTGAACTTAtcttatagcaaaataatcttatatcttatatttatagcaatttaaaaaaaaacttttccaacgattccacagccatccgtggccgggtgaccaagagagcaaaactggccgtgcgctctgggtgggaggggcatagtCTCTCGCCGCTGTCAATCACAGGGAAACTTGTGAGGAAAGAGTTTTAGTCAGCGCAGCACCCTGCAGCACCACCGgcgcattcacactggagagaaacGAAAGCGTTTTAACTGTCAGAATAATCTCAAAACGCACCAGCGTGTGCACGCGGCAGAGAAGCCAGACCACTTTTCAGGAGTTTCAAACGTGAGAGTAATCTCCAAACACTGTAGTATTGCTCAGATTCAGCTATTTAACGACGTTTAATAGACACAAGTGTATTAACACACGTGACAGCTTTCCACGCAGATCAATGAACCTATCAAATAAAGACACATAATTATCAATTATCAACTGTAACTTTGCAATTTATATAGTTATCGACTGAATTTCTCTTGAAGTGTTCACATCACATAGtatcaatttttcaatttttttttcaaatgattgcttaaaataattatttaattaaaaaaaaattgtaatcgtaatatttattgtaatcttCCTGGAACAAGCTGAGTCGATAAACATAATAAACCTAATAAACATCACCGTATTGTTGGATATTCAGTATATAAATTCGTCATAtcaatattgtttttttctgaatggaGCTAGCCGAGACATGAGTAAGTTCTCAGACGCATCGTAACAGAGACgaagtttgtcatttttctgctgtttctttgtggcatggatgtatTTGCGTTCCTGGTGAAATGACCTGCAGCTGCATTAAGCAGTTCATATGGTTGGATCATAATAATCATCACCATAAGAATATCAGAGTATACGaaatgcatgtgtctgtgtgttattgAAATCATTAGTCAAACTTGATGTCAAGTTTTAGCAC
>XR_004578096.1
AATATAAAGGTGTGAGTTGCAGATGCAGCGTTGTCTTCtgtacaccttctgaccaatcaggatgcgGAATGCAACAGCGCTGCGGTATAAAACTGTTTTCTTACACAACAGCCGAGATTAGTGCTTGGATATGAAGTGGTGTAGTGCACTCCATTTCCAGCAGGGAGTCGTTTGAAACACAGCCAGAAGAAGATGCTGAGGAAGAAAAGGATACTGACGAAGCCTTTTGATGAGGGTTAGGATcaggttacattttttttttttttttgaattgttgaaaagtgaaaagagaaagcgatggagtgagcgagagagtgagagagagggagagaactGTGCGCTGTTTGAATGAGATGTGAGAATGAGTGCAGTGTGCTCGAGTTACTACACCGCGGAGAAGGAGCTGGTGAGTGCGTTCACATGTCCGAAAGCCGGCGGGGACGAGCGCGCGCGGTTCTGCTGCGGCTTCAACGACATTAAATACTGCTGTGACGATCCCAACAGCTTCTTTCCCTACGAGTACGGATACATGTGGTGGCTCAGTATTGGTGCTCTGATAGGTCTGTCCGTAGCTGCGGTGGTGCTCTTGGCCTTCCtggtcactgtgtgtgttctctgcatCCTCTTCATCAACACTAAACCCAGTCGGCTGGACAGCGGCCTTCCTCTCAGCGAGCCGGGTCGTGAGCTGAGTCCTGCTCCCAGCCCTTCCACCGGACCTCAAGGTTTCCACAAACATTTCCCAAGTAGCAAACTGCACTGTGCCGAGCAGCGGGCCGAACCCGAGCGTGTGTTTCAGCCCTGCTTCAGGGTCACCGTGGCCAGAGTGAATGCTGAAGGGCCCTCGTAGGAGCCGAGTCCACTGGCAGGTGCTTTTATTCAGGCAGAGTCAGAAGCCAAGTCAAGCCCCAAGCTGAGCGGTTGAAGGTTAACGGTCCTGCTCAAGAGCTCATGAACACGAAATAGTGAACAcgaaaatgacagaaatggcGCCGCGGGATTGTAGTTGGTGGCGGAGTGGCCTGGAACCTCAGCTCAAGCACGGACTCGGAAATAGAAATTCATCTCAGCAGATTTTCTCATCATGAAACGCAGTGACAAGTCATTCATTTACAGCGAAATCTGAAAAGCTCCAGATTCTTGCTCTTACTCCCAGATCGTGAACAAGTCAGAGATATTCTACTATATTCTGCGTTATTAACCACATCTGaccttttttttgcctgttttcaGCAAGATATTCAGGTATGGAATGAGAAATGCTATAGTACATGTTACAAGTGGCTACGCTTACGCTAGTACTCATGTTTGAATTGTGATTGGTTGgcacatatttcattttaataatatttagttAAGCATTAATGTAATATACGTTACAATatatttaactgtatttaaaCATATACCACTTTTTAGATTTGGTATAAAAAGCTAAAATCATAAAATCTAATCATAAAAAAGTCTATTTCTGAACTTAtcttatagcaaaataatcttatatcttatatttatagcaatttaaaaaaaaacttttccaacgattccacagccatccgtggccgggtgaccaagagagcaaaactggccgtgcgctctgggtgggaggggcatagtCTCTCGCCGCTGTCAATCACAGGGAAACTTGTGAGGAAAGAGTTTTAGTCAGCGCAGCACCCTGCAGCACCACCGgcgcattcacactggagagaaacGAAAGCGTTTTAACTGTCAGAATAATCTCAAAACGCACCAGCGTGTGCACGCGGCAGAGAAGCCAGACCACTTTTCAGGAGTTTCAAACGTGAGAGTAATCTCCAAACACTGTAGTATTGCTCAGATTCAGCTATTTAACGACGTTTAATAGACACAAGTGTATTAACACACGTGACAGCTTTCCACGCAGATCAATGAACCTATCAAATAAAGACACATAATTATCAATTATCAACTGTAACTTTGCAATTTATATAGTTATCGACTGAATTTCTCTTGAAGTGTTCACATCACATAGtatcaatttttcaatttttttttcaaatgattgcttaaaataattatttaattaaaaaaaaattgtaatcgtaatatttattgtaatcttCCTGGAACAAGCTGAGTCGATAAACATAATAAACCTAATAAACATCACCGTATTGTTGGATATTCAGTATATAAATTCGTCATAtcaatattgtttttttctgaatggaGCTAGCCGAGACATGAGTAAGTTCTCAGACGCATCGTAACAGAGACgaagtttgtcatttttctgctgtttctttgtggcatggatgtatTTGCGTTCCTGGTGAAATGACCTGCAGCTGCATTAAGCAGTTCATATGGTTGGATCATAATAATCATCACCATAAGAATATCAGAGTATACGaaatgcatgtgtctgtgtgttattgAAATCATTAGTCAAACTTGATGTCAAGTTTTAGCAC

Function

NR:

description
PREDICTED: membrane protein FAM159A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936934.2 True 2558 mRNA 0.42 3 28648324 28652425
XR_004578096.1 False 2456 misc_RNA 0.43 4 28648324 28652425

Neighbor

gene id symbol gene type direction distance location
dcaf8 dcaf8 coding downstream 5929 28632754 ~ 28642395 (-)
LOC113540232 LOC108267757,LOC108430781,LOC107591375,LOC107668940 coding downstream 20181 28619816 ~ 28628143 (-)
LOC113540234 csrp1a,LOC100304834,LOC107697020,LOC107559179,LOC108425502,LOC107673143,LOC107707378 coding downstream 29212 28611191 ~ 28619112 (-)
lmbr1 lmbr1 coding downstream 43081 28574908 ~ 28605243 (-)
shha shh coding downstream 156477 28476431 ~ 28491847 (-)
scp2a scp2,scp2a coding upstream 16554 28668979 ~ 28680704 (-)
czib c7h1orf123,cunh1orf123,si:ch211-284b7.3,LOC103022465,LOC107681739,LOC107719286,LOC107671679,LOC107722617 coding upstream 30047 28682472 ~ 28685576 (-)
uck2b uck2b,uck2,LOC108267616,LOC108430692,LOC104935075,LOC103363741 coding upstream 34131 28686556 ~ 28690012 (-)
zte38 LOC108267617,LOC108430736 coding upstream 47244 28699669 ~ 28706523 (-)
prdx1 LOC108267618,LOC108430734,LOC105891340,LOC103023705,LOC107577377,LOC107560788 coding upstream 55604 28708029 ~ 28711708 (-)
G72726 NA non-coding downstream 176553 28397661 ~ 28471771 (-)
G72709 NA non-coding downstream 264864 28343134 ~ 28383460 (-)
G72720 NA non-coding downstream 269192 28365657 ~ 28379132 (-)
G72658 pfn2,pfn2l non-coding downstream 503458 28081544 ~ 28144866 (-)
G72665 NA non-coding downstream 507886 28138866 ~ 28140438 (-)
G72796 NA non-coding upstream 14898 28667323 ~ 28668643 (-)
LOC117597077 NA non-coding upstream 60609 28713034 ~ 28717955 (-)
G72824 otol1a,LOC108267659,LOC103045957,LOC108430690,LOC107701323,LOC107560771,LOC107593893,LOC107722646,LOC105899147 non-coding upstream 130498 28782923 ~ 28784140 (-)
G72893 NA non-coding upstream 179959 28832384 ~ 28833720 (-)
LOC117597038 NA non-coding upstream 239591 28892016 ~ 28896799 (-)
trnas-uga_2 NA other downstream 411519 28236724 ~ 28236805 (-)
trnas-uga_1 NA other downstream 412057 28236186 ~ 28236267 (-)
LOC117597043 NA other downstream 422721 28197991 ~ 28225603 (-)
prkag2b LOC108267467,LOC108430764,LOC108434244 other downstream 606539 28016064 ~ 28041785 (-)
pcyt1aa pcyt1a,LOC108267677,LOC108430756,LOC103040438,LOC107709348,LOC107671662,LOC107559373 other downstream 1092337 27547752 ~ 27555987 (-)
LOC117597168 NA other upstream 135189 28787614 ~ 28791829 (-)
LOC117597037 dnajb4,LOC107566472,LOC107681825,LOC107599850,LOC107690981,LOC107751861,LOC108430719 other upstream 221153 28873578 ~ 28884965 (-)
usp33 usp33,LOC106569751,LOC107708728,LOC107751869 other upstream 496213 29148638 ~ 29171921 (-)
LOC113540665 LOC108267691,LOC108437516,LOC107715522,LOC107681815,LOC105889505 other upstream 911796 29564221 ~ 29575727 (-)
zgc:110366 LOC108267892,LOC108437513 other upstream 1072163 29724588 ~ 29730857 (-)

Expression


Co-expression Network