pcolce2a (LOC108268019)


Basic Information

Item Value
gene id pcolce2a
gene name LOC108268019
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29359500 ~ 29371526 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936950.2
TACCCATAGAAATGCTAATGAGATAATTAGCATAACGAATGCATCCGGCTCAGAAGCTAATTATTGGTCGAATCCTAAACGGACATGTAGTGCGCTGAGAATGGGCCAGAAACCGTGGTGTGACAGAGGAGTATGAAGTGTGTGCAAGAAGGGAAATAGGGAGTGATTTGGGACGCGGCCAATGTCATGTTCACTCCGAGCTCGAGATGTGGACTGTAACGTGGAGTGTTTGGGTTCCGTTAGTTTTCGGCTCGGTGTTTGGTCAAAGACAGCAAAGGCCGATGTTTACGTGTGGTGGAAACATTACTGGAACGTCAGGCCTCATTGGGAGTCAGGGTTACCCCGGAGTTTACCCCCCTAACACCAAATGTGTGTGGAGAATCACGGTGCCTCAGGGCAAAGTGGTGTCCCTCACCTTCCGTTCCCTCGACCTAGAGAGCGACGGACTTTGCCGCTACGACTACGTGGATGTGTACGACGGATTCGTTAACAGCCAGCGGCTCGGGCGCTTCTGTGGCACGGCACGGCCCGGAGCGCTGATCTCCAATCACAACAGGATGCAAGTAGTGATGGTTTCGGACGCCAACACGGCCGGGAGCGGCTTCCTGGCCGGATACGCCGCTGTTCGGCCCAATGCGAGGGGGGAGCGGTATTGTGGCGGACTCTTGGACAAACCCTCGGGAACCTTCATGACCCCTAACTGGCCGGAGAGAGATTATCCTCCAGGTGTGACATGCTCATGGCATATTATAGCACCTAAGCACCAGATAATAGAACTGAAGTTCGAGAAGTTCGACGTGGAGAGGGATAACTACTGCCGCTACGATCACATGGTCGTTTACAACGGCGCGGAAATGAGCGAGGCGACCAGGATCGGGAAGTTCTGCGGCGACAGCCCTCCTGCGCCGATCTACTCTGACGGCAGTCACCTCTTCATCCAGTTCATCTCTGATCTGAGCCTCACCGCCGACGGCTTCATCTGCCATTACACCTTCAAGCCGAAGAACTCCACCATCACAGGCTCCCCCGTTCCCGTTACTGCAGCCGCTCCCACCACTGCAGGGCCCATAGCACTGGCGTACTCTGAAGCTCTCTGCAAGCAGAAGTGCAAGAGGAGCGGAACGATCGAAAATCATTACTGCTTAAGCAACttcgTGCTGACGGGAACACTCGTCTCGGCTGCCATGAGGGAACAGAGCGTGCTCGCCACCTTCTCCATCACCAACGTGTACAAGGAAGGGAACCTGTCCATCCAGCAGGCCGGAAAGAGCATGAGCACGAAAGTCACGATCCTGTGTAAGAAATGCCCTTTAGTCAGGAGAGGTCTGAACTACATCGTCATGGGTCACGTCGACGAGCAGGGACAAGGCATCGTTTCGCCGCAGAACTTCGTAATGCCCTTCAAGACTAAGAAGCAGAAGGACCTGGCTGTGTTGAATAATGTCCGCTGCTGATGGTAGGCGGTGGCCATGTTGGATCTGTAGACTCATCAGATCATCCTCTGGATCTGTACACACCAGATTGGGAGTCATTGCAAGAGCATATTTTTCAGACCATAAGTCTGCTTCGAGAGGTAATCAGTATGTATGTTGATTCGTTGTATAtatcacattaatatatatatagaatcattcatttcatttgtagAACCTCTCAAATGACACTTCTGAGCTCTAATAACTTTCCCACACTATCAAATTGCCATATTACAATTATACAATATTGTAATGTACTTATAACATAAATGTTGCTTTGACATATAAAATGTGTCTTGTAGTCTGGAAAATATGACACGCATGCTCAttaatttttgacatttttattcatagaATCATCAGTACAGCGGTACTGtaatttattcatgaacaacataacattaaaaatgtacatttagtcttttttttgaGCATTAGTACATTCATTCTGTGTATGAAGagaatcatttaaatgtttctgcgaattcatgtgaatttttatttgtacaagCCGGCAGTTGTATCTGAGGATCTCCGAAGGTTTTATGCCAATGACCAGAAGGAAACTGCTAAATGCTTAAATTGTATCCTGGCCcatttggataaaagcatctgactaaataaataaatgcaaatgttatGGACCAAA
>XM_034303445.1
TGCATACCCATAGAAATGCTAATGAGATAATTAGCATAACGAATGCATCCGGCTCAGAAGCTAATTATTGGTCGAATCCTAAACGGACATGTAGTGCGCTGAGAATGGGCCAGAAACCGTGGTGTGACAGAGGAGTATGAAGTGTGTGCAAGAAGGGAAATAGGGAGTGATTTGGGACGCGGCCAATGTCATGTTCACTCCGAGCTCGAGATGTGGACTGTAACGTGGAGTGTTTGGGTTCCGTTAGTTTTCGGCTCGGTGTTTGGTCAAAGACAGCAAAGGCCGATGTTTACGTGTGGTGGAAACATTACTGGAACGTCAGGCCTCATTGGGAGTCAGGGTTACCCCGGAGTTTACCCCCCTAACACCAAATGTGTGTGGAGAATCACGGTGCCTCAGGGCAAAGTGGTGTCCCTCACCTTCCGTTCCCTCGACCTAGAGAGCGACGGACTTTGCCGCTACGACTACGTGGATGTGTACGACGGATTCGTTAACAGCCAGCGGCTCGGGCGCTTCTGTGGCACGGCACGGCCCGGAGCGCTGATCTCCAATCACAACAGGATGCAAGTAGTGATGGTTTCGGACGCCAACACGGCCGGGAGCGGCTTCCTGGCCGGATACGCCGCTGTTCGGCCCAATGCGAGGGGGGAGCGGTATTGTGGCGGACTCTTGGACAAACCCTCGGGAACCTTCATGACCCCTAACTGGCCGGAGAGAGATTATCCTCCAGGTGTGACATGCTCATGGCATATTATAGCACCTAAGCACCAGATAATAGAACTGAAGTTCGAGAAGTTCGACGTGGAGAGGGATAACTACTGCCGCTACGATCACATGGTCGTTTACAACGGCGCGGAAATGAGCGAGGCGACCAGGATCGGGAAGTTCTGCGGCGACAGCCCTCCTGCGCCGATCTACTCTGACGGCAGTCACCTCTTCATCCAGTTCATCTCTGATCTGAGCCTCACCGCCGACGGCTTCATCTGCCATTACACCTTCAAGCCGAAGAACTCCACCATCACAGGCTCCCCCGTTCCCGTTACTGCAGCCGCTCCCACCACTGCAGGGCCCATAGCACTGGCGTACTCTGAAGCTCTCTGCAAGCAGAAGTGCAAGAGGAGCGGAACGATCGAAAATCATTACTGCTTAAGCAACttcgTACAACACAATACTGTGGAGGATGAGTTGATATCCCGGTGTCGTCTCGTCACAGTGCTGACGGGAACACTCGTCTCGGCTGCCATGAGGGAACAGAGCGTGCTCGCCACCTTCTCCATCACCAACGTGTACAAGGAAGGGAACCTGTCCATCCAGCAGGCCGGAAAGAGCATGAGCACGAAAGTCACGATCCTGTGTAAGAAATGCCCTTTAGTCAGGAGAGGTCTGAACTACATCGTCATGGGTCACGTCGACGAGCAGGGACAAGGCATCGTTTCGCCGCAGAACTTCGTAATGCCCTTCAAGACTAAGAAGCAGAAGGACCTGGCTGTGTTGAATAATGTCCGCTGCTGATGGTAGGCGGTGGCCATGTTGGATCTGTAGACTCATCAGATCATCCTCTGGATCTGTACACACCAGATTGGGAGTCATTGCAAGAGCATATTTTTCAGACCATAAGTCTGCTTCGAGAGGTAATCAGTATGTATGTTGATTCGTTGTATAtatcacattaatatatatatagaatcattcatttcatttgtagAACCTCTCAAATGACACTTCTGAGCTCTAATAACTTTCCCACACTATCAAATTGCCATATTACAATTATACAATATTGTAATGTACTTATAACATAAATGTTGCTTTGACATATAAAATGTGTCTTGTAGTCTGGAAAATATGACACGCATGCTCAttaatttttgacatttttattcatagaATCATCAGTACAGCGGTACTGtaatttattcatgaacaacataacattaaaaatgtacatttagtcttttttttgaGCATTAGTACATTCATTCTGTGTATGAAGagaatcatttaaatgtttctgcgaattcatgtgaatttttatttgtacaagCCGGCAGTTGTATCTGAGGATCTCCGAAGGTTTTATGCCAATGACCAGAAGGAAACTGCTAAATGCTTAAATTGTATCCTGGCCcatttggataaaagcatctgactaaataaataaatgcaaatgttatGGACCAAA

Function

NR:

description
PREDICTED: procollagen C-endopeptidase enhancer 2-like isoform X1

GO:

id name namespace
GO:0005576 extracellular region cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936950.2 False 2124 mRNA 0.48 9 29359500 29371522
XM_034303445.1 True 2182 mRNA 0.48 9 29359500 29371526

Neighbor

gene id symbol gene type direction distance location
chst2a LOC108268021 coding downstream 22797 29333119 ~ 29336703 (-)
dipk2aa dia1a,LOC108268022,LOC108437525,LOC107681802,LOC107599840,LOC107722302,LOC107565821 coding downstream 36583 29300306 ~ 29322917 (-)
zzz3 zzz3,LOC104950552 coding downstream 212008 29131186 ~ 29147492 (-)
pigk pigk,LOC107751867,LOC107599845 coding downstream 282064 29055012 ~ 29077436 (-)
LOC113540041 dnajb4,LOC108430719,LOC107599850,LOC107681825,LOC107751861 coding downstream 441348 28911613 ~ 28918152 (-)
mfsd8l2 LOC108267997,LOC108437504 coding upstream 70589 29442115 ~ 29452793 (-)
kcnmb2 NA coding upstream 89515 29461041 ~ 29466020 (-)
eif4a2 eif4a2,LOC108267852,LOC107568626,LOC107593804,LOC105889495 coding upstream 147565 29519091 ~ 29530681 (-)
LOC113540702 NA coding upstream 151868 29523394 ~ 29523466 (-)
LOC113540698 NA coding upstream 152197 29523723 ~ 29523912 (-)
G73327 NA non-coding downstream 39166 29273589 ~ 29320334 (-)
G73319 NA non-coding downstream 141342 29216270 ~ 29218158 (-)
G73318 LOC107599861 non-coding downstream 144449 29213553 ~ 29215051 (-)
G73247 NA non-coding downstream 163333 29128055 ~ 29196167 (-)
G73423 NA non-coding upstream 168569 29540095 ~ 29540356 (-)
G73439 NA non-coding upstream 236075 29607601 ~ 29607805 (-)
G73452 LOC108268059 non-coding upstream 299661 29671187 ~ 29674270 (-)
G73457 rc3h1,LOC108267889,LOC108437509 non-coding upstream 339560 29711086 ~ 29712194 (-)
G73458 LOC108267889 non-coding upstream 341367 29712893 ~ 29713446 (-)
usp33 usp33,LOC106569751,LOC107708728,LOC107751869 other downstream 187579 29148638 ~ 29171921 (-)
LOC117597037 dnajb4,LOC107566472,LOC107681825,LOC107599850,LOC107690981,LOC107751861,LOC108430719 other downstream 474535 28873578 ~ 28884965 (-)
LOC117597168 NA other downstream 567671 28787614 ~ 28791829 (-)
LOC113540437 fam159a other downstream 707075 28648324 ~ 28652425 (-)
trnas-uga_2 NA other downstream 1122695 28236724 ~ 28236805 (-)
LOC113540665 LOC108267691,LOC108437516,LOC107715522,LOC107681815,LOC105889505 other upstream 192695 29564221 ~ 29575727 (-)
zgc:110366 LOC108267892,LOC108437513 other upstream 353062 29724588 ~ 29730857 (-)
G73619 blvra other upstream 647980 30019506 ~ 30022525 (-)
LOC113540055 LOC108268301 other upstream 1370001 30741527 ~ 30750968 (-)
ccl20l LOC100304631 other upstream 1401923 30773449 ~ 30775819 (-)

Expression


Co-expression Network