psmb5 (psmb5,LOC107668975,LOC108438927,LOC107706341,LOC106569426)


Basic Information

Item Value
gene id psmb5
gene name psmb5,LOC107668975,LOC108438927,LOC107706341,LOC106569426
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 31528370 ~ 31533258 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936953.2
CCGGcggaagtagaagaagaagaaagggcgGAGAGCTGGTGATATTTGTAAAGATGGCGCTGGCTGATGTGCTGAAGAGTGAGTGTGCGGATTTTGAACAGTCTTTTCCATTCGGCTGTGGCTTTAACGATGCAGATCTCGGCGTCGGTGAAGCTTCAGGAGAGCGTCTCAATTTCGCACTGAGCCCTTTTGAAGGAGAAGAAGATGGAATTGAGAGAAAAATTGAGTTTCTTCACGGAACAACTACTTTAGCGTTTAAATTTCAGCACGGCGTCATCGTGGCAGTGGACTCCCGGGCGACAGCTGGGTCGTACATCGCCTCTCAGACAGTGAAGAAGGTCATCGAGATCAACCCGTATCTGCTGGGCACCATGGCAGGCGGAGCTGCTGACTGCAGTTTCTGGGAGCGTCTGCTGGCGAGGCAGTGCCGCATCTACGAGCTGCGCAACAAGGAGCGCATTTCAGTCGCGGCCGCCTCCAAACTGCTGGCTAACATGGTGTACCAGTACAAAGGCATGGGTCTGAGCATGGGCACCATGGTCTGCGGCTGGGACAAGAGGGGGCCAGggctCTACTACGTGGACTCGGAAGGGAACCGTGTGTGTGGCGATATGTTTGCTGTGGGTTCAGGTTCTATGTACGCCTACGGAGTCCTCGACAGCGGCCACCGCACCGACCTGACCATCGAGGAGGCCTGTGATCTTGGCCGCCGCGCCATCTACCAGGCCACCTTCCGTGACGCCTACAGCGGTGGCCAAGTCAACCTTTACCGCGTACACAGCGAGGGCTGGGAGAGGGTCTCTCATGATGACGTACTCAAGCTCCATCATCAGTACCAGAGTCAGAAGGCCTAGAGAGATGAACAGGGTGGGAATGACGGAAGGAAGTAAAACGTTCAGAGGGTTTCAGGGTGTAACAGAAGAGTACAGTTAAGAGAGCAATGGCATGACTAGGCACCCAAAGCCTGATTTAGTGCATTATGGTAATTTATTTCTACTAACACAGCAATTAAACTTGGAAAAATTGTGCAGGTGAATCAGATAGGGAACGAGTTTGGACCCTGGGAATGTAGAAGTTATGctactttttgaatttgtgctctctctgtgtcactgCACTGTAACCCAGTTACTACagtctcttttttgttttgttttttgcagtaTATAGTTATGTTATTTGTTTAGTCAGTAGCTTATTCACTTGCATCCTACTGGCCATATTGAGCATAATTACTTCTCACTACATACACAATGTTAAGAACACTCACAATAAACTGTGGAATTGTTTTTGCTA

Function

symbol description
psmb5 Predicted to enable endopeptidase activity. Predicted to be involved in proteasomal protein catabolic process. Predicted to act upstream of or within proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm. Predicted to be part of proteasome core complex, beta-subunit complex. Predicted to be active in nucleus. Is expressed in female organism. Orthologous to human PSMB5 (proteasome 20S subunit beta 5).

NR:

description
proteasome subunit beta type-5-like

GO:

id name namespace
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0005839 proteasome core complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004298 threonine-type endopeptidase activity molecular_function

KEGG:

id description
K02737 PSMB5; 20S proteasome subunit beta 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936953.2 True 1296 mRNA 0.50 3 31528370 31533258

Neighbor

gene id symbol gene type direction distance location
LOC113540461 LOC108267708,LOC107591395 coding downstream 25992 31379473 ~ 31502378 (-)
LOC113540063 LOC108267709 coding downstream 164099 31360647 ~ 31364271 (-)
LOC113540523 LOC108267123 coding downstream 171398 31353902 ~ 31356972 (-)
carmil3 carmil3,LOC108268291 coding downstream 183386 31290821 ~ 31344984 (-)
LOC113540512 NA coding downstream 803713 30721032 ~ 30724657 (-)
LOC113540064 NA coding upstream 5281 31538539 ~ 31544634 (-)
nmnat2 nmnat2,LOC107658365,LOC107563562 coding upstream 176806 31710064 ~ 31727552 (-)
LOC117597140 NA coding upstream 1290300 32823558 ~ 32825567 (-)
LOC117596924 NA coding upstream 1301781 32835039 ~ 32835722 (-)
LOC117596934 NA coding upstream 1310843 32844101 ~ 32845270 (-)
G74256 NA non-coding downstream 217461 31236413 ~ 31310909 (-)
G74255 NA non-coding downstream 301782 31225234 ~ 31226588 (-)
G74060 NA non-coding downstream 411934 31056485 ~ 31116436 (-)
G74047 NA non-coding downstream 496990 31030389 ~ 31031380 (-)
LOC113540224 NA non-coding downstream 690260 30836352 ~ 30838110 (-)
G74417 NA non-coding upstream 33793 31567051 ~ 31650584 (-)
G74458 NA non-coding upstream 203034 31736292 ~ 31785757 (-)
G74479 NA non-coding upstream 211093 31744351 ~ 31745462 (-)
G74457 NA non-coding upstream 219863 31753121 ~ 31756304 (-)
LOC113540068 NA non-coding upstream 333824 31867082 ~ 31870008 (-)
rem2 rem2,LOC108268350,LOC108442842,LOC107706340,LOC107567555,LOC107694663,LOC107583115,LOC107738122 other downstream 251121 31247060 ~ 31277249 (-)
ccl20l LOC100304631 other downstream 752551 30773449 ~ 30775819 (-)
LOC113540055 LOC108268301 other downstream 777402 30741527 ~ 30750968 (-)
G73619 blvra other downstream 1505845 30019506 ~ 30022525 (-)
zgc:110366 LOC108267892,LOC108437513 other downstream 1797513 29724588 ~ 29730857 (-)
LOC117597010 NA other upstream 337260 31870518 ~ 31871874 (-)
G74547 NA other upstream 341051 31874309 ~ 31874827 (-)
G74550 NA other upstream 346776 31880034 ~ 31880556 (-)
LOC117597011 NA other upstream 349685 31882943 ~ 31883607 (-)
LOC117597121 NA other upstream 372368 31905626 ~ 31910974 (-)

Expression


Co-expression Network