ncf2 (ncf2)


Basic Information

Item Value
gene id ncf2
gene name ncf2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 22329268 ~ 22338376 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936958.2
CAGAGTTCAGTTTCATGTGTTCATGAGATGATAAAAAGGGAAGAGTGGTTTTCACTAAGGTTTCAGCTGCAGCCGAGGGAACATGTCCTTCGTGAACACTCTGCGTCAGTGGGATGAAGCAGTGGCTTGTGTGGAGAAAAAGGACACAGTCTCTGCTCTCGGGATATTCCTGGACATTGAAGAAAAGACATCAAAGATCAACTTCAACATCGGATGCCTCCATCTACAAAACAATGAGCTGGATGCTGCTGAGAAGGCATTTGACAATAGCATCGGCAAAGATCAGCATCTGGCCGTTGCTTTTTTTCAGCGGGGAATTACATTCTACAAAAAAGAAAGGTTTGAAGAGTCACTGATGGATTTCCAGCAAGCTTTTAAGGAGCTTAGAGGGAATCACCTCATAGACTACAAACCTCTTGGACTGATGTATAAACTTTATGcttgtgagGTGCTGCACAATATTGGACTTGTCTATGCGCAAATGGGGAAATGGGAGAATGCTCAGGAAAAACTGCTTTTAGCTCTTAACATCCGTATAGAATCCAAATTCAGCCACATCGACAAGGCTCTGGAATCCATTCTGaagcaGAAACTATTTCCTCTGGTGGTGATTCGCCCAGAGCTTATGTTCAAACCCAATAAGCACTATGTGGCAGAGCTGGAGAAAAAGGACTACCTTGGAAAGGCCAAGGTTATATCTTCTGTGGTTCCTGCTGATAACTTCTCAGGTTTTGCTCCTCTTCAGCCTCAAGTTGAAGATGTGCCAGCTAAACCCAAGGCACCAGAAGTACTGAGAGCTCTTGAAGGTGAACCACACACTGTTCTGTACGAGTTCATTCCCGAGACCAAAGAAGAACTGGCTGTGTTACCAGGCAACATCGTCTTCGTTCttcagagagggactgacaacTGGGCGTCTGTTATTTTCAACGAAAGGAGAGGTTTGGTTCCCTACAATTTCCTGGAGCCATTGGACATTACAGTGGCCTCAAAAATGGTGCAGGTTGCACCATCCAGCAGCAATGAAGATATACCCGATCCACCAAGAAGAGCAGCACCCAGTAAACCTGTGAGTAAAGCAGGTCAGAAGGCTGCCACAACAGAGACTAAAGCTGATGATGATTTCTCAAAATGCATTGTGAAAGTGCACTTCCTGTTTACCATATCCATCTGCATTGCACCAGGACAGCCATTTAAAACCGTCCTCaatattatcagcaataaacTCAAGCGACCTGCTTCTACACTCACTCTGAGGTATTTTAAGCCTGGATCTACTGAGAAAGTAACAGTCGAAGAGTCAGAGATGGAGGTGCTGTGGACCTGCGTGAGCAACAATCGCCTCACACTGTGGTGTTCAGCCACCGAGGATAAAACTATAACTCAGAAAAAGATGGTGGCTCTGTATGCTTATGAGGCATCTACACCTGAAGACCTGGCCTTTGCTCAAGGTGATGTCATCACTGTCCTGTCTACAGTGAATGAAGAGTGGATTGAGGGCGAGTGCAATGGGAAGACTGGCATCTTTCCATCATCTTTTGTTGTAAATCATGAAGATAATCAGTAGATGGAGACAAGTTTgactgaaaaataacaaaatcttAACACGAAAGATTACTGGATTATTTAAAGCTTAAGTGTAATTTAACCAGCAATGCTGAAGTGCACCTATAGAAAGGGTCACTGTATGTCTGCACATACTTGCAGTCCTTTTCTTATAGACTTggataatacaatacaattattttatgaacatatttTAGCTTTTGGAAATTACTTGTGTACAAATTTTTTGCCATTAAGTTGCAAatgaatcactttttaaaatataccaAAGAACCTTTTATAATTGATCACCACCACTAAactgtaagcaataaaacatgatgcaTTATATGCTATTACCTCACCATATCTGTTATATAACTgcactttttaatccatttattattggtctcagattatgtggagcatccaaaATACAAGTCTCTGTTACTGAGCTGTTACTAGtaacattagaatgagcacattaatagaCTGTAAACCtattatttgaattacagctggctgtcagaggtgctgtcacaaaaaattaatcaacaatttctgagcaatcagaataGGGAatccaacagcactgtggtgtaatacATGTTCAACTGCTTTTGACAATGTGTACTTAAATAAAAACCAGCAACAGCAA

Function

symbol description
ncf2 Predicted to enable superoxide-generating NADPH oxidase activator activity. Predicted to be involved in superoxide anion generation. Predicted to act upstream of or within phagocytosis and respiratory burst. Predicted to be part of NADPH oxidase complex. Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in Alzheimer's disease; autosomal recessive chronic granulomatous disease cytochrome b-positive type II; and rheumatoid arthritis. Orthologous to human NCF2 (neutrophil cytosolic factor 2).

NR:

description
PREDICTED: neutrophil cytosol factor 2

GO: NA

KEGG:

id description
K08010 NCF2, P67PHOX; neutrophil cytosolic factor 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936958.2 True 2203 mRNA 0.41 14 22329268 22338376

Neighbor

gene id symbol gene type direction distance location
prkdc prkdc,LOC107598697,LOC103399435 coding upstream 11977 22272475 ~ 22317291 (+)
abcf2b abcf2b,LOC108268161,LOC108440639,LOC103022164,LOC107684499 coding upstream 60876 22259992 ~ 22268392 (+)
smarcd3b smarcd3,smarcd3b,LOC108268163,LOC108442951,LOC103047704,LOC106578675 coding upstream 89644 22190686 ~ 22239624 (+)
nfx1 nfx1,LOC108268165 coding upstream 144583 22170332 ~ 22184685 (+)
plxdc2 plxdc2,LOC107724400,LOC107659453,LOC107598695,LOC107684879 coding upstream 165687 22045016 ~ 22163581 (+)
LOC117597114 NA coding downstream 25306 22363682 ~ 22364458 (+)
kif9 kif9 coding downstream 29354 22367730 ~ 22382067 (+)
LOC113539999 LOC108267232,LOC108440662 coding downstream 145909 22484285 ~ 22495110 (+)
atpsckmt fam173b coding downstream 159182 22497558 ~ 22501861 (+)
march6 march6,LOC107686038,LOC107746911,LOC107732575,LOC107664076 coding downstream 166428 22504804 ~ 22525766 (+)
G68947 NA non-coding upstream 84443 22244588 ~ 22244825 (+)
G68687 NA non-coding upstream 411492 21914806 ~ 21917776 (+)
G68621 NA non-coding upstream 579949 21732946 ~ 21749319 (+)
G68523 NA non-coding upstream 841780 21486974 ~ 21487488 (+)
G68435 NA non-coding upstream 1012753 21316255 ~ 21316515 (+)
G68955 NA non-coding downstream 44718 22383094 ~ 22387745 (+)
G68954 scrib non-coding downstream 54463 22392839 ~ 22397101 (+)
G68999 NA non-coding downstream 188952 22527328 ~ 22527556 (+)
LOC113540593 NA non-coding downstream 588434 22926810 ~ 22938741 (+)
G69294 NA non-coding downstream 663622 23001998 ~ 23004102 (+)
LOC113540377 NA other upstream 566967 21752416 ~ 21762301 (+)
mettl4 mettl4 other upstream 689111 21629076 ~ 21640157 (+)
plag1 plag1,LOC107570635 other upstream 1005301 21314218 ~ 21323967 (+)
G68232 LOC108267516 other upstream 1295515 21020258 ~ 21033753 (+)
fcer1g LOC100305060 other upstream 2174491 20147795 ~ 20154777 (+)
LOC113540463 NA other downstream 311434 22649810 ~ 22652447 (+)
G69509 LOC108267411 other downstream 980128 23318504 ~ 23320343 (+)
klhl18 klhl18,LOC107657445,LOC107701005,LOC107733883,LOC107730797 other downstream 1689730 24028106 ~ 24106223 (+)
G69971 NA other downstream 1770419 24108795 ~ 24109889 (+)
kif2c kif2c other downstream 2520650 24859026 ~ 24871263 (+)

Expression


Co-expression Network