LOC113540455


Basic Information

Item Value
gene id LOC113540455
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 20069061 ~ 20075035 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936959.2
ACGCAGATTAGAGCTGCTTTCAGTTACAAGCACAGCACACTGGCTGAATATCGCAGTCTCATCAGGCTGCTTTAATCAGTGATCTCGAATTGTTTTGGAGCAGTTTATAACGGATTTAGCGTCTCTCTGAGTTCACATCCTCTCCtcggattttttttaaatatatatacaccacaCATGAAGAGCTTTTGAGGAAACTCTCCTCCTATCTGTGGATTTCCCTCAGTGATCCGGTATGAAGCTCCTAGGCTGGGATGGCTCTGTGGTGCTGATGTGCTTGTCCTTCACTCTGGTTGGAGTTGACAGCTTATCAGGCAGTTTGCCTCCTCCAGAAAATCTCAGCCTGTCATGGGACCCACGCAATTTGTCTGTGCATATACACTGGAGAGAACCAGCTGGCTTGGACACAAAATGTAAAGTGAACTATACTTTAGCAATATATTATGAGaAATGTCCTCCCAGACAAAATACTCCAAATATACATCGAACAAGCGATTTGAGCTTTAATCATCCCTTTTCTAAAGAGGATGAAATATGTGTTGGCCTAACAACAAACCCTATGGTCTGTGAAAACAAACCTGCCAGCAAAGAAGTATACAAAGGCCTATCTCCACCCCTAGCCTTAGTGAAGAATTTCAGTTGTGTTTATTATgctgaaaaaaagatgaactgCACATGGACTATAGTCAAAAATACCCCCGACCTTCAGCTCTTTTACAGGgaagtgaataaaaacaaagacagcCTAAAGCATTGTTTGTCATATCTCACCTATGGAACCATGAAGACAGGCTGTCACCTTCATGATGAAAACCTTACGACTTCTGCAAAGGTTTACTTTGTCATCAATGGAACTGGAGACAATCACCTGATTAACAACAGATTTATGATAGAAATACGTGTCGCAGtgaaaCCGCCTAAGCCCAAGGTCAGCATCACGCAGGAAGGCGAACGCCTCCATTTTCAAGCAAGCACTCCCAATTTTGTAGCACCACAATGTTTGAAGTACAAGTATATGTACAGCAAATGCAATGAAAAGAGTGAAGTGGtcgaaacagaaaaaaactcaaCACTTGTGGAATACGACACAGCCTGCAAGTACGCTGTTCGAGGACAGGTCATATACTCAAGCTACTGCGGGGGGGACGTAGACATTGAGAGTGACATGAGCGAACCTGTGTATTATGGTGAGGATGGTGACCCAAATTTGGCATTTAAAGTGGTTATGATCATCACCCCTTTAATAGTGTGCTGCTGTCTCATAGCAGCTATAGTGCTGTTTAGGAGAAACAAGGATATCATTCTCCCAAAGATTCCTGAACCATCCCTGTTTTTCAAGGATATGCTTAACAGTACTTCTGATGGACTTTCAAAGAGCCTGGGTGGAGGAAAACTCTATGTGCCTGTTAAAGAGGTTGTGGTTAGCGGCGTGAGCCTGGAACCAAAGTCTATTCTTTTACACCCAAACCATGATACCTGCATCTAAACTACATAATGCTGTGCTCTGAAAATGGCCAGTAGTGGACTAACAGTGACAAAGTCTGGCTCTGATATCTAGCAGCTTAATCTTAAATCTATGCGCAACACTGTTGCCTTTTAAGAGCTACTTAGTTCTGTGCATTCCTTCATTCTTCAGGCTAGGTAAAGGACTGTCTTGCATTCACAATTGTATTAGATAGATTGTGATGTACTCAGTGGCCATCTGAGTTCATGTATGAATGAGGAAATCATGGTGACATCTCTTCACAAGCTCAGCAAAGCCAGACCACAGGCCCTGGGATCTGCTGAGTCCCGAAAATATTCAGTAAAGAAAGAGAACGATGATGTGCTTGCAAACAGCATTACTCAGGAGTATAGCTATATTTCCCCACTTGGGTAATAATGCAAATGGAAACGGGTAACCTTGTAAATAAAAGGACACTTAACATAGACATTTAGCCATCTTTTATCATCTGTACCTCTTCTGTACATCAGTGGCAATTTCAATCTAATATTATATGGCTGTATAGTGTTCATAggaatatttgtaaatattgacatacaGAAAGGTTTTCTACATAGTTTGctctgtaaataaaaagaacatgGTTAACTATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936959.2 True 2097 mRNA 0.41 10 20069061 20075035

Neighbor

gene id symbol gene type direction distance location
ntn4 ntn4 coding upstream 85784 19971311 ~ 19983277 (+)
si:ch73-71d17.2 LOC108267752 coding upstream 115838 19943740 ~ 19953223 (+)
slx1b LOC108267068,LOC108436203,LOC107677699,LOC107583271,LOC105020774,LOC107721665 coding upstream 182360 19881928 ~ 19886701 (+)
LOC113539773 LOC108267568 coding upstream 196912 19867151 ~ 19872149 (+)
LOC113539894 bank1 coding upstream 374545 19651897 ~ 19694516 (+)
LOC113540456 LOC108268101 coding downstream 6735 20081770 ~ 20087305 (+)
LOC113539830 NA coding downstream 16852 20091887 ~ 20099077 (+)
trnar-ucu_2 NA coding downstream 25990 20101025 ~ 20101098 (+)
kirrel1a kirrel,kirrela,LOC108440115,LOC107731894,LOC107558429,LOC107679226 coding downstream 27446 20102481 ~ 20129464 (+)
hacd4 hacd4 coding downstream 84277 20159312 ~ 20166249 (+)
G67642 snrpf,LOC107738052,LOC107558408,LOC106609479 non-coding upstream 103173 19962599 ~ 19965888 (+)
G67595 NA non-coding upstream 151892 19916600 ~ 19917169 (+)
G67594 NA non-coding upstream 154658 19911739 ~ 19914403 (+)
G67582 NA non-coding upstream 180336 19888178 ~ 19888725 (+)
G67579 NA non-coding upstream 187322 19879978 ~ 19881739 (+)
G67827 NA non-coding downstream 175023 20250058 ~ 20275675 (+)
G67958 LOC108267586 non-coding downstream 405565 20480600 ~ 20481755 (+)
G68054 NA non-coding downstream 560313 20635348 ~ 20635565 (+)
G68070 NA non-coding downstream 617228 20692263 ~ 20693111 (+)
G68192 NA non-coding downstream 789843 20864878 ~ 20895955 (+)
dock11 dock11,LOC107683516 other upstream 1841 19990684 ~ 20067220 (+)
G66864 NA other upstream 1210409 18856456 ~ 18858652 (+)
G66492 LOC108267609,LOC108437090 other upstream 1860497 18197312 ~ 18208564 (+)
frem1a frem1 other upstream 1925430 18113433 ~ 18143631 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other upstream 2058099 18000158 ~ 18010962 (+)
fcer1g LOC100305060 other downstream 72760 20147795 ~ 20154777 (+)
G68232 LOC108267516 other downstream 945223 21020258 ~ 21033753 (+)
plag1 plag1,LOC107570635 other downstream 1239183 21314218 ~ 21323967 (+)
mettl4 mettl4 other downstream 1554041 21629076 ~ 21640157 (+)
LOC113540377 NA other downstream 1677381 21752416 ~ 21762301 (+)

Expression


Co-expression Network