LOC113540456 (LOC108268101)


Basic Information

Item Value
gene id LOC113540456
gene name LOC108268101
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 20081770 ~ 20087305 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936960.2
TCCTCCCATGCAGATGATTCACTTTGAGTAAGTCCTGCTAACGTGTCAGGCATTTTTTCCACTGTGGACTCGTCTGGTGATGATAGACAAGTTCGTTACTGAAAATAACCTTGGGAAAGTTTCGgatttttagtttgttttttttttacaagaattACAACATGTTTAAACACAAGTATGTTAGAGTATTGAGTAGAAACGCGATAATGTTTTGCGGATACTGGCATGTGGACTTCATACGCCTCCTGTGTTTCTCCGTCATGCTGGCTGGAGTTGCCTCAGAATCAGtaaaacCACCTAAGCCCAATGTCAACATCACACAGGAAGGTCGACTCCTCCGTTTTCAAGCAAGCACTCCAAATTATCTAGCACCACAATGTTGgaaatacagatatatatacagCAAATGCAATGAAGAGAGTGAAATGGTTGAAACAGGAGATAACCCAACATTACATGTGGAATACGACACAGCCTGCAAGTACGCTGTTCGAGGACAGGTCATATACTCAAGCTACTGCGGGGGGGACGTAGACATTGAGAGTGACATGAGCGAACCTGTGTATTATGGTGAGGATGGTGACCCAAATTTGGCATTTAAAGTGGTTATGATCATCACCCCTTTAATAGTGTGCTGCTGTCTCATAGCAGCTATAGTGCTGTTTAGGAGAAACAAGGATATCATTCTCCCAAAGATTCCTGAACCATCCCTGTTTTTCAAGGATATGCTTAACAGTACTTCTGATGGACTTTCAAAGAGCCTGGGTGGAGGAAAACTCTATGTGCCTGTTAAAGAGGTTGTGGTTAGCGGCGTGAGCCTGGAACCAAAGTCTATTCTTTTACACCCAAACCATGATACCTGCATCTAAACTACATAATGCTGTGCTCTGAAAATGG

Function

NR:

description
PREDICTED: uncharacterized protein LOC108268101 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936960.2 True 897 mRNA 0.42 6 20081770 20087305

Neighbor

gene id symbol gene type direction distance location
LOC113540455 NA coding upstream 6735 20069061 ~ 20075035 (+)
ntn4 ntn4 coding upstream 98493 19971311 ~ 19983277 (+)
si:ch73-71d17.2 LOC108267752 coding upstream 128547 19943740 ~ 19953223 (+)
slx1b LOC108267068,LOC108436203,LOC107677699,LOC107583271,LOC105020774,LOC107721665 coding upstream 195069 19881928 ~ 19886701 (+)
LOC113539773 LOC108267568 coding upstream 209621 19867151 ~ 19872149 (+)
LOC113539830 NA coding downstream 4582 20091887 ~ 20099077 (+)
trnar-ucu_2 NA coding downstream 13720 20101025 ~ 20101098 (+)
kirrel1a kirrel,kirrela,LOC108440115,LOC107731894,LOC107558429,LOC107679226 coding downstream 15176 20102481 ~ 20129464 (+)
hacd4 hacd4 coding downstream 72007 20159312 ~ 20166249 (+)
mllt3 mllt3,LOC107683508 coding downstream 134583 20221888 ~ 20271231 (+)
G67642 snrpf,LOC107738052,LOC107558408,LOC106609479 non-coding upstream 115882 19962599 ~ 19965888 (+)
G67595 NA non-coding upstream 164601 19916600 ~ 19917169 (+)
G67594 NA non-coding upstream 167367 19911739 ~ 19914403 (+)
G67582 NA non-coding upstream 193045 19888178 ~ 19888725 (+)
G67579 NA non-coding upstream 200031 19879978 ~ 19881739 (+)
G67827 NA non-coding downstream 162753 20250058 ~ 20275675 (+)
G67958 LOC108267586 non-coding downstream 393295 20480600 ~ 20481755 (+)
G68054 NA non-coding downstream 548043 20635348 ~ 20635565 (+)
G68070 NA non-coding downstream 604958 20692263 ~ 20693111 (+)
G68192 NA non-coding downstream 777573 20864878 ~ 20895955 (+)
dock11 dock11,LOC107683516 other upstream 14550 19990684 ~ 20067220 (+)
G66864 NA other upstream 1223118 18856456 ~ 18858652 (+)
G66492 LOC108267609,LOC108437090 other upstream 1873206 18197312 ~ 18208564 (+)
frem1a frem1 other upstream 1938139 18113433 ~ 18143631 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other upstream 2070808 18000158 ~ 18010962 (+)
fcer1g LOC100305060 other downstream 60490 20147795 ~ 20154777 (+)
G68232 LOC108267516 other downstream 932953 21020258 ~ 21033753 (+)
plag1 plag1,LOC107570635 other downstream 1226913 21314218 ~ 21323967 (+)
mettl4 mettl4 other downstream 1541771 21629076 ~ 21640157 (+)
LOC113540377 NA other downstream 1665111 21752416 ~ 21762301 (+)

Expression


Co-expression Network