slx1b (LOC108267068,LOC108436203,LOC107677699,LOC107583271,LOC105020774,LOC107721665)


Basic Information

Item Value
gene id slx1b
gene name LOC108267068,LOC108436203,LOC107677699,LOC107583271,LOC105020774,LOC107721665
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 19881928 ~ 19886701 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936965.2
GGGTGAGTTGCTGCATTTTTAGATTCTAAGCCcgtataattttaatataaaatttgtcAGGCGATATCTGAGCCGCACTAATAAACCGAAAATACCGCAAAGACGATTGTTTTCAAACTAAAAGCCAGGTTCAAATGATGTGATGACTCGGGCAGGCAGGGATTAGTAAAGTTAATATAGGGATCCtgaaatgatttcatttcatcGTTATTGTCGAGCTTTAGGGTAACTGTGCCTCGGTGTAGCTTGTCATGATGGTACGGTGTTGCTGTGGAAATCAGTGATATTTGCAGCCTGCTGGACTTCCAGCTTGAGAGGTTTGTGGAGGTTCGTGTATTACAATGGTTGTGGAGGTGGAGAGCTTCTATGGGGTGTACATGCTGTACTGCACCAACCCCAAATTTAAGGGGCGCATTTACATCGGCTTCACTGTGAACCCCGAGCGGAGAATCGGCCAACACAACGCCGGGAGACACAAAGGGGGAGCCAAGAAGACCAGCGGCAGAGGACCGTGGGAGATGGTGCTTATCATCCATGGCTTTCCATCTGATATTGCTGCTCTAAGGTTTGAGTGGGCGTGGCAGCACCCGCACACGTCTCGCCGGCTCTCTCACGTGACCCGGCGAACGCGTAAAGAGTCCAGCCTGCAGTTTCACTGGCGCGTGCTCTCCAACATGCTGCGGGTGGCACCGTGGAGTCGTCTACCCCTCACCGTGCGCTGGCTGAGGCAGGAATACCAGCTGGAGTTTGAGCCACAGCTGCAGCCGCCTCTGCACATCCCTCTGACCTTCGGCTGTGTTCGTGCTAAGAAGAAACAACAGCAGGAAGAGCAAGAGGAGAGCCGGCTGGACCGGTGTCTACTGTGTAGAGGGATTGTGCAGacttCAGATAGACTGTCTTGCTTCCATCCCTCCTGTAAGATGGTCTGTCATCTGATTTGCTTGGCAAAACATTTCTTGAAGTCAGACCCGGCTAACCTACTTCCTGTAGAGGGCGAGTGTCCCGGGTGCCATCACTCAGTGCTGTGGGGGAATTTGATTCGGCACAAAAATGGCTGCTATGGTGACCTAGAAGAGATTACTTCAAATTCTTCTCAGAGTCATTGGGCAGATGAGTTGCAGATATGAACAAAACTGATAGTGACATCAACTTCCAACATAGATGGACAAAATAAAAGGTTTTCTAAGCTGCCTAAAATTAAAGGACTTTTAATCATGACTTCAAGCTGGATGTATCACCTAATGTTCTCAGTCCATTTTGTATATGCAAAATGTCacgattagtttttttttttaattactggaggttcatttctttttaatgaatataaaaacgTGGATAATAGCTCTAGtgtttttaacacaaaataatgAATCTTGATGTGAACAACaagaatgtttttaaacatatgcatattttgtactgtgaaaatatttattaagcAATAAAGCAATGAATTTATATTCAGCA

Function

NR:

description
structure-specific endonuclease subunit slx1-like isoform X1

GO: NA

KEGG:

id description
K15078 SLX1; structure-specific endonuclease subunit SLX1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936965.2 True 1470 mRNA 0.45 6 19881928 19886701

Neighbor

gene id symbol gene type direction distance location
LOC113539773 LOC108267568 coding upstream 9779 19867151 ~ 19872149 (+)
LOC113539894 bank1 coding upstream 187412 19651897 ~ 19694516 (+)
LOC113540207 eif5a,LOC107691471,LOC106608670 coding upstream 396782 19481055 ~ 19485146 (+)
LOC113540575 slc2a4,LOC100136445,LOC100136540 coding upstream 410966 19455026 ~ 19470962 (+)
LOC113540663 cpz coding upstream 474301 19394155 ~ 19407627 (+)
si:ch73-71d17.2 LOC108267752 coding downstream 57039 19943740 ~ 19953223 (+)
ntn4 ntn4 coding downstream 84610 19971311 ~ 19983277 (+)
LOC113540455 NA coding downstream 182360 20069061 ~ 20075035 (+)
LOC113540456 LOC108268101 coding downstream 195069 20081770 ~ 20087305 (+)
LOC113539830 NA coding downstream 205186 20091887 ~ 20099077 (+)
G67579 NA non-coding upstream 189 19879978 ~ 19881739 (+)
trnah-gug_5 NA non-coding upstream 53038 19828819 ~ 19828890 (+)
trnah-gug_4 NA non-coding upstream 53546 19828311 ~ 19828382 (+)
LOC117597044 NA non-coding upstream 57669 19821178 ~ 19824259 (+)
G67287 NA non-coding upstream 59080 19811964 ~ 19822848 (+)
G67582 NA non-coding downstream 1477 19888178 ~ 19888725 (+)
G67594 NA non-coding downstream 25038 19911739 ~ 19914403 (+)
G67595 NA non-coding downstream 29899 19916600 ~ 19917169 (+)
G67642 snrpf,LOC107738052,LOC107558408,LOC106609479 non-coding downstream 75898 19962599 ~ 19965888 (+)
G67827 NA non-coding downstream 363357 20250058 ~ 20275675 (+)
G66864 NA other upstream 1023276 18856456 ~ 18858652 (+)
G66492 LOC108267609,LOC108437090 other upstream 1673364 18197312 ~ 18208564 (+)
frem1a frem1 other upstream 1738297 18113433 ~ 18143631 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other upstream 1870966 18000158 ~ 18010962 (+)
LOC113539940 NA other upstream 2261849 17609492 ~ 17620079 (+)
dock11 dock11,LOC107683516 other downstream 103983 19990684 ~ 20067220 (+)
fcer1g LOC100305060 other downstream 261094 20147795 ~ 20154777 (+)
G68232 LOC108267516 other downstream 1133557 21020258 ~ 21033753 (+)
plag1 plag1,LOC107570635 other downstream 1427517 21314218 ~ 21323967 (+)
mettl4 mettl4 other downstream 1742375 21629076 ~ 21640157 (+)

Expression


Co-expression Network